Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	72,647	A→G	L94P (CTG→CCG)	yabJ ←	putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	72,647	0	A	G	95.9%	766.5 / 15.1	243	L94P (CTG→CCG)	yabJ	putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base A (5/5); new base G (121/112); total (126/117)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01

Only 100 of 256 total aligned reads displayed.

GCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTT  >  NC_000913/72557‑72736

gcCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGc                                                                                         >  2:2040261/1‑93 (MQ=255)

gcCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGc                                                                                         >  1:5873637/1‑93 (MQ=255)

 ccATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGcc                                                                                        >  2:2133091/1‑93 (MQ=255)

  cATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGccc                                                                                       >  2:1614817/1‑93 (MQ=255)

  cATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGccc                                                                                       >  1:5085725/1‑93 (MQ=255)

    ttAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCgc                                                                                     >  1:80597/1‑92 (MQ=255)

    ttAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGa                                                                                     <  1:5916106/93‑1 (MQ=255)

    ttAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGa                                                                                     >  1:1584902/1‑93 (MQ=255)

     tAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGAt                                                                                    <  2:5987111/93‑1 (MQ=255)

       aaTTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGt                                                                                  >  2:4978001/1‑93 (MQ=255)

         ttATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTc                                                                                <  1:5534521/93‑1 (MQ=255)

         ttATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTc                                                                                <  2:2344388/93‑1 (MQ=255)

         ttATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTc                                                                                <  1:378712/93‑1 (MQ=255)

         ttATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTc                                                                                <  2:2771681/93‑1 (MQ=255)

         ttATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGGTCAGTTTCAATCCCGGATTTAGTCCCGGCCCGATGTTc                                                                                >  2:6347522/1‑93 (MQ=255)

          tATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCt                                                                               <  2:4786824/93‑1 (MQ=255)

            tCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCtgt                                                                             <  2:3364751/93‑1 (MQ=255)

              aaTCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGc                                                                           <  1:309891/93‑1 (MQ=255)

              aaTCCCCATCTGGCGGGCGATAGCGTGCATTTACCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGc                                                                           <  2:3656638/93‑1 (MQ=255)

                tCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGa                                                                         >  2:4701268/1‑93 (MQ=255)

                  cccATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGAcc                                                                       <  1:492636/93‑1 (MQ=255)

                   ccATCTGGCGGGCGTTAGCGTGCATTTTCCACTGCTGTACCGCGTTCAGTTTCAATCCCGGATCTAGCCCCGGCCCGATGTTCTGTGAGAGCg                                                                      >  2:3182930/1‑93 (MQ=255)

                    cATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGt                                                                     >  2:4540663/1‑93 (MQ=255)

                     aTCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTc                                                                    <  1:422639/93‑1 (MQ=255)

                      tCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCa                                                                   <  1:1404814/93‑1 (MQ=255)

                      tCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCAGATGTTCTGTGCGACCGTCa                                                                   >  1:3214368/1‑93 (MQ=255)

                         ggcgggcgATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGt                                                                <  2:3252372/93‑1 (MQ=255)

                         ggcgggcgATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGt                                                                <  2:3475936/93‑1 (MQ=255)

                         ggcgggcgATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGt                                                                >  2:5240110/1‑93 (MQ=255)

                             ggccATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCt                                                            <  1:5965596/93‑1 (MQ=255)

                                gATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGaa                                                         <  2:3964888/93‑1 (MQ=255)

                                gATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGaa                                                         >  1:2496557/1‑93 (MQ=255)

                                gATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGaa                                                         >  1:1631450/1‑93 (MQ=255)

                                gATAGCGCGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGaa                                                         >  2:6110353/1‑93 (MQ=255)

                                 aTAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAc                                                        <  1:5244570/93‑1 (MQ=255)

                                 aTAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAc                                                        <  1:2394877/93‑1 (MQ=255)

                                  tAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACa                                                       >  2:4178557/1‑93 (MQ=255)

                                    gCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAgg                                                     >  1:6116811/1‑93 (MQ=255)

                                    gCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAgg                                                     >  1:4060092/1‑93 (MQ=255)

                                     cGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGgt                                                    <  1:2898134/93‑1 (MQ=255)

                                     cGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGgt                                                    >  1:1321318/1‑93 (MQ=255)

                                      gTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGgtt                                                   >  1:3385966/1‑93 (MQ=255)

                                      gTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGgtt                                                   >  1:89298/1‑93 (MQ=255)

                                        gCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGgttgt                                                 <  2:6080298/93‑1 (MQ=255)

                                          aTTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTtc                                               <  1:5574183/93‑1 (MQ=255)

                                          aTTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTtc                                               <  2:3063745/93‑1 (MQ=255)

                                           ttttCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTtct                                              >  1:2034063/1‑93 (MQ=255)

                                            tttCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTtctc                                             >  2:133537/1‑93 (MQ=255)

                                                cccTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGa                                         <  1:4616812/93‑1 (MQ=255)

                                                cccTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGa                                         >  2:5097972/1‑93 (MQ=255)

                                                cccTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGa                                         >  2:1130535/1‑93 (MQ=255)

                                                 ccTGCTGTCCCGCGTTCAGCTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGaa                                        <  2:37901/93‑1 (MQ=255)

                                                    gctgTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACa                                     <  1:1862413/93‑1 (MQ=255)

                                                    gctgTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTAAGGTGGCTGAACAGGTTGTTCTCATGAAACa                                     >  2:4573560/1‑93 (MQ=255)

                                                     ctgTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAg                                    >  2:2194836/1‑93 (MQ=255)

                                                      tgTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGc                                   <  1:118821/93‑1 (MQ=255)

                                                      tgTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGc                                   >  1:1104004/1‑93 (MQ=255)

                                                       gTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCa                                  >  2:5151171/1‑93 (MQ=255)

                                                       gTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCa                                  <  1:2121761/93‑1 (MQ=255)

                                                        tACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCAt                                 <  2:140365/93‑1 (MQ=255)

                                                          ccGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCg                               <  1:2152209/93‑1 (MQ=255)

                                                          ccGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCg                               >  2:1891610/1‑93 (MQ=255)

                                                           cgcgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGa                              <  1:676087/93‑1 (MQ=255)

                                                           cgcgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGa                              >  1:4744965/1‑93 (MQ=255)

                                                            gcgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGac                             >  2:722308/1‑93 (MQ=255)

                                                            gcgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGac                             <  1:1250191/93‑1 (MQ=255)

                                                            gcgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGac                             >  2:2637613/1‑93 (MQ=255)

                                                             cgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGaca                            >  2:1799169/1‑93 (MQ=255)

                                                             cgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGaca                            <  1:6016900/93‑1 (MQ=255)

                                                             cgTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGaca                            <  2:2544366/93‑1 (MQ=255)

                                                              gTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGacac                           >  1:2805314/1‑93 (MQ=255)

                                                               ttCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACAcc                          >  1:1792123/1‑93 (MQ=255)

                                                                tCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCg                         >  2:5391362/1‑93 (MQ=255)

                                                                 cAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCgg                        <  1:3861937/93‑1 (MQ=255)

                                                                 cAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCATGAAACAGCATCGACACCgg                        <  1:3303546/93‑1 (MQ=255)

                                                                  aGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGa                       <  1:1491654/93‑1 (MQ=255)

                                                                  aGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGa                       <  1:5349585/93‑1 (MQ=255)

                                                                   gTTGCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGAc                      <  1:510788/93‑1 (MQ=255)

                                                                    tttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACTGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACg                     >  1:4554183/1‑93 (MQ=255)

                                                                    tttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACg                     >  2:108389/1‑93 (MQ=255)

                                                                    tttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACg                     <  1:4988579/93‑1 (MQ=255)

                                                                     ttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACgg                    <  2:1549117/93‑1 (MQ=255)

                                                                     ttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACgg                    >  1:3934228/1‑93 (MQ=255)

                                                                     ttCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACgc                    >  2:2745166/1‑92 (MQ=255)

                                                                      tCAATCCCGGATTTAGCCCCGGCCCGTTGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGc                   <  1:3605305/93‑1 (MQ=255)

                                                                      tCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACggg                   >  1:2968388/1‑92 (MQ=255)

                                                                          tCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGa               >  1:6417728/1‑93 (MQ=255)

                                                                          tCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGa               <  2:1850423/93‑1 (MQ=255)

                                                                           cccGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAc              <  1:3651780/93‑1 (MQ=255)

                                                                            ccGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcg             <  1:6149476/93‑1 (MQ=255)

                                                                             cGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcgg            <  1:5416893/93‑1 (MQ=255)

                                                                              ggATTGAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggc           <  1:3523042/93‑1 (MQ=255)

                                                                               gATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcg          >  2:4387585/1‑93 (MQ=255)

                                                                               gATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcg          <  1:3804319/93‑1 (MQ=255)

                                                                               gATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcg          <  2:141484/93‑1 (MQ=255)

                                                                               gATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcg          >  1:779384/1‑93 (MQ=255)

                                                                                aTTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcgg         >  2:3602742/1‑93 (MQ=255)

                                                                                aTTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcgg         <  2:5811034/93‑1 (MQ=255)

                                                                                aTTTAGCCCCGGCCCGATGCTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAcggcgg         >  2:6317974/1‑93 (MQ=255)

                                                                                 tttAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACggcggc        >  2:43402/1‑93 (MQ=255)

GCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTT  >  NC_000913/72557‑72736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTGTGT  >  NC_000913/72554‑72740

CGCGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCG                                                                                               >  SRR4302537.514327/1‑94 (MQ=60)

CGCGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCG                                                                                               >  SRR4302537.1589059/1‑94 (MQ=60)

  CGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGC                                                                                             >  SRR4302537.5757243/1‑94 (MQ=60)

  CGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGC                                                                                             >  SRR4302537.5122980/1‑94 (MQ=60)

  CGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGC                                                                                             >  SRR4302537.5913928/1‑94 (MQ=60)

   GCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCGCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCC                                                                                            >  SRR4302537.5963034/1‑94 (MQ=60)

    CCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCC                                                                                           >  SRR4302537.2849574/1‑94 (MQ=60)

    CCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCC                                                                                           >  SRR4302537.5441076/1‑94 (MQ=60)

    CCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCC                                                                                           >  SRR4302537.5120735/1‑94 (MQ=60)

     CATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCG                                                                                          <  SRR4302537.3636710/94‑1 (MQ=60)

      ATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGC                                                                                         >  SRR4302537.81189/1‑94 (MQ=60)

      ATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGA                                                                                         >  SRR4302537.5595918/1‑94 (MQ=60)

      ATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGA                                                                                         >  SRR4302537.1595980/1‑94 (MQ=60)

       TTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGAT                                                                                        <  SRR4302537.5956702/94‑1 (MQ=60)

          AATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTT                                                                                     >  SRR4302537.3821683/1‑94 (MQ=60)

          AATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTT                                                                                     <  SRR4302537.1411684/94‑1 (MQ=60)

           ATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTC                                                                                    >  SRR4302537.3164748/1‑94 (MQ=60)

            TTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCT                                                                                   >  SRR4302537.6520480/1‑94 (MQ=60)

            TTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCT                                                                                   <  SRR4302537.381339/94‑1 (MQ=60)

            TTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCT                                                                                   <  SRR4302537.5572300/94‑1 (MQ=60)

             TATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTG                                                                                  <  SRR4302537.6367972/94‑1 (MQ=60)

             TATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTG                                                                                  <  SRR4302537.515479/94‑1 (MQ=60)

             TATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTG                                                                                  <  SRR4302537.1957509/94‑1 (MQ=60)

                 AATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCG                                                                              <  SRR4302537.312036/94‑1 (MQ=60)

                 AATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCG                                                                              <  SRR4302537.5034968/94‑1 (MQ=60)

                    CCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACC                                                                           <  SRR4302537.1853974/94‑1 (MQ=60)

                    CCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACC                                                                           >  SRR4302537.1763347/1‑94 (MQ=60)

                    CCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACC                                                                           <  SRR4302537.2133109/94‑1 (MQ=60)

                     CCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACTGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCG                                                                          >  SRR4302537.4893595/1‑94 (MQ=60)

                     CCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCG                                                                          <  SRR4302537.496030/94‑1 (MQ=60)

                      CCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGT                                                                         >  SRR4302537.4985137/1‑94 (MQ=60)

                      CCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGT                                                                         >  SRR4302537.3796564/1‑94 (MQ=60)

                       CATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTC                                                                        >  SRR4302537.5921744/1‑94 (MQ=60)

                        ATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCA                                                                       <  SRR4302537.425569/94‑1 (MQ=60)

                        ATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCA                                                                       <  SRR4302537.6064224/94‑1 (MQ=60)

                        ATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCA                                                                       >  SRR4302537.1525308/1‑94 (MQ=60)

                        ATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCA                                                                       >  SRR4302537.840497/1‑94 (MQ=60)

                        ATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCAGATGTTCTGTGCGACCGTCA                                                                       >  SRR4302537.3236990/1‑94 (MQ=60)

                         TCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAG                                                                      <  SRR4302537.1414598/94‑1 (MQ=60)

                         TCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAG                                                                      <  SRR4302537.3724426/94‑1 (MQ=60)

                          CTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGG                                                                     >  SRR4302537.5070419/1‑94 (MQ=60)

                          CTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGG                                                                     <  SRR4302537.1217995/94‑1 (MQ=60)

                           TGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGT                                                                    <  SRR4302537.2973248/94‑1 (MQ=60)

                            GGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTG                                                                   >  SRR4302537.2964972/1‑94 (MQ=60)

                               GGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCT                                                                <  SRR4302537.4254728/94‑1 (MQ=60)

                               GGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCT                                                                <  SRR4302537.4609299/94‑1 (MQ=60)

                                GGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCTGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTG                                                               <  SRR4302537.2188796/94‑1 (MQ=60)

                                GGCCATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTG                                                               <  SRR4302537.6006539/94‑1 (MQ=60)

                                  CGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAA                                                             >  SRR4302537.1642878/1‑94 (MQ=60)

                                  CGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAA                                                             >  SRR4302537.2514131/1‑94 (MQ=60)

                                   GATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAC                                                            >  SRR4302537.3983921/1‑94 (MQ=60)

                                   GATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAC                                                            >  SRR4302537.692126/1‑94 (MQ=60)

                                   GATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAC                                                            >  SRR4302537.4847675/1‑94 (MQ=60)

                                   GATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAAC                                                            >  SRR4302537.5285317/1‑94 (MQ=60)

                                    ATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACA                                                           <  SRR4302537.2411741/94‑1 (MQ=60)

                                    ATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACA                                                           <  SRR4302537.5280660/94‑1 (MQ=60)

                                    ATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACA                                                           >  SRR4302537.1330781/1‑94 (MQ=60)

                                      AGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGG                                                         >  SRR4302537.6158848/1‑94 (MQ=60)

                                      AGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGG                                                         <  SRR4302537.5218122/94‑1 (MQ=60)

                                      AGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGG                                                         >  SRR4302537.793102/1‑94 (MQ=60)

                                      AGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGG                                                         >  SRR4302537.4088465/1‑94 (MQ=60)

                                       GCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGT                                                        >  SRR4302537.1330528/1‑94 (MQ=60)

                                        CGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTT                                                       >  SRR4302537.89947/1‑94 (MQ=60)

                                        CGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTT                                                       <  SRR4302537.2918498/94‑1 (MQ=60)

                                        CGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTT                                                       <  SRR4302537.3659673/94‑1 (MQ=60)

                                        CGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTT                                                       >  SRR4302537.3409955/1‑94 (MQ=60)

                                         GTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTG                                                      >  SRR4302537.1493444/1‑94 (MQ=60)

                                         GTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTG                                                      >  SRR4302537.2125593/1‑94 (MQ=60)

                                         GTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTG                                                      >  SRR4302537.549203/1‑94 (MQ=60)

                                            CATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACATGTTGTTC                                                   >  SRR4302537.5794543/1‑94 (MQ=60)

                                             ATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCT                                                  <  SRR4302537.5612282/94‑1 (MQ=60)

                                             ATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCT                                                  >  SRR4302537.2048241/1‑94 (MQ=60)

                                                TTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCT                                               >  SRR4302537.2459848/1‑94 (MQ=60)

                                                 TCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTG                                              >  SRR4302537.968572/1‑94 (MQ=60)

                                                 TCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTG                                              >  SRR4302537.3508700/1‑94 (MQ=60)

                                                   CCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAA                                            <  SRR4302537.1268329/94‑1 (MQ=60)

                                                   CCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAA                                            <  SRR4302537.4648786/94‑1 (MQ=60)

                                                     CTGCTGTACCGCGTTCAGTTTCAATCCCGGATGTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAAC                                          <  SRR4302537.809789/94‑1 (MQ=60)

                                                       GCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAG                                        >  SRR4302537.6073873/1‑94 (MQ=60)

                                                       GCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAG                                        <  SRR4302537.4670850/94‑1 (MQ=60)

                                                       GCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAG                                        <  SRR4302537.1875386/94‑1 (MQ=60)

                                                        CTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGC                                       >  SRR4302537.1111626/1‑94 (MQ=60)

                                                        CTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGC                                       >  SRR4302537.6206554/1‑94 (MQ=60)

                                                         TGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCA                                      <  SRR4302537.5578075/94‑1 (MQ=60)

                                                         TGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCA                                      <  SRR4302537.119673/94‑1 (MQ=60)

                                                         TGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCA                                      >  SRR4302537.3832107/1‑94 (MQ=60)

                                                         TGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCA                                      <  SRR4302537.3846900/94‑1 (MQ=60)

                                                          GTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCAT                                     <  SRR4302537.2136691/94‑1 (MQ=60)

                                                          GTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCAT                                     <  SRR4302537.4656702/94‑1 (MQ=60)

                                                          GTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCAT                                     >  SRR4302537.2142506/1‑94 (MQ=60)

                                                           TACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATC                                    <  SRR4302537.3282800/94‑1 (MQ=60)

                                                           TACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATC                                    <  SRR4302537.6056866/94‑1 (MQ=60)

                                                            ACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGTCCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCG                                   >  SRR4302537.3073488/1‑94 (MQ=60)

                                                             CCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGA                                  <  SRR4302537.2167380/94‑1 (MQ=60)

                                                             CCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGA                                  >  SRR4302537.4777752/1‑94 (MQ=60)

                                                             CCGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGA                                  <  SRR4302537.1609876/94‑1 (MQ=60)

                                                              CGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGAC                                 >  SRR4302537.3597497/1‑94 (MQ=60)

                                                              CGCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGAC                                 <  SRR4302537.680719/94‑1 (MQ=60)

                                                               GCGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACA                                <  SRR4302537.1258895/94‑1 (MQ=60)

                                                                CGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACAC                               <  SRR4302537.6058238/94‑1 (MQ=60)

                                                                CGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACAC                               >  SRR4302537.2281397/1‑94 (MQ=60)

                                                                CGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACAC                               >  SRR4302537.2824922/1‑94 (MQ=60)

                                                                CGTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACAC                               <  SRR4302537.11672/94‑1 (MQ=60)

                                                                 GTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACC                              >  SRR4302537.1804633/1‑94 (MQ=60)

                                                                 GTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACC                              <  SRR4302537.3087261/94‑1 (MQ=60)

                                                                 GTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACC                              <  SRR4302537.174284/94‑1 (MQ=60)

                                                                 GTTCAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACC                              <  SRR4302537.669458/94‑1 (MQ=60)

                                                                  TTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCG                             >  SRR4302537.3981442/1‑94 (MQ=60)

                                                                    CAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGA                           <  SRR4302537.3888970/94‑1 (MQ=60)

                                                                    CAGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCATGAAACAGCATCGACACCGGA                           <  SRR4302537.3326903/94‑1 (MQ=60)

                                                                     AGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGAC                          <  SRR4302537.5386235/94‑1 (MQ=60)

                                                                     AGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGAC                          <  SRR4302537.1502044/94‑1 (MQ=60)

                                                                     AGTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGAC                          <  SRR4302537.1870748/94‑1 (MQ=60)

                                                                      GTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACTGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACG                         >  SRR4302537.4585696/1‑94 (MQ=60)

                                                                      GTTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACG                         >  SRR4302537.1518499/1‑94 (MQ=60)

                                                                      GTTGCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACG                         <  SRR4302537.514290/94‑1 (MQ=60)

                                                                       TTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGtacgc                        >  SRR4302537.4336682/1‑89 (MQ=60)

                                                                       TTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGG                        <  SRR4302537.5022956/94‑1 (MQ=60)

                                                                       TTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGG                        >  SRR4302537.3961719/1‑94 (MQ=60)

                                                                       TTTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGG                        >  SRR4302537.3961720/1‑94 (MQ=60)

                                                                        TTCAATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGG                       >  SRR4302537.2989200/1‑94 (MQ=60)

                                                                         TCAATCCCGGATTTAGCCCCGGCCCGTTGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCG                      <  SRR4302537.3630714/94‑1 (MQ=60)

                                                                         TCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCG                      <  SRR4302537.60075/94‑1 (MQ=60)

                                                                            ATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGA                   >  SRR4302537.2670183/1‑94 (MQ=60)

                                                                            ATCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGA                   >  SRR4302537.6461367/1‑94 (MQ=60)

                                                                             TCCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGAC                  <  SRR4302537.616840/94‑1 (MQ=60)

                                                                              CCCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACG                 <  SRR4302537.3677486/94‑1 (MQ=60)

                                                                               CCGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGG                <  SRR4302537.6191771/94‑1 (MQ=60)

                                                                                CGGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGC               <  SRR4302537.5453820/94‑1 (MQ=60)

                                                                                 GGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCG              <  SRR4302537.3360111/94‑1 (MQ=60)

                                                                                 GGATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCG              >  SRR4302537.784733/1‑94 (MQ=60)

                                                                                 GGATTGAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCG              <  SRR4302537.3547964/94‑1 (MQ=60)

                                                                                  GATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGG             >  SRR4302537.4468758/1‑94 (MQ=60)

                                                                                  GATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGG             <  SRR4302537.3831000/94‑1 (MQ=60)

                                                                                  GATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGG             <  SRR4302537.1236438/94‑1 (MQ=60)

                                                                                  GATTTAGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGG             <  SRR4302537.346784/94‑1 (MQ=60)

                                                                                       AGCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAG        >  SRR4302537.25320/1‑94 (MQ=60)

                                                                                        GCCCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGT       <  SRR4302537.5399692/94‑1 (MQ=60)

                                                                                          CCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTG     <  SRR4302537.3241467/94‑1 (MQ=60)

                                                                                          CCCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTG     >  SRR4302537.4074953/1‑94 (MQ=60)

                                                                                           CCGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTGT    <  SRR4302537.6493327/94‑1 (MQ=60)

                                                                                            CGGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTGTG   <  SRR4302537.1297534/94‑1 (MQ=60)

                                                                                             GGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTGTGT  <  SRR4302537.109182/94‑1 (MQ=60)

CGCGCCATTAAATTATCAATCCCCATCTGGCGGGCGATAGCGTGCATTTTCCCCTGCTGTACCGCGTTCAGTTTCAATCCCGGATTTAGCCCCAGCCCGATGTTCTGTGCGACCGTCAGGTGGCTGAACAGGTTGTTCTCCTGAAACAGCATCGACACCGGACGGCGTGACGGCGGCATAGTTGTGT  >  NC_000913/72554‑72740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`