Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,477,321 Δ1 bp coding (12/1182 nt) yjgN → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,477,3210A.100.0% 1877.0 / NA 408coding (12/1182 nt)yjgNhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (269/139);  total (269/139)

Only 100 of 412 total aligned reads displayed.

GAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATAGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACGC  >  NC_000913/4477231‑4477409
                                                                                          |                                                                                        
gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTcc                                                                                     >  1:9215921/1‑94 (MQ=255)
gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTcc                                                                                     >  1:2640291/1‑94 (MQ=255)
gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAAGGGATGTTcc                                                                                     <  1:662870/94‑1 (MQ=255)
gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAACGGATGTTcc                                                                                     >  1:9006065/1‑94 (MQ=255)
 aaCATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCg                                                                                    >  1:7185694/1‑94 (MQ=255)
    aTTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTcc                                                                                 >  1:457177/1‑94 (MQ=255)
     ttttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                                                                <  2:8471192/94‑1 (MQ=255)
     ttttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                                                                <  2:7877422/94‑1 (MQ=255)
     ttttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                                                                >  1:7299131/1‑94 (MQ=255)
      tttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCa                                                                               >  1:2077648/1‑94 (MQ=255)
         aCTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTc                                                                            >  2:6938655/1‑94 (MQ=255)
          ctgtctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCg                                                                           <  2:3700087/94‑1 (MQ=255)
          ctgtctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCg                                                                           >  1:8082846/1‑94 (MQ=255)
            gtctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtt                                                                         >  1:10168601/1‑94 (MQ=255)
            gtctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtt                                                                         >  2:4488341/1‑94 (MQ=255)
            gtctgtATATATAAGTTATAACAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtt                                                                         >  2:10567389/1‑94 (MQ=255)
              ctgtATATATAAGTTATATCAAAGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttg                                                                       <  2:6619270/94‑1 (MQ=255)
                gtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttgtt                                                                     >  2:10245827/1‑94 (MQ=255)
                gtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttgtt                                                                     >  2:1095108/1‑94 (MQ=255)
                  atatataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGtttt                                                                   <  2:8012678/94‑1 (MQ=255)
                  atatataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGtttt                                                                   >  1:8576052/1‑94 (MQ=255)
                  atatataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGtttt                                                                   >  1:3541139/1‑94 (MQ=255)
                   tatataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGttttt                                                                  <  2:2659824/94‑1 (MQ=255)
                    atataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTc                                                                 <  2:2360178/94‑1 (MQ=255)
                    atataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTc                                                                 >  2:3044257/1‑94 (MQ=255)
                    atataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTc                                                                 >  2:5627258/1‑94 (MQ=255)
                     tataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCa                                                                >  2:9415312/1‑94 (MQ=255)
                     tataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCa                                                                <  2:7003569/94‑1 (MQ=255)
                      ataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCAt                                                               <  2:6099765/94‑1 (MQ=255)
                             atatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAg                                                        <  1:5691788/94‑1 (MQ=255)
                              tatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAgg                                                       >  2:7573934/1‑94 (MQ=255)
                                  aaTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgag                                                   >  2:5155007/1‑94 (MQ=255)
                                   aTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgaga                                                  >  2:1817938/1‑94 (MQ=255)
                                   aTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgaga                                                  >  1:4835712/1‑94 (MQ=255)
                                    tGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagag                                                 <  1:1890092/94‑1 (MQ=255)
                                    tGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagag                                                 <  2:1668599/94‑1 (MQ=255)
                                     ggATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagaga                                                >  2:151527/1‑94 (MQ=255)
                                     ggATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagaga                                                >  2:1489315/1‑94 (MQ=255)
                                      gATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGat                                               >  1:9741096/1‑94 (MQ=255)
                                        ttttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGatat                                             >  2:6204454/1‑94 (MQ=255)
                                        ttttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGatat                                             >  1:5530258/1‑94 (MQ=255)
                                         tttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtt                                            >  1:1612255/1‑94 (MQ=255)
                                              taattCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCt                                        <  2:3506394/91‑1 (MQ=255)
                                              taattCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCt                                        >  1:4373010/4‑94 (MQ=255)
                                               aattCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCtt                                       >  1:6104372/3‑94 (MQ=255)
                                               aattCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCtt                                       >  2:5851077/3‑94 (MQ=255)
                                                attCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCttt                                      >  2:2814240/2‑93 (MQ=255)
                                                attCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTa                                      <  1:9451138/93‑1 (MQ=255)
                                                attCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTa                                      <  1:287943/93‑1 (MQ=255)
                                                 ttCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTAt                                     <  1:8287986/94‑1 (MQ=255)
                                                 ttCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTAt                                     >  2:9779775/1‑94 (MQ=255)
                                                   cAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTAttt                                   >  2:7764933/1‑94 (MQ=255)
                                                   cAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTAttt                                   <  2:9201174/94‑1 (MQ=255)
                                                   cAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTAttt                                   >  1:7764507/1‑94 (MQ=255)
                                                     gggAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgt                                 >  1:1181589/1‑94 (MQ=255)
                                                     gggAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgt                                 >  1:7885475/1‑94 (MQ=255)
                                                      ggAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgtg                                >  2:7403643/1‑94 (MQ=255)
                                                       gAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgtgt                               >  2:4573238/1‑94 (MQ=255)
                                                        aaTTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgtgtg                              >  2:6791172/1‑94 (MQ=255)
                                                        aaTTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTtgtgtg                              >  2:2160736/1‑94 (MQ=255)
                                                         aTTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTgtgg                             >  1:6358246/1‑94 (MQ=255)
                                                          tttttATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTgtggt                            <  1:1392853/94‑1 (MQ=255)
                                                           ttttATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTgtggtg                           <  2:8059649/94‑1 (MQ=255)
                                                           ttttATGGCGCAAGTGATTAATGAAAGTGATGTTCAGTCCCATTATTTTGTTATTCATGGTACAGGTGAGAGATATTTTCTTATTTGTgtggtg                           <  1:4704767/94‑1 (MQ=255)
                                                             ttATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGaa                         >  1:10341298/1‑94 (MQ=255)
                                                              tATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAt                        <  1:3896577/94‑1 (MQ=255)
                                                               aTGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAtg                       <  1:2320203/94‑1 (MQ=255)
                                                                tGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAtgt                      <  1:9577474/94‑1 (MQ=255)
                                                                tGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAtgt                      <  1:4119263/94‑1 (MQ=255)
                                                                tGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAtgt                      >  2:8531095/1‑94 (MQ=255)
                                                                 ggCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAAtgtg                     <  2:8973180/94‑1 (MQ=255)
                                                                  gCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATgtgt                    <  2:9272741/94‑1 (MQ=255)
                                                                  gCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATgtgt                    >  2:7974259/1‑94 (MQ=255)
                                                                  gCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATgtgt                    >  1:5922851/1‑94 (MQ=255)
                                                                   cTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGGGAGATATTTTCTTATTTGTGTGGTGAATGtgtt                   >  1:9181489/1‑94 (MQ=255)
                                                                   cTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgtt                   >  2:4922827/1‑94 (MQ=255)
                                                                    tCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgttg                  <  2:8177913/94‑1 (MQ=255)
                                                                     cAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgttgt                 >  2:7631308/1‑94 (MQ=255)
                                                                     cAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgttgt                 <  1:5293622/94‑1 (MQ=255)
                                                                     cAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgttgt                 <  2:1443694/94‑1 (MQ=255)
                                                                     cAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGtgttgt                 <  1:8195260/94‑1 (MQ=255)
                                                                      aaGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTgttgtt                >  2:1295700/1‑94 (MQ=255)
                                                                      aaGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTgttgtt                <  2:9867028/94‑1 (MQ=255)
                                                                       aGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATTGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTa               <  1:5004816/94‑1 (MQ=255)
                                                                       aGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTa               <  1:10463528/94‑1 (MQ=255)
                                                                       aGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTa               >  1:10223593/1‑94 (MQ=255)
                                                                         ttattaATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAAc             >  2:4071480/1‑94 (MQ=255)
                                                                         ttattaATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAAc             <  2:3139445/94‑1 (MQ=255)
                                                                         ttattaATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAAc             <  1:7067650/94‑1 (MQ=255)
                                                                            ttaATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGAt          >  1:9951455/1‑94 (MQ=255)
                                                                            ttaATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGAt          >  1:8641159/1‑94 (MQ=255)
                                                                             taATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGAtt         >  1:10067884/1‑94 (MQ=255)
                                                                                 gAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATaa     <  2:1977896/94‑1 (MQ=255)
                                                                                  aaaTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAAc    <  2:1167293/94‑1 (MQ=255)
                                                                                  aaaTGGATGTTCCGTCCCATTCGTGTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAAc    <  1:5807364/94‑1 (MQ=255)
                                                                                   aaTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACg   <  2:8753610/94‑1 (MQ=255)
                                                                                   aaTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACg   >  1:6916930/1‑94 (MQ=255)
                                                                                   aaTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACg   >  2:9633478/1‑94 (MQ=255)
                                                                                   aaTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGAGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACg   >  1:3125384/1‑94 (MQ=255)
                                                                                    aTGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACGc  >  1:8875932/1‑94 (MQ=255)
                                                                                          |                                                                                        
GAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATAGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCTTATTTGTGTGGTGAATGTGTTGTTAACGATTATAACGC  >  NC_000913/4477231‑4477409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 269 total aligned reads displayed.
AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCT  >  NC_000913/4478410‑4478598
                                                                                             |                                                                                               
AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAG                                                                                                 <  SRR4302545.9713698/94‑1 (MQ=60)
 ATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGG                                                                                                <  SRR4302545.8509442/94‑1 (MQ=60)
  TCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC                                                                                              <  SRR4302545.5234712/94‑1 (MQ=60)
  TCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC                                                                                              <  SRR4302545.7734493/94‑1 (MQ=60)
  TCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC                                                                                              <  SRR4302545.10440395/94‑1 (MQ=60)
   CAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGTAGTGATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC                                                                                             <  SRR4302545.8281321/94‑1 (MQ=60)
   CAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC                                                                                             <  SRR4302545.5735354/94‑1 (MQ=60)
   CAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC                                                                                             <  SRR4302545.3212051/94‑1 (MQ=60)
   CAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC                                                                                             >  SRR4302545.5230461/1‑94 (MQ=60)
    AATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCG                                                                                            <  SRR4302545.3068577/94‑1 (MQ=60)
     ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATACAAAAGGCCGG                                                                                           >  SRR4302545.5815001/1‑94 (MQ=60)
     ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGG                                                                                           >  SRR4302545.5815002/1‑94 (MQ=60)
     ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGG                                                                                           <  SRR4302545.7105876/94‑1 (MQ=60)
     ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGG                                                                                           <  SRR4302545.4737072/94‑1 (MQ=60)
     ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGG                                                                                           >  SRR4302545.2746616/1‑94 (MQ=60)
       AAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG                                                                                         <  SRR4302545.410798/94‑1 (MQ=60)
       AAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG                                                                                         >  SRR4302545.8169267/1‑94 (MQ=60)
       AAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAAAAAAAAGGCCGGAG                                                                                         >  SRR4302545.10314960/1‑94 (MQ=60)
         AGAAGAACAACCAGATAAAGGGTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA                                                                                      <  SRR4302545.7253876/94‑1 (MQ=60)
         AGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA                                                                                      <  SRR4302545.7253873/94‑1 (MQ=60)
         AGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA                                                                                      <  SRR4302545.670031/94‑1 (MQ=60)
         AGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA                                                                                      >  SRR4302545.10043764/1‑94 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.6777957/94‑1 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.6461912/94‑1 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.7088571/94‑1 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.8451253/94‑1 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.9488598/94‑1 (MQ=60)
          GAAGAACAACCAGATAAAGGCTTATTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.7789790/94‑1 (MQ=60)
          AAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.6461913/94‑1 (MQ=60)
          AAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.3735643/94‑1 (MQ=60)
          AAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT                                                                                     <  SRR4302545.2192741/94‑1 (MQ=60)
            AGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC                                                                                   >  SRR4302545.462162/1‑94 (MQ=60)
            AGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC                                                                                   >  SRR4302545.8108113/1‑94 (MQ=60)
            AGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC                                                                                   >  SRR4302545.8108114/1‑94 (MQ=60)
             GAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCT                                                                                  <  SRR4302545.5875354/94‑1 (MQ=60)
             GAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCT                                                                                  <  SRR4302545.5452607/94‑1 (MQ=60)
             GAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCT                                                                                  <  SRR4302545.10022814/94‑1 (MQ=60)
              AACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGGATGCTC                                                                                 >  SRR4302545.9507809/1‑94 (MQ=60)
               ACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCC                                                                                <  SRR4302545.9547694/94‑1 (MQ=60)
                cgacaAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTGCCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG                                                                               <  SRR4302545.10288686/89‑1 (MQ=60)
                CAACGAGATAAAGGCTTCTGAGCCAGTATTTCACGGGGAGTTATGCCTTCTTGACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG                                                                               <  SRR4302545.7703622/94‑1 (MQ=60)
                CAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG                                                                               <  SRR4302545.1060306/94‑1 (MQ=60)
                CAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG                                                                               >  SRR4302545.634451/1‑94 (MQ=60)
                 AACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG                                                                              <  SRR4302545.9257632/94‑1 (MQ=60)
                 AACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG                                                                              >  SRR4302545.8774294/1‑94 (MQ=60)
                 AACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG                                                                              >  SRR4302545.560454/1‑94 (MQ=60)
                 AACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG                                                                              <  SRR4302545.6406547/94‑1 (MQ=60)
                 AACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG                                                                              >  SRR4302545.7635336/1‑94 (MQ=60)
                  ACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGC                                                                             >  SRR4302545.3911542/1‑94 (MQ=60)
                  ACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGGGCATGCTCCGGC                                                                             >  SRR4302545.7858249/1‑94 (MQ=60)
                   CCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCC                                                                            >  SRR4302545.10618964/1‑94 (MQ=60)
                   CCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCC                                                                            >  SRR4302545.3427804/1‑94 (MQ=60)
                    CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCT                                                                           <  SRR4302545.2604066/94‑1 (MQ=60)
                    CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCT                                                                           <  SRR4302545.4596412/94‑1 (MQ=60)
                    CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCT                                                                           >  SRR4302545.5237848/1‑94 (MQ=60)
                    CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCT                                                                           >  SRR4302545.1683552/1‑94 (MQ=60)
                    CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCT                                                                           <  SRR4302545.9098168/94‑1 (MQ=60)
                     AGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTT                                                                          <  SRR4302545.3674519/94‑1 (MQ=60)
                     AGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTT                                                                          <  SRR4302545.359271/94‑1 (MQ=60)
                       ATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTcg                                                                        >  SRR4302545.2805165/1‑92 (MQ=60)
                        TAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGT                                                                      >  SRR4302545.2818855/1‑94 (MQ=60)
                         AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTT                                                                     <  SRR4302545.4770997/94‑1 (MQ=60)
                         AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTT                                                                     >  SRR4302545.8800345/1‑94 (MQ=60)
                         AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTT                                                                     <  SRR4302545.9239539/94‑1 (MQ=60)
                         AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTT                                                                     >  SRR4302545.7067536/1‑94 (MQ=60)
                         AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTT                                                                     >  SRR4302545.9393001/1‑94 (MQ=60)
                          AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTT                                                                    >  SRR4302545.8370452/1‑94 (MQ=60)
                          AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTT                                                                    >  SRR4302545.2794788/1‑94 (MQ=60)
                          AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTT                                                                    <  SRR4302545.3836036/94‑1 (MQ=60)
                            GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTC                                                                  <  SRR4302545.7441021/94‑1 (MQ=60)
                            GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTC                                                                  <  SRR4302545.7981346/94‑1 (MQ=60)
                            GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTC                                                                  <  SRR4302545.2456981/94‑1 (MQ=60)
                             GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGACGGAGCATGCTCCGGCCTTCGTTTTCA                                                                 >  SRR4302545.4319547/1‑94 (MQ=60)
                              CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCAT                                                                >  SRR4302545.3595892/1‑94 (MQ=60)
                              CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCAT                                                                <  SRR4302545.25418/94‑1 (MQ=60)
                                 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCAC                                                             >  SRR4302545.9343466/1‑94 (MQ=60)
                                 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCAC                                                             >  SRR4302545.10449810/1‑94 (MQ=60)
                                   TAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTTCCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTG                                                           <  SRR4302545.2843874/94‑1 (MQ=60)
                                   TAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTG                                                           >  SRR4302545.1658125/1‑94 (MQ=60)
                                      CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGT                                                        <  SRR4302545.1415562/94‑1 (MQ=60)
                                      CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGT                                                        >  SRR4302545.6712344/1‑94 (MQ=60)
                                      CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGT                                                        >  SRR4302545.5093614/1‑94 (MQ=60)
                                       CAGTATTTCACGGGGAGTTATGTCTGCTTAACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTT                                                       <  SRR4302545.2394860/94‑1 (MQ=60)
                                       CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGGCTTCGTTTTCATCACTGTGTT                                                       >  SRR4302545.898114/1‑94 (MQ=60)
                                       CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTTTT                                                       >  SRR4302545.6574644/1‑94 (MQ=60)
                                       CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTT                                                       >  SRR4302545.6139899/1‑94 (MQ=60)
                                       CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTT                                                       >  SRR4302545.4851312/1‑94 (MQ=60)
                                        AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTT                                                      >  SRR4302545.7044915/1‑94 (MQ=60)
                                        AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTT                                                      >  SRR4302545.7045205/1‑94 (MQ=60)
                                        AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTT                                                      >  SRR4302545.8852786/1‑94 (MQ=60)
                                        AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTT                                                      >  SRR4302545.10107136/1‑94 (MQ=60)
                                         GTATTTCACGGTGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     <  SRR4302545.5555072/94‑1 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     <  SRR4302545.6967731/94‑1 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     <  SRR4302545.9009980/94‑1 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     >  SRR4302545.1684763/1‑94 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     <  SRR4302545.9107684/94‑1 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     >  SRR4302545.3934174/1‑94 (MQ=60)
                                         GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTT                                                     <  SRR4302545.7167538/94‑1 (MQ=60)
                                          TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTG                                                    <  SRR4302545.5520357/94‑1 (MQ=60)
                                          TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTG                                                    <  SRR4302545.5520358/94‑1 (MQ=60)
                                          TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTG                                                    <  SRR4302545.10167724/94‑1 (MQ=60)
                                          TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTG                                                    <  SRR4302545.1511564/94‑1 (MQ=60)
                                            TTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAT                                                  <  SRR4302545.2293244/94‑1 (MQ=60)
                                             TTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATT                                                 <  SRR4302545.5614638/94‑1 (MQ=60)
                                              TCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTA                                                <  SRR4302545.7286924/94‑1 (MQ=60)
                                              TCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTA                                                <  SRR4302545.821659/94‑1 (MQ=60)
                                               CACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTAC                                               >  SRR4302545.6278538/1‑94 (MQ=60)
                                                ACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACA                                              <  SRR4302545.10268416/94‑1 (MQ=60)
                                                 CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAG                                             >  SRR4302545.10338114/1‑94 (MQ=60)
                                                 CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAG                                             <  SRR4302545.8125684/94‑1 (MQ=60)
                                                   GGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCATTGTGTTTTGATTACAGCG                                           <  SRR4302545.4510843/94‑1 (MQ=60)
                                                      AGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGG                                        <  SRR4302545.7590139/94‑1 (MQ=60)
                                                      AGTTATGCCTTCTATACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTATGATTACAGCGCGG                                        <  SRR4302545.7590138/94‑1 (MQ=60)
                                                       GTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGC                                       <  SRR4302545.1812145/94‑1 (MQ=60)
                                                         TATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGA                                     >  SRR4302545.2584163/1‑94 (MQ=60)
                                                          ATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGAT                                    <  SRR4302545.7395184/94‑1 (MQ=60)
                                                            GCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAA                                  >  SRR4302545.9300954/1‑94 (MQ=60)
                                                            GCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAA                                  <  SRR4302545.1270003/94‑1 (MQ=60)
                                                             CCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGGATGCTCCGGGCTTCGTTTTCATTACTGTGTTTTTATTACAGCGCGGGGATAAA                                 >  SRR4302545.8037604/1‑94 (MQ=47)
                                                             CCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAC                                 >  SRR4302545.10308951/1‑94 (MQ=60)
                                                             CCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGGTTTGATTACAGCGCGGCGATAAC                                 >  SRR4302545.7416427/1‑94 (MQ=60)
                                                             CCTTCTTGACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAC                                 <  SRR4302545.10123296/94‑1 (MQ=60)
                                                              CTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACA                                >  SRR4302545.6810329/1‑94 (MQ=60)
                                                               TTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAG                               >  SRR4302545.1912025/1‑94 (MQ=60)
                                                               TTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAG                               >  SRR4302545.9055283/1‑94 (MQ=60)
                                                                TCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGC                              >  SRR4302545.472606/1‑94 (MQ=60)
                                                                TCTGTACCATGTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGC                              <  SRR4302545.6650533/94‑1 (MQ=60)
                                                                 CTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCC                             <  SRR4302545.8227395/94‑1 (MQ=60)
                                                                 CTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCC                             >  SRR4302545.6173477/1‑94 (MQ=60)
                                                                  TTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            >  SRR4302545.9133973/1‑94 (MQ=60)
                                                                  TTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            <  SRR4302545.3991593/94‑1 (MQ=60)
                                                                  TTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            <  SRR4302545.9347313/94‑1 (MQ=60)
                                                                  TTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            <  SRR4302545.8976613/94‑1 (MQ=60)
                                                                  TTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGCCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            >  SRR4302545.9133974/1‑94 (MQ=60)
                                                                  TTTACAATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            <  SRR4302545.4289211/94‑1 (MQ=60)
                                                                  TTGACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT                            <  SRR4302545.10322451/94‑1 (MQ=60)
                                                                   TTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTG                           <  SRR4302545.8591082/94‑1 (MQ=60)
                                                                   TTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTG                           <  SRR4302545.9696707/94‑1 (MQ=60)
                                                                   TTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTG                           <  SRR4302545.3245349/94‑1 (MQ=60)
                                                                    TACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGC                          >  SRR4302545.1092284/1‑94 (MQ=60)
                                                                    TACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGC                          <  SRR4302545.2063322/94‑1 (MQ=60)
                                                                     ACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCT                         <  SRR4302545.5113549/94‑1 (MQ=60)
                                                                     ACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCT                         >  SRR4302545.3095858/1‑94 (MQ=60)
                                                                      CCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG                        <  SRR4302545.2312412/94‑1 (MQ=60)
                                                                      CCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG                        <  SRR4302545.7199808/94‑1 (MQ=60)
                                                                      CCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG                        <  SRR4302545.128743/94‑1 (MQ=60)
                                                                      CCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG                        >  SRR4302545.9040535/1‑94 (MQ=60)
                                                                       CATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT                       >  SRR4302545.352385/1‑94 (MQ=60)
                                                                       CATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT                       >  SRR4302545.8504842/1‑94 (MQ=60)
                                                                       CATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT                       <  SRR4302545.8565225/94‑1 (MQ=60)
                                                                       CATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT                       >  SRR4302545.10894326/1‑94 (MQ=60)
                                                                        ATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTT                      <  SRR4302545.4029663/94‑1 (MQ=60)
                                                                        ATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTT                      >  SRR4302545.1265281/1‑94 (MQ=60)
                                                                         TTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTC                     >  SRR4302545.1629322/1‑94 (MQ=60)
                                                                         TTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTC                     >  SRR4302545.6542702/1‑94 (MQ=60)
                                                                          TTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA                    <  SRR4302545.3254309/94‑1 (MQ=60)
                                                                          TTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA                    <  SRR4302545.1954927/94‑1 (MQ=60)
                                                                          TTCTGTAAGAGAAAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA                    <  SRR4302545.2093529/94‑1 (MQ=60)
                                                                           TCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAA                   <  SRR4302545.8291668/94‑1 (MQ=60)
                                                                            CTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGAGATAACAGCCTGCTGTTCAAT                  >  SRR4302545.10012994/1‑94 (MQ=60)
                                                                             TGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATC                 <  SRR4302545.10542209/94‑1 (MQ=60)
                                                                             TGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCCCCTGTTCAATC                 >  SRR4302545.10591462/1‑94 (MQ=60)
                                                                              GTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA                >  SRR4302545.3403170/1‑94 (MQ=60)
                                                                              GTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA                <  SRR4302545.9223112/94‑1 (MQ=60)
                                                                              GTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA                >  SRR4302545.1105584/1‑94 (MQ=60)
                                                                               TAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAG               <  SRR4302545.3642935/94‑1 (MQ=60)
                                                                                AAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT              >  SRR4302545.8623278/1‑94 (MQ=60)
                                                                                 AGAGATAAAAAAGGGCGGG‑‑GCATGCTCCCGGCTTCCGTTTCATCACTGTGTTTTGATTTCAGCGCGGCGATAAAAGCCTGCTGTTTAATCAGAT             >  SRR4302545.2295608/1‑94 (MQ=33)
                                                                                 AGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTT             >  SRR4302545.5067622/1‑94 (MQ=60)
                                                                                  GAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTT            >  SRR4302545.5313225/1‑94 (MQ=60)
                                                                                  GAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTT            <  SRR4302545.2745127/94‑1 (MQ=60)
                                                                                   aagatAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTT            <  SRR4302545.2584214/89‑1 (MQ=60)
                                                                                    GATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCG          <  SRR4302545.10691702/94‑1 (MQ=60)
                                                                                      atAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCTCTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGC         <  SRR4302545.7435344/92‑1 (MQ=60)
                                                                                      atAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGC         >  SRR4302545.7132017/3‑94 (MQ=60)
                                                                                       TAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCT        <  SRR4302545.5024672/94‑1 (MQ=60)
                                                                                        AAAAAAGGCCGGAGCATGCTCCGTCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTT       <  SRR4302545.7404722/94‑1 (MQ=60)
                                                                                        AAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATTACTGTGTTTTTATTACAGCGCGGCGATAACAGCCCGCTGTTCTATCCGTTTCTCTT       >  SRR4302545.6257659/1‑94 (MQ=56)
                                                                                        AAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCGCTGTGTTTTGATTCCAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTT       <  SRR4302545.7404721/94‑1 (MQ=60)
                                                                                        AAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTT       <  SRR4302545.1601845/94‑1 (MQ=60)
                                                                                        AAAAAAGGCCGGGGCATGCTCCCGCCTTCGTTTTCATCACTGTGTTTTTATTTCAGCGCCGCCATAACCACCTGCTGTTCAATCAGTTTTGCTT       >  SRR4302545.6257658/1‑94 (MQ=24)
                                                                                         AAAAAGGCCGGAGCGTGCTCCGGCCCTCGGTTTTATCCCTGTGTTTTGATTACAGCCCGGCGATAACAGACTGCTGTTCAATCAGTTTCGCTTT      >  SRR4302545.6070380/1‑94 (MQ=45)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGGCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTTAATCAGTTTCGCTTT      <  SRR4302545.8630998/94‑1 (MQ=60)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT      >  SRR4302545.1690662/1‑94 (MQ=60)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT      >  SRR4302545.5553965/1‑94 (MQ=60)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT      >  SRR4302545.5332556/1‑94 (MQ=60)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT      <  SRR4302545.9609211/94‑1 (MQ=60)
                                                                                         AAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT      <  SRR4302545.9609212/94‑1 (MQ=60)
                                                                                         AAAAAGGCCGGGGCATGCTCCGGCCTTCGATTTCATCACTGTGTTTTGATTACAGCGCGGAGATAACAGACTGCTGTTCAATCAGTTTCGCTTT      >  SRR4302545.6319218/1‑94 (MQ=60)
                                                                                          AAAAGGCGGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC     <  SRR4302545.4322562/94‑1 (MQ=60)
                                                                                          AAAAGGCCGGAGGATGCTCCGGCCTTCGTTTTCATCACTGTGGTTTTATTACAGCGCGGCGATAACAGCCCGCTGTTCCATCCATTTCGCTTTC     >  SRR4302545.80882/1‑94 (MQ=43)
                                                                                          AAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC     >  SRR4302545.5776126/1‑94 (MQ=60)
                                                                                          AAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC     >  SRR4302545.5776127/1‑94 (MQ=60)
                                                                                          AAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC     >  SRR4302545.647852/1‑94 (MQ=60)
                                                                                          AAAAGGCCGGAGCATGCTCCGGCCTTCGGTTTTATCACTGTGTTTTGATTACAGCGCGGCGATTACAGCCTGGTGTTCAATCAGTTTCGCTTTG     >  SRR4302545.80597/1‑94 (MQ=60)
                                                                                            AAGGGCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGC   >  SRR4302545.10675140/1‑94 (MQ=60)
                                                                                            AAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGC   >  SRR4302545.3933589/1‑94 (MQ=60)
                                                                                            AAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGC   >  SRR4302545.8926659/1‑94 (MQ=60)
                                                                                            AAGGACGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGC   >  SRR4302545.10675139/1‑94 (MQ=60)
                                                                                             AGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCT  >  SRR4302545.794047/1‑94 (MQ=60)
                                                                                             |                                                                                               
AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCT  >  NC_000913/4478410‑4478598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: