Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑G‑CATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > NC_000913/4474804‑4474961
|
GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302545.7523709/94‑1 (MQ=30)
GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302545.4731766/94‑1 (MQ=30)
GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302545.3964679/94‑1 (MQ=30)
AATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGC > SRR4302545.9882020/1‑94 (MQ=28)
AATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGC > SRR4302545.6801466/1‑94 (MQ=28)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG > SRR4302545.9438809/1‑94 (MQ=26)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG > SRR4302545.5045915/1‑94 (MQ=26)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG > SRR4302545.3670089/1‑94 (MQ=26)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG > SRR4302545.6216614/1‑94 (MQ=26)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG > SRR4302545.6216615/1‑94 (MQ=26)
TAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGGTTGTATTT‑‑‑‑‑‑‑‑CCCGG‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGA > SRR4302545.9937122/1‑94 (MQ=21)
TAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGA > SRR4302545.2780403/1‑94 (MQ=25)
AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC < SRR4302545.6701607/94‑1 (MQ=23)
AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302545.8417506/1‑94 (MQ=23)
GACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACC > SRR4302545.8662901/1‑94 (MQ=23)
CCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCAT > SRR4302545.4129452/1‑94 (MQ=23)
CCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCAT < SRR4302545.10474255/94‑1 (MQ=23)
CCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCCACCAT > SRR4302545.5618758/1‑94 (MQ=18)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTATTGAGCGTCGCGACCATC > SRR4302545.9415001/1‑94 (MQ=16)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC < SRR4302545.8115135/94‑1 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302545.5733451/1‑94 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302545.2909875/1‑94 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC < SRR4302545.7526877/94‑1 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302545.2110318/1‑94 (MQ=23)
ATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302545.6503032/1‑94 (MQ=23)
ATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302545.5499902/1‑94 (MQ=23)
ATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302545.4656671/1‑94 (MQ=23)
TCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC > SRR4302545.2453545/1‑94 (MQ=23)
TCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC > SRR4302545.10710326/1‑94 (MQ=23)
CACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCG > SRR4302545.1195691/1‑94 (MQ=23)
CACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCG > SRR4302545.1195690/1‑94 (MQ=23)
ACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGC > SRR4302545.2873913/1‑94 (MQ=23)
ACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGC > SRR4302545.1574837/1‑94 (MQ=23)
CTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT > SRR4302545.8948230/1‑94 (MQ=25)
CTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT > SRR4302545.1029520/1‑94 (MQ=25)
TGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT < SRR4302545.7351882/94‑1 (MQ=26)
GCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTT > SRR4302545.2612205/1‑94 (MQ=28)
CATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG < SRR4302545.9944469/94‑1 (MQ=30)
CATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG < SRR4302545.1437585/94‑1 (MQ=30)
ataAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302545.1108560/4‑94 (MQ=33)
taAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT < SRR4302545.37746/92‑1 (MQ=34)
A‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA < SRR4302545.973941/94‑1 (MQ=36)
A‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA > SRR4302545.260226/1‑94 (MQ=36)
A‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA < SRR4302545.6794667/94‑1 (MQ=36)
AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG < SRR4302545.3174623/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.6644754/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.7616431/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > SRR4302545.8868179/1‑94 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.6644756/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.3003012/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.10461918/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > SRR4302545.10009878/1‑94 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTC‑CC‑‑GACATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302545.3011818/94‑1 (MQ=36)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > SRR4302545.5824306/1‑94 (MQ=38)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302545.120155/94‑1 (MQ=38)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302545.240236/94‑1 (MQ=38)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302545.8485116/94‑1 (MQ=38)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302545.47005/94‑1 (MQ=38)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302545.2642358/94‑1 (MQ=38)
AATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATG < SRR4302545.1382214/94‑1 (MQ=40)
AATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATG > SRR4302545.534310/1‑94 (MQ=40)
ATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGGTAGTATGC < SRR4302545.785688/94‑1 (MQ=32)
ATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGC > SRR4302545.7913786/1‑94 (MQ=42)
TGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA < SRR4302545.2204235/94‑1 (MQ=44)
TGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA > SRR4302545.1719107/1‑94 (MQ=44)
TGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA > SRR4302545.622930/1‑94 (MQ=44)
GTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑G‑CATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302545.4652201/94‑1 (MQ=46)
AATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > SRR4302545.8038863/1‑94 (MQ=60)
AATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > SRR4302545.8449551/1‑94 (MQ=60)
AATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > SRR4302545.3540320/1‑94 (MQ=60)
AATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA < SRR4302545.5548122/94‑1 (MQ=60)
|
GAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑G‑CATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGA > NC_000913/4474804‑4474961
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
