Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,404 +G coding (487/516 nt) b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,4021.G100.0% 683.2 / NA 195L162R (CTG→CGG) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (91/104);  total (91/104)

Only 100 of 196 total aligned reads displayed.

GTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT  >  NC_000913/4008345‑4008459
                                                                 |                                                             
gTCTGGAAGTGATGGCGGGCGGCGTTTGA‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  >  2:5460470/1‑94 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  >  2:4812738/1‑94 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  <  2:6030018/94‑1 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  >  2:3936957/1‑94 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  <  1:4516742/94‑1 (MQ=255)
 tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                 <  1:5051237/94‑2 (MQ=255)
 tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                 <  1:7816325/94‑2 (MQ=255)
  cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                >  2:5958420/1‑92 (MQ=255)
  cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                >  2:9026576/1‑92 (MQ=255)
  cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                >  2:7067033/1‑92 (MQ=255)
  cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                <  2:5695884/94‑3 (MQ=255)
  cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                <  2:3159666/94‑3 (MQ=255)
   tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               <  1:9467560/94‑4 (MQ=255)
   tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               >  1:8323723/1‑91 (MQ=255)
   tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               >  1:4852831/1‑91 (MQ=255)
    ggAAGTGATGGCGGTCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                              <  2:3969802/94‑5 (MQ=255)
    ggAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                              <  2:4317332/94‑5 (MQ=255)
    ggAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                              <  2:8511693/94‑5 (MQ=255)
          gATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  2:8893080/94‑1 (MQ=255)
          gATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  2:6576245/94‑1 (MQ=255)
          gATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        >  1:7931245/1‑94 (MQ=255)
          gATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  1:1219882/94‑1 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGag                      >  2:716483/1‑93 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  2:10109989/1‑94 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  1:7783819/1‑94 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  2:2192750/1‑94 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:9780329/94‑1 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  2:2004704/1‑94 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:10271386/94‑1 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:4573594/94‑1 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:3868845/94‑1 (MQ=255)
            tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  2:7973606/94‑1 (MQ=255)
             ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     <  1:683751/94‑1 (MQ=255)
             ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     <  2:6192011/94‑1 (MQ=255)
             ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     >  1:1980290/1‑94 (MQ=255)
             ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     >  2:7409542/1‑94 (MQ=255)
             ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     <  2:1352777/94‑1 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   <  2:4615906/94‑1 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   >  2:8736980/1‑94 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   >  1:3470749/1‑94 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   >  2:4511526/1‑94 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   <  2:1885333/94‑1 (MQ=255)
               cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   <  2:2803961/94‑1 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  >  2:4557714/1‑94 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  >  1:8969353/1‑94 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  1:6153311/94‑1 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  >  2:2277016/1‑94 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:6723938/94‑1 (MQ=255)
                gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  >  1:5008300/1‑94 (MQ=255)
                 ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 >  2:3712704/1‑94 (MQ=255)
                 ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 <  1:7387240/94‑1 (MQ=255)
                 ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 >  1:10299843/1‑94 (MQ=255)
                 ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 >  2:9822787/1‑94 (MQ=255)
                  gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                <  1:9298965/94‑1 (MQ=255)
                  gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                >  2:6573983/1‑94 (MQ=255)
                  gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                <  1:5201171/94‑1 (MQ=255)
                  gccgcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                <  1:4802832/91‑1 (MQ=255)
                   gggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  2:2430425/93‑1 (MQ=255)
                   cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGCAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               >  2:492205/1‑94 (MQ=255)
                   cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  2:9970306/94‑1 (MQ=255)
                   cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  1:1914560/94‑1 (MQ=255)
                   cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               >  1:4446341/1‑94 (MQ=255)
                   cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTCCGTTTGGTGACGGGATGAaagac               >  2:8629716/1‑94 (MQ=255)
                    ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  1:10216837/1‑94 (MQ=255)
                    ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  1:5381098/1‑94 (MQ=255)
                    ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              <  2:4709098/94‑1 (MQ=255)
                    ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacc              >  2:3689593/1‑93 (MQ=255)
                     gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc             <  2:4803442/94‑1 (MQ=255)
                     gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc             <  2:10174737/94‑1 (MQ=255)
                      cgTTT‑CAAAAGGCCATGCGTTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGca            <  1:2777085/94‑2 (MQ=255)
                      cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGGTGAACGACGcc            >  1:8688707/1‑94 (MQ=255)
                      cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc            <  2:4103989/94‑1 (MQ=255)
                      cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc            >  1:6085888/1‑94 (MQ=255)
                       gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  2:1079133/1‑94 (MQ=255)
                       gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  1:7662318/1‑94 (MQ=255)
                       gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  2:4874566/1‑94 (MQ=255)
                          ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa         <  2:3465770/90‑1 (MQ=255)
                          ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa         <  2:5625670/90‑1 (MQ=255)
                          ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa         <  2:4195817/90‑1 (MQ=255)
                           tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa        <  2:9085979/91‑1 (MQ=255)
                           tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa        >  1:4648492/4‑94 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  1:8198576/92‑1 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  2:5117278/92‑1 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       >  2:1724717/3‑94 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  1:2292684/92‑1 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  1:2514554/92‑1 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       >  2:8121667/3‑94 (MQ=255)
                            caaaaGGCCATGCGCTGGAAGCGGAGGCGAAGAAACTGGGCTACAGCCTGAAGGGTTGTATTGCGTTTGGTGACGGGATGAACGACGTCGaact       >  1:1501248/3‑92 (MQ=255)
                             aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:855279/2‑94 (MQ=255)
                             aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:5472649/2‑94 (MQ=255)
                             aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:3506593/2‑94 (MQ=255)
                              aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc     <  1:1012806/94‑1 (MQ=255)
                              aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc     >  2:7689670/1‑94 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  2:2778905/94‑1 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  1:10413929/94‑1 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   >  2:1637322/1‑94 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   >  2:295532/1‑94 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  2:4992613/94‑1 (MQ=255)
                                aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCCACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  2:2778903/94‑1 (MQ=255)
                                 ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt  >  1:3013830/1‑94 (MQ=255)
                                                                 |                                                             
GTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT  >  NC_000913/4008345‑4008459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑G‑GCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGC  >  NC_000913/4008370‑4008499
                                                 |                                                                                                
tcaAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA                                                    >  SRR4302545.4767244/4‑94 (MQ=16)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.2348517/92‑1 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   >  SRR4302545.2354825/3‑94 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.2575333/92‑1 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.8579375/92‑1 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.8387026/92‑1 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.8435863/92‑1 (MQ=18)
 caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT                                                   <  SRR4302545.8480524/92‑1 (MQ=18)
  AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG                                                  >  SRR4302545.5616317/1‑94 (MQ=19)
  AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG                                                  >  SRR4302545.312860/1‑94 (MQ=19)
  AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG                                                  >  SRR4302545.3592584/1‑94 (MQ=19)
  AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG                                                  >  SRR4302545.4910112/1‑94 (MQ=19)
  AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG                                                  >  SRR4302545.874445/1‑94 (MQ=19)
   AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC                                                 <  SRR4302545.1035173/94‑1 (MQ=21)
     AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG                                               <  SRR4302545.10720851/94‑1 (MQ=23)
     AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG                                               >  SRR4302545.287453/1‑94 (MQ=23)
     AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG                                               <  SRR4302545.5627053/94‑1 (MQ=23)
      tgccatgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT                                              >  SRR4302545.3143726/34‑94 (MQ=36)
      GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT                                              <  SRR4302545.6870088/94‑1 (MQ=25)
      GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT                                              >  SRR4302545.3087452/1‑94 (MQ=25)
       GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC                                             <  SRR4302545.7325608/94‑1 (MQ=26)
       GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC                                             <  SRR4302545.5377252/94‑1 (MQ=26)
        CCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG                                            <  SRR4302545.1999026/94‑1 (MQ=28)
        CCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG                                            <  SRR4302545.10756070/94‑1 (MQ=28)
        CCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG                                            >  SRR4302545.1430924/1‑94 (MQ=28)
        CCATGCGCTGGAAGCGGTGGCGAAGAAACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG                                            <  SRR4302545.5176382/94‑1 (MQ=28)
         catgcgctggaagcggtggcgaagaaacggG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGA                                           <  SRR4302545.9545021/64‑1 (MQ=42)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          >  SRR4302545.10257309/30‑94 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.4225974/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.1609605/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.3770210/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.10200980/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          >  SRR4302545.10257310/30‑94 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          >  SRR4302545.9191077/30‑94 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.2072725/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          <  SRR4302545.1925737/65‑1 (MQ=45)
          atgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT                                          >  SRR4302545.7973788/30‑94 (MQ=45)
           tgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG                                         <  SRR4302545.4651061/66‑1 (MQ=47)
           tgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG                                         <  SRR4302545.8547751/66‑1 (MQ=47)
           tgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG                                         <  SRR4302545.8547752/66‑1 (MQ=47)
           tgcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACAGGATGAACGACGCCGAAATGCTGTCGATG                                         <  SRR4302545.6922890/66‑1 (MQ=33)
           tgcgctggaagcggtggcgaagaaacggG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG                                         <  SRR4302545.3225758/66‑1 (MQ=47)
            gcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG                                        <  SRR4302545.8176748/67‑1 (MQ=49)
            gcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG                                        >  SRR4302545.250520/28‑94 (MQ=49)
            gcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG                                        >  SRR4302545.10067493/28‑94 (MQ=49)
            gcgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG                                        <  SRR4302545.173343/67‑1 (MQ=49)
             cgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGG                                       >  SRR4302545.9244872/27‑94 (MQ=48)
             cgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC                                       <  SRR4302545.9103505/68‑1 (MQ=51)
             cgctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC                                       <  SRR4302545.1747799/68‑1 (MQ=51)
              gctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGTTGTCGATGGC‑‑G                                    >  SRR4302545.2127916/26‑94 (MQ=39)
              gctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑G                                    >  SRR4302545.8562300/26‑94 (MQ=53)
              gctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑G                                    <  SRR4302545.10832781/69‑1 (MQ=53)
              gctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑G                                    <  SRR4302545.6111778/69‑1 (MQ=53)
              gctggaagcgggggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGGTGGC‑‑G                                    >  SRR4302545.8562301/26‑94 (MQ=39)
               ctggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GG                                   >  SRR4302545.8077099/25‑94 (MQ=55)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  <  SRR4302545.1372541/71‑1 (MQ=57)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  <  SRR4302545.5270725/71‑1 (MQ=57)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  <  SRR4302545.10079788/71‑1 (MQ=57)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  >  SRR4302545.9437685/24‑94 (MQ=57)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  >  SRR4302545.7317854/24‑94 (MQ=57)
                tggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG                                  >  SRR4302545.8654571/24‑94 (MQ=57)
                 ggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑G                               >  SRR4302545.5418160/23‑94 (MQ=56)
                 ggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑G                               <  SRR4302545.6428066/72‑1 (MQ=56)
                 ggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑G                               <  SRR4302545.4147849/72‑1 (MQ=56)
                  tgaagcggtgtcgaagaatctggtctacagcCTGAAGGATTGG‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑G                               <  SRR4302545.1588683/63‑1 (MQ=60)
                  gaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GA                              <  SRR4302545.4514185/73‑1 (MQ=56)
                  gaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GA                              >  SRR4302545.9454680/22‑94 (MQ=56)
                  gaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GA                              >  SRR4302545.1487729/22‑94 (MQ=56)
                   aagcggtggcgaagaacctgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             <  SRR4302545.2267980/74‑1 (MQ=55)
                   aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             <  SRR4302545.1008841/74‑1 (MQ=55)
                   aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             <  SRR4302545.5455299/74‑1 (MQ=55)
                   aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             <  SRR4302545.2524331/74‑1 (MQ=55)
                   aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             <  SRR4302545.1672674/74‑1 (MQ=55)
                   aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA                             >  SRR4302545.4116772/21‑94 (MQ=55)
                    agcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA                             <  SRR4302545.9144130/75‑1 (MQ=54)
                    agcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA                             >  SRR4302545.4913966/20‑94 (MQ=54)
                    agcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA                             <  SRR4302545.9144131/75‑1 (MQ=54)
                    agcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA                             <  SRR4302545.8738634/75‑1 (MQ=54)
                     gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAAG                            <  SRR4302545.4463206/76‑1 (MQ=53)
                     gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAAG                            <  SRR4302545.7721502/76‑1 (MQ=53)
                     gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAAG                            <  SRR4302545.4463207/76‑1 (MQ=53)
                     gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAAG                            <  SRR4302545.8626951/76‑1 (MQ=53)
                      cggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaagg                            >  SRR4302545.7545326/18‑88 (MQ=57)
                      cggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaagg                            <  SRR4302545.299968/77‑7 (MQ=57)
                      cggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaagg                            >  SRR4302545.1879854/18‑88 (MQ=57)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGCCACCGAAATGCTGTCGATGGC‑‑GGagaaatgc                           >  SRR4302545.4473925/17‑86 (MQ=29)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggc                           >  SRR4302545.3424649/17‑87 (MQ=57)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggc                           <  SRR4302545.2116743/78‑8 (MQ=57)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggc                           <  SRR4302545.5686161/78‑8 (MQ=57)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggc                           >  SRR4302545.6965074/17‑87 (MQ=57)
                       ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggc                           >  SRR4302545.2026337/17‑87 (MQ=57)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGtgaaaggct                          <  SRR4302545.10696059/79‑10 (MQ=55)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct                          <  SRR4302545.10508561/79‑9 (MQ=57)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct                          >  SRR4302545.5640384/16‑86 (MQ=57)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct                          <  SRR4302545.189557/79‑9 (MQ=57)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct                          <  SRR4302545.2598604/79‑9 (MQ=57)
                        gtggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct                          <  SRR4302545.2199793/79‑9 (MQ=57)
                         tggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctg                         <  SRR4302545.491815/80‑10 (MQ=57)
                         tggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctg                         <  SRR4302545.4970368/80‑10 (MQ=57)
                         tggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctg                         >  SRR4302545.5167863/15‑85 (MQ=57)
                         gggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctg                         <  SRR4302545.8742684/80‑10 (MQ=57)
                          ggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgc                        <  SRR4302545.286979/81‑11 (MQ=57)
                          ggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgc                        <  SRR4302545.4187247/81‑11 (MQ=57)
                          ggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgc                        <  SRR4302545.329098/81‑11 (MQ=57)
                          ggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgc                        >  SRR4302545.3340190/14‑84 (MQ=57)
                          ggcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgc                        >  SRR4302545.571596/14‑84 (MQ=57)
                           gcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCA                       <  SRR4302545.2737884/82‑1 (MQ=50)
                           gcgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCA                       >  SRR4302545.5240300/13‑94 (MQ=50)
                            cgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGT‑‑GGGGAAAGGCTGCAT                      <  SRR4302545.5034143/83‑1 (MQ=40)
                            cgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCAT                      <  SRR4302545.5053182/83‑1 (MQ=49)
                            cgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCAT                      >  SRR4302545.4203564/12‑94 (MQ=49)
                            cgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCAT                      <  SRR4302545.5813065/83‑1 (MQ=49)
                            cgaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCAT                      <  SRR4302545.778260/83‑1 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCTGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     <  SRR4302545.9350761/84‑1 (MQ=37)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.10842559/11‑94 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.3702744/11‑94 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.1482517/11‑94 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.4277279/11‑94 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     <  SRR4302545.10191557/84‑1 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.4757716/11‑94 (MQ=49)
                             gaagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATT                     >  SRR4302545.10371611/11‑94 (MQ=49)
                              aagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctggatta                    >  SRR4302545.1375441/10‑80 (MQ=57)
                              aagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTA                    >  SRR4302545.7639809/10‑94 (MQ=48)
                              aagaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTA                    >  SRR4302545.8001913/10‑94 (MQ=48)
                               agaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTAT                   <  SRR4302545.4729605/86‑1 (MQ=48)
                               agaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTAT                   >  SRR4302545.4264311/9‑94 (MQ=48)
                               agaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTAT                   <  SRR4302545.2413800/86‑1 (MQ=48)
                               agaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTAT                   >  SRR4302545.8437115/9‑94 (MQ=48)
                               agaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTAT                   <  SRR4302545.305200/86‑1 (MQ=48)
                                gaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATG                  >  SRR4302545.8468224/8‑94 (MQ=49)
                                gaaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATG                  >  SRR4302545.1730896/8‑94 (MQ=49)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 >  SRR4302545.7928784/7‑94 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 <  SRR4302545.7755049/88‑1 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 <  SRR4302545.10022409/88‑1 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 <  SRR4302545.8404804/88‑1 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 >  SRR4302545.8101187/7‑94 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 >  SRR4302545.3680290/7‑94 (MQ=51)
                                 aaactgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGG                 >  SRR4302545.3332614/7‑94 (MQ=51)
                                  AACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGG                <  SRR4302545.2835914/94‑1 (MQ=50)
                                  AACT‑GTGCTACAGCCTGAAGGATT‑GTAGTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGG                <  SRR4302545.1171544/94‑1 (MQ=40)
                                   ACTGG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGC               <  SRR4302545.6454083/94‑1 (MQ=53)
                                    ctgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCA              <  SRR4302545.3599983/91‑1 (MQ=57)
                                    ctgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCA              >  SRR4302545.7987309/4‑94 (MQ=57)
                                    ctgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGCGACGGGATGAACGAAGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctgcattattggcg              >  SRR4302545.4655664/4‑74 (MQ=31)
                                     tgG‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAG             >  SRR4302545.1231582/3‑94 (MQ=58)
                                     G‑G‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGT            >  SRR4302545.105536/1‑94 (MQ=60)
                                       G‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCCTTATGGGCAGTG           >  SRR4302545.8497386/1‑94 (MQ=50)
                                       G‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTG           >  SRR4302545.8497384/1‑94 (MQ=60)
                                       G‑GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTG           <  SRR4302545.1502884/94‑1 (MQ=60)
                                         GCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGC          >  SRR4302545.1400189/1‑94 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         <  SRR4302545.4869935/94‑3 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         >  SRR4302545.10718452/1‑92 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         >  SRR4302545.5711976/1‑92 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         <  SRR4302545.3351600/94‑3 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         >  SRR4302545.2681045/1‑92 (MQ=60)
                                          CTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcg         <  SRR4302545.6397730/94‑3 (MQ=60)
                                           TACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGCTGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAGAGGCTGCATTATGGGCAGTGGGC        >  SRR4302545.7445607/1‑94 (MQ=40)
                                            ACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgca       <  SRR4302545.1585454/94‑5 (MQ=60)
                                            ACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgca       >  SRR4302545.9250123/1‑90 (MQ=60)
                                            ACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgca       >  SRR4302545.10093443/1‑90 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGTGGC‑‑AAGGCTGCATTATGGGCAGTGcgtac      >  SRR4302545.9405280/1‑89 (MQ=51)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.3255126/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.1896862/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.6163185/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.1896861/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.8713038/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.8713037/1‑89 (MQ=60)
                                             CAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcac      >  SRR4302545.3956803/1‑89 (MQ=60)
                                              agcCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC     >  SRR4302545.4746905/4‑94 (MQ=60)
                                              agcCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC     >  SRR4302545.285765/4‑94 (MQ=60)
                                              agcCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC     <  SRR4302545.2715239/91‑1 (MQ=60)
                                              agcCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC     >  SRR4302545.4171883/4‑94 (MQ=60)
                                              AC‑CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCA    <  SRR4302545.2610471/94‑1 (MQ=60)
                                               gcCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCA    >  SRR4302545.768570/3‑94 (MQ=60)
                                               C‑CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG   >  SRR4302545.4917408/1‑94 (MQ=60)
                                               C‑CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG   <  SRR4302545.4977374/94‑1 (MQ=60)
                                                 CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGcgcaccagg  >  SRR4302545.8960570/1‑85 (MQ=60)
                                                 CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC  >  SRR4302545.3289969/1‑94 (MQ=60)
                                                 CTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC  <  SRR4302545.553713/94‑1 (MQ=60)
                                                 |                                                                                                
TTCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑G‑GCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGC  >  NC_000913/4008370‑4008499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑