Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,041,126 |
A→G |
E43G (GAG→GGG) |
dsbA → |
protein disulfide isomerase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,041,126 | 0 | A | G | 98.9%
| 2182.7
/ 1.5
| 642 | E43G (GAG→GGG) | dsbA | protein disulfide isomerase I |
| Reads supporting (aligned to +/- strand): ref base A (0/7); new base G (302/332); total (302/340) |
| Fisher's exact test for biased strand distribution p-value = 1.62e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 655 total aligned reads displayed.
TTAGCGTTTAGCGCATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGAGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCGT > NC_000913/4041035‑4041216
|
ttagcgtttagcgCATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGt < 1:6565676/94‑1 (MQ=255)
cgtttagcgCATAGGCGGCGCAGTATGGAGATGGTAAACAGTACACTACCCTGGGAAAACCGGAAGTTTGCGCGCCGCCAGGGCTGGGGttttt > 1:9096448/1‑94 (MQ=255)
ttagcgCATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTtctt > 2:2222337/1‑93 (MQ=255)
ttagcgCATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTtctc > 2:10016182/1‑94 (MQ=255)
gcgcATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCtcttt > 2:5020640/1‑94 (MQ=255)
gcATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCtctttct < 2:2017590/94‑1 (MQ=255)
gcATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCtctttct > 1:3250877/1‑94 (MQ=255)
cATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCtctttctt < 2:1257186/94‑1 (MQ=255)
aTCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGGTGGCGCGCCGCAAGTGCTGGGGCTTTTCTCTttcttc > 2:3717207/1‑94 (MQ=255)
aTCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTttcttc > 1:9210708/1‑94 (MQ=255)
tCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTtcttct < 1:8845648/94‑1 (MQ=255)
cggcggCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTg < 2:4155772/94‑1 (MQ=255)
cggcggCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTg < 2:5370495/94‑1 (MQ=255)
ggcggcGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGc < 1:2304760/94‑1 (MQ=255)
cggcgCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGccc < 1:9635928/94‑1 (MQ=255)
cggcgCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGccc < 1:399218/94‑1 (MQ=255)
ggcgCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCg > 1:1828375/1‑94 (MQ=255)
gcAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCAc > 2:548988/1‑94 (MQ=255)
ccAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCAc < 1:4893752/93‑1 (MQ=255)
aGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTg > 2:7619656/1‑94 (MQ=255)
aGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTg > 1:6218030/1‑94 (MQ=255)
aGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTg > 2:6389199/1‑94 (MQ=255)
gTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGc > 1:5099792/1‑94 (MQ=255)
tATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCt < 2:9455570/94‑1 (MQ=255)
tATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCt < 1:8214612/94‑1 (MQ=255)
aTGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTa > 1:10161131/1‑94 (MQ=255)
tGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGAGTTTTTCTCTTTCTTCTGCCCGCACTGCTAt < 2:7379604/94‑1 (MQ=255)
gAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATc > 1:7199274/1‑94 (MQ=255)
aaGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCa > 1:6901074/1‑94 (MQ=255)
aGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAg < 1:5541410/94‑1 (MQ=255)
aaTGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCGGGGTTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGt < 1:4634301/93‑1 (MQ=255)
aTGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGtt < 2:6319959/94‑1 (MQ=255)
gaaaCAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTgaa < 2:6988030/93‑1 (MQ=255)
aaaCAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTgaag > 2:613248/1‑94 (MQ=255)
aaCAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTgaaga < 1:849213/94‑1 (MQ=255)
aaCAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTgaaga < 2:8673068/94‑1 (MQ=255)
aaCAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTgaaga > 1:7310180/1‑94 (MQ=255)
aGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGt < 2:4293163/94‑1 (MQ=255)
aGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGt > 2:3284673/1‑94 (MQ=255)
tACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTc > 1:5002377/1‑94 (MQ=255)
acacTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCt < 2:9127745/94‑1 (MQ=255)
cacTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTg < 2:965687/94‑1 (MQ=255)
cacTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTg < 1:10444574/94‑1 (MQ=255)
cacTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTg > 2:8865138/1‑94 (MQ=255)
aCCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTCTCAGTTTGCAGAAGTTCTGCata > 1:8082264/1‑94 (MQ=255)
cccTGGAAAAACCGGTAGCTGGCTCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCatat < 1:7553732/94‑1 (MQ=255)
cccTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCatat < 2:1424607/94‑1 (MQ=255)
cccTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCatat < 2:2462066/94‑1 (MQ=255)
cTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATAttt < 2:5912951/94‑1 (MQ=255)
ggAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCt > 1:8387155/1‑94 (MQ=255)
gAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTg < 2:1822162/94‑1 (MQ=255)
gAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTg < 1:6066634/94‑1 (MQ=255)
gAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTg < 2:5765248/94‑1 (MQ=255)
aaaCCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATa > 2:3861295/1‑94 (MQ=255)
aaaCCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATa < 1:4328305/94‑1 (MQ=255)
aCCGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAAt < 2:7922755/94‑1 (MQ=255)
ccGGTCACTGGCGCGCAGCTAGTGCTGGGGTTTTTCTCTTTCTTCTGACCGCACTGCTATCAGTTTGAAGAAGTTCAGCATTTTTCTGATAAtg < 1:9402227/94‑1 (MQ=255)
cGGTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAAtgt > 2:8551631/1‑94 (MQ=255)
ggTAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAAtgtg < 2:7137258/94‑1 (MQ=255)
tAGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaa < 1:4789159/94‑1 (MQ=255)
aGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaag > 1:10314548/1‑94 (MQ=255)
aGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaag < 2:9226345/94‑1 (MQ=255)
aGCTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaag > 1:2105837/1‑94 (MQ=255)
cTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaagaa < 1:3715505/94‑1 (MQ=255)
cTGGCGCGCCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTgaagaa < 2:4924009/94‑1 (MQ=255)
gcgcgcCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGaaaaa < 1:5333450/94‑1 (MQ=255)
cgcgcCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGaaaaaa < 2:4709717/94‑1 (MQ=255)
gcgcCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAAc > 2:8251163/1‑94 (MQ=255)
gcgcCGCAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAAc < 1:5942530/94‑1 (MQ=255)
cgccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACt > 1:2506004/1‑94 (MQ=255)
cgccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACt < 2:307790/94‑1 (MQ=255)
gccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTg > 1:5395842/1‑94 (MQ=255)
gccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTg > 1:3493349/1‑94 (MQ=255)
ccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGc < 1:9836513/94‑1 (MQ=255)
ccgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACGGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGGAGAAAAAACTGc < 1:1734812/94‑1 (MQ=255)
cgcAAGTTCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGcc < 2:10510833/94‑1 (MQ=255)
cgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGcg > 2:3351752/1‑93 (MQ=255)
cgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGcc > 2:9847850/1‑94 (MQ=255)
cgcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGcc > 1:4167916/1‑94 (MQ=255)
gcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCg < 2:6628110/94‑1 (MQ=255)
gcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCg > 2:7976728/1‑94 (MQ=255)
gcAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCg > 1:6431777/1‑94 (MQ=255)
cAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCgg < 1:3045804/94‑1 (MQ=255)
cAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCgg < 1:1620866/94‑1 (MQ=255)
cAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCgg > 1:7815619/1‑94 (MQ=255)
cAAGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCgg < 1:3874756/94‑1 (MQ=255)
aaGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGa > 2:452834/1‑94 (MQ=255)
aaGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGa > 1:2776896/1‑94 (MQ=255)
aGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGaa > 1:2697735/1‑94 (MQ=255)
aGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGaa > 2:6820716/1‑94 (MQ=255)
aGTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGaa < 1:10546312/94‑1 (MQ=255)
gTGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAg < 1:1005943/94‑1 (MQ=255)
tGCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAgg < 2:2847187/94‑1 (MQ=255)
gCTGGTGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGc < 2:8753059/94‑1 (MQ=255)
gCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGc > 1:7741845/1‑94 (MQ=255)
gCTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGc < 1:1453240/94‑1 (MQ=255)
cTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCg > 2:7460679/1‑94 (MQ=255)
cTGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCg < 1:1209051/94‑1 (MQ=255)
tGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTTTCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCGt < 2:10217623/94‑1 (MQ=255)
tGGGGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCGt > 1:8609045/1‑94 (MQ=255)
|
TTAGCGTTTAGCGCATCGGCGGCGCAGTATGAAGATGGTAAACAGTACACTACCCTGGAAAAACCGGTAGCTGGCGCGCCGCAAGTGCTGGAGTTTTTCTCTTTCTTCTGCCCGCACTGCTATCAGTTTGAAGAAGTTCTGCATATTTCTGATAATGTGAAGAAAAAACTGCCGGAAGGCGT > NC_000913/4041035‑4041216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGC‑TTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCT > NC_000913/4041562‑4041717
|
CAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAAT < SRR4302545.2253155/94‑1 (MQ=60)
CAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAAT < SRR4302545.870259/94‑1 (MQ=60)
ATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATAT < SRR4302545.10939550/94‑1 (MQ=60)
ATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATAT < SRR4302545.6407443/94‑1 (MQ=60)
TATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATT < SRR4302545.10601991/94‑1 (MQ=60)
TATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATT < SRR4302545.10849014/94‑1 (MQ=60)
TATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATT < SRR4302545.7923141/94‑1 (MQ=60)
ATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTC < SRR4302545.7157618/94‑1 (MQ=60)
TGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCA < SRR4302545.1533676/94‑1 (MQ=60)
TGGATGTTTTTGTTAAGCAGCAAGCTGATACAGTGAAATATCTGTCTAAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCA < SRR4302545.9070622/94‑1 (MQ=60)
GGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAC < SRR4302545.5518289/94‑1 (MQ=60)
GGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAC < SRR4302545.9727456/94‑1 (MQ=60)
GGATGTTTTTGTTCAGCAGGATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAC < SRR4302545.10237613/94‑1 (MQ=60)
GATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACG < SRR4302545.10154058/94‑1 (MQ=60)
ATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGG < SRR4302545.8412118/94‑1 (MQ=60)
TGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG < SRR4302545.6807456/94‑1 (MQ=60)
GTTTTTGTTGAGCAGTATTCTGATTCAGTTAAATCGCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTTAATATTCACGGGC < SRR4302545.3455019/94‑1 (MQ=60)
GTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC < SRR4302545.9027602/94‑1 (MQ=60)
GTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC < SRR4302545.7515293/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.926533/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.1142021/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.5420022/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.4860765/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.2952472/94‑1 (MQ=60)
TTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑T < SRR4302545.9423174/94‑1 (MQ=60)
TTTTAGATCAACAGTGTGCTGATACAGTGAAATATCTGTCAGAAAAAGAAAAATTCAATGTAAATTACATAAAGCACGTGAATATTCACGAGC‑T < SRR4302545.9653784/94‑1 (MQ=42)
TTTTGTTCAGCATTGTGTTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCCCGGGC‑TT < SRR4302545.7965996/94‑1 (MQ=60)
TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TT < SRR4302545.155804/94‑1 (MQ=60)
TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TT < SRR4302545.1452068/94‑1 (MQ=60)
TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TT < SRR4302545.8973715/94‑1 (MQ=60)
TTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTT < SRR4302545.8877230/94‑1 (MQ=60)
TTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTT < SRR4302545.7173411/94‑1 (MQ=60)
TTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTT < SRR4302545.7338569/94‑1 (MQ=60)
TGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTT < SRR4302545.10656456/94‑1 (MQ=60)
TTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTT < SRR4302545.2480110/94‑1 (MQ=60)
GTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTT < SRR4302545.132036/94‑1 (MQ=60)
GTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTT < SRR4302545.3505300/94‑1 (MQ=60)
TTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTT < SRR4302545.490825/94‑1 (MQ=60)
TTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTT < SRR4302545.4874680/94‑1 (MQ=60)
TTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTT < SRR4302545.1318420/94‑1 (MQ=60)
TCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTta < SRR4302545.4773796/94‑3 (MQ=60)
CAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTtat < SRR4302545.5167667/94‑4 (MQ=60)
CAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTTTtat < SRR4302545.6242919/94‑4 (MQ=60)
AGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑TTTTT‑‑TTATT < SRR4302545.6415249/94‑1 (MQ=60)
GCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTA < SRR4302545.3965613/94‑1 (MQ=60)
GCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTA < SRR4302545.4926285/94‑1 (MQ=60)
CAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTAT < SRR4302545.3076604/94‑1 (MQ=60)
AGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATT < SRR4302545.7674792/94‑1 (MQ=60)
AGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATT < SRR4302545.10356139/94‑1 (MQ=60)
GTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTT < SRR4302545.4447859/94‑1 (MQ=60)
GTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTT < SRR4302545.9785766/94‑1 (MQ=60)
TATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTA < SRR4302545.8645829/94‑1 (MQ=60)
TATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTA < SRR4302545.7676280/94‑1 (MQ=60)
TGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAAT < SRR4302545.2156480/94‑1 (MQ=60)
GCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATA < SRR4302545.3581678/94‑1 (MQ=60)
CTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAA < SRR4302545.6489831/94‑1 (MQ=60)
CTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAA < SRR4302545.10803610/94‑1 (MQ=60)
GAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATAC > SRR4302545.7380862/1‑94 (MQ=60)
AGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCA < SRR4302545.9039177/94‑1 (MQ=60)
ATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCT > SRR4302545.2500086/1‑94 (MQ=60)
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CAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGC‑TTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCT > NC_000913/4041562‑4041717
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
