Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	120,509	A→G	V348A (GTA→GCA)	aroP ←	aromatic amino acid transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	120,509	0	A	G	100.0%	867.5 / NA	245	V348A (GTA→GCA)	aroP	aromatic amino acid transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/127); total (118/127)

Only 100 of 253 total aligned reads displayed.

CTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTA  >  NC_000913/120419‑120598

cTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCg                                                                                         <  2:5687951/93‑1 (MQ=255)

 tAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTgcgc                                                                                        <  2:4398247/93‑1 (MQ=255)

  aaTCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGca                                                                                       <  1:5948239/93‑1 (MQ=255)

  aaTCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGca                                                                                       <  2:6387480/93‑1 (MQ=255)

  aaTCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGca                                                                                       <  2:3792397/93‑1 (MQ=255)

    tcatcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGcaca                                                                                     <  1:4991189/93‑1 (MQ=255)

    tcatcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGcaca                                                                                     <  2:4060098/93‑1 (MQ=255)

     catcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACaa                                                                                    <  2:5363725/93‑1 (MQ=255)

      atcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAAc                                                                                   >  2:347803/1‑93 (MQ=255)

      atcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAAc                                                                                   <  1:3693675/93‑1 (MQ=255)

      atcGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAAc                                                                                   >  2:3606907/1‑93 (MQ=255)

         gCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGcc                                                                                >  2:2563753/1‑93 (MQ=255)

          cccAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCg                                                                               >  2:1839600/1‑93 (MQ=255)

           ccAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGt                                                                              <  1:4127777/93‑1 (MQ=255)

            cAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGtt                                                                             >  1:4489523/1‑93 (MQ=255)

            cAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGtt                                                                             >  1:4094059/1‑93 (MQ=255)

            cAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGtt                                                                             >  2:585730/1‑93 (MQ=255)

              gTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAc                                                                           >  2:2246790/1‑93 (MQ=255)

               ttGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAcc                                                                          >  1:2405276/1‑93 (MQ=255)

               ttGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAcc                                                                          <  2:1713737/93‑1 (MQ=255)

                tGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCa                                                                         <  1:5987984/93‑1 (MQ=255)

                 gATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAg                                                                        >  2:3297728/1‑93 (MQ=255)

                   ttACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGtc                                                                      >  1:5392275/1‑92 (MQ=255)

                   ttACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTg                                                                      >  1:3317557/1‑93 (MQ=255)

                    tACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGc                                                                     <  1:6200423/93‑1 (MQ=255)

                    tACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGc                                                                     >  2:724505/1‑93 (MQ=255)

                    tACCAGTGCAGATACCACAAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGc                                                                     <  1:5331257/93‑1 (MQ=255)

                      ccAGTACAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGTCTCTGGGGCAAGGTAGTTAATCAATGCGCACAACGCAGTTACCAGTGTAg                                                                   >  2:4554634/1‑93 (MQ=255)

                       cAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGa                                                                  <  1:5443570/93‑1 (MQ=255)

                          tGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGacac                                                               <  2:4812170/93‑1 (MQ=255)

                           gCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACAcc                                                              <  1:3561216/93‑1 (MQ=255)

                              gATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGa                                                           >  2:3550785/1‑93 (MQ=255)

                              gATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGa                                                           >  1:5158210/1‑93 (MQ=255)

                              gATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGa                                                           <  2:841725/93‑1 (MQ=255)

                               aTACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGaa                                                          <  2:1984529/93‑1 (MQ=255)

                                 accaccAGCGCGATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATg                                                        <  2:2324923/93‑1 (MQ=255)

                                   caccaGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGt                                                      <  2:5790694/93‑1 (MQ=255)

                                     ccaGCGCCATTAACAGTCCGAAAGCGTACTCTGGGGCAAGGTAGTTAATCAGTGCGCACACCGCCGTTACCAGTGCAGACACCAGAATGGTAt                                                    <  2:1623269/93‑1 (MQ=255)

                                     ccaGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTAt                                                    >  2:3831826/1‑93 (MQ=255)

                                     ccaGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTAt                                                    >  2:4842172/1‑93 (MQ=255)

                                         cgcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAc                                                <  1:1064355/93‑1 (MQ=255)

                                         cgcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAc                                                <  2:360988/93‑1 (MQ=255)

                                         cgcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAc                                                <  2:4564142/93‑1 (MQ=255)

                                         cgcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAc                                                <  1:5726244/93‑1 (MQ=255)

                                         cgcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGGAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAc                                                >  1:2546259/1‑93 (MQ=255)

                                          gcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACt                                               <  1:4343388/93‑1 (MQ=255)

                                          gcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACt                                               <  1:2274628/93‑1 (MQ=255)

                                          gcCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGAAGACACCAGAATGGTATTTACt                                               <  1:1219913/93‑1 (MQ=255)

                                           ccATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTg                                              <  1:2741308/93‑1 (MQ=255)

                                           ccATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTg                                              <  2:1650476/93‑1 (MQ=255)

                                            cATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTgg                                             <  1:6376251/93‑1 (MQ=255)

                                            cATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTgg                                             <  1:3854733/93‑1 (MQ=255)

                                            cATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAAAATGGTATTTACTgg                                             >  1:777797/1‑93 (MQ=255)

                                              ttAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTa                                           >  1:5557817/1‑93 (MQ=255)

                                              ttAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTa                                           >  1:1910948/1‑93 (MQ=255)

                                              ttAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTa                                           <  1:4798491/93‑1 (MQ=255)

                                                aaCAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTaca                                         >  2:3398089/1‑93 (MQ=255)

                                                 aCAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTacac                                        >  1:4400951/1‑93 (MQ=255)

                                                   aGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTAcacca                                      <  2:1439294/93‑1 (MQ=255)

                                                   aGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTAcacca                                      <  1:1957629/93‑1 (MQ=255)

                                                   aGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTAcacca                                      >  1:6149759/1‑93 (MQ=255)

                                                    gTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTAcaccac                                     <  1:1635850/93‑1 (MQ=255)

                                                       cGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAGCGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGtt                                  >  1:3465590/1‑93 (MQ=255)

                                                        gAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGttt                                 >  1:2223066/1‑93 (MQ=255)

                                                         aaaGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTa                                >  1:6420663/1‑93 (MQ=255)

                                                          aaGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTAt                               <  1:1990390/93‑1 (MQ=255)

                                                          aaGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTAt                               <  1:2350225/93‑1 (MQ=255)

                                                           aGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATc                              >  1:47044/1‑93 (MQ=255)

                                                           aGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATc                              <  2:4481909/93‑1 (MQ=255)

                                                            gCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCg                             >  2:5709354/1‑93 (MQ=255)

                                                            gCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCg                             <  2:11831/93‑1 (MQ=255)

                                                             cGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGa                            <  2:2732331/93‑1 (MQ=255)

                                                               gACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACa                          <  2:2930514/93‑1 (MQ=255)

                                                               gACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACa                          <  1:1755419/93‑1 (MQ=255)

                                                               gACTCTGGGGCAAGGAAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACa                          <  1:1017372/93‑1 (MQ=255)

                                                                aCTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAg                         >  2:4187322/1‑93 (MQ=255)

                                                                  tctGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGAc                       <  2:6456924/93‑1 (MQ=255)

                                                                    tGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGc                     >  2:4270586/1‑93 (MQ=255)

                                                                     ggggCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGcc                    >  1:4913103/1‑93 (MQ=255)

                                                                     ggggCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGcc                    >  1:1312252/1‑93 (MQ=255)

                                                                      gggCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCa                   <  1:960532/93‑1 (MQ=255)

                                                                      gggCAAGGTAGTCAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCa                   >  1:6278314/1‑93 (MQ=255)

                                                                       ggCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAg                  >  1:2981168/1‑93 (MQ=255)

                                                                         cAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAgcg                >  1:3183580/1‑93 (MQ=255)

                                                                            ggTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCtt             <  1:1720737/93‑1 (MQ=255)

                                                                             gTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCttt            >  1:3155275/1‑93 (MQ=255)

                                                                               aGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTg          <  2:4738982/93‑1 (MQ=255)

                                                                                gTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTgg         >  2:549995/1‑93 (MQ=255)

                                                                                 ttAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGgc        <  2:5291483/93‑1 (MQ=255)

                                                                                  tAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGgcg       <  1:6446550/93‑1 (MQ=255)

                                                                                   aaTCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGgcgc      >  2:2518672/1‑93 (MQ=255)

                                                                                    aTCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCa     >  2:5202675/1‑93 (MQ=255)

                                                                                    aTCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCa     <  2:31665/93‑1 (MQ=255)

                                                                                    aTCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCa     >  2:2466767/1‑93 (MQ=255)

                                                                                    aTCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCa     <  2:1290759/93‑1 (MQ=255)

                                                                                     tCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCAt    >  1:4264604/1‑93 (MQ=255)

                                                                                     tCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCAt    <  2:5995531/93‑1 (MQ=255)

                                                                                       aGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTa  >  1:3923850/1‑93 (MQ=255)

                                                                                       aGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTa  <  1:461129/93‑1 (MQ=255)

                                                                                       aGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTa  <  2:4479124/93‑1 (MQ=255)

CTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTA  >  NC_000913/120419‑120598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGCTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACCCT  >  NC_000913/120416‑120602

AGGCTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTG                                                                                               >  SRR4302537.3556695/1‑94 (MQ=60)

AGGCTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTG                                                                                               <  SRR4302537.3475969/94‑1 (MQ=60)

 GGCTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGC                                                                                              >  SRR4302537.5825073/1‑94 (MQ=60)

     AATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCAC                                                                                          <  SRR4302537.5989068/94‑1 (MQ=60)

     AATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCAC                                                                                          <  SRR4302537.1255110/94‑1 (MQ=60)

     AATCATAGACCAGTTGATTACCGGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCAC                                                                                          <  SRR4302537.1172936/94‑1 (MQ=60)

      ATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACA                                                                                         >  SRR4302537.6475486/1‑94 (MQ=60)

      ATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACA                                                                                         <  SRR4302537.4554011/94‑1 (MQ=60)

       TCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAA                                                                                        <  SRR4302537.1919970/94‑1 (MQ=60)

       TCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAA                                                                                        <  SRR4302537.5025584/94‑1 (MQ=60)

       TCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAA                                                                                        <  SRR4302537.5025585/94‑1 (MQ=60)

        CATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAAC                                                                                       <  SRR4302537.4768831/94‑1 (MQ=60)

         ATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACG                                                                                      <  SRR4302537.3719669/94‑1 (MQ=60)

         ATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACG                                                                                      >  SRR4302537.5332010/1‑94 (MQ=60)

         ATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACG                                                                                      <  SRR4302537.3719670/94‑1 (MQ=60)

           CGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCC                                                                                    <  SRR4302537.3455620/94‑1 (MQ=60)

           CGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCC                                                                                    <  SRR4302537.881390/94‑1 (MQ=60)

            GCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGTGCAAGGTAGTTAATCAGTGCGCACAACGCCG                                                                                   >  SRR4302537.3317402/1‑94 (MQ=60)

             CCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGT                                                                                  >  SRR4302537.6424405/1‑94 (MQ=60)

              CCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTT                                                                                 <  SRR4302537.649443/94‑1 (MQ=60)

              CCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTT                                                                                 >  SRR4302537.3210087/1‑94 (MQ=60)

              CCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTT                                                                                 >  SRR4302537.4122653/1‑94 (MQ=60)

              CCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTT                                                                                 <  SRR4302537.4156589/94‑1 (MQ=60)

              CCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTT                                                                                 >  SRR4302537.4520581/1‑94 (MQ=60)

                AGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAC                                                                               >  SRR4302537.4415193/1‑94 (MQ=60)

                AGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAC                                                                               <  SRR4302537.2417205/94‑1 (MQ=60)

                 GTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACC                                                                              >  SRR4302537.2422207/1‑94 (MQ=60)

                  TTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCA                                                                             <  SRR4302537.5986511/94‑1 (MQ=60)

                   TGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAG                                                                            >  SRR4302537.4960424/1‑94 (MQ=60)

                   TGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAG                                                                            >  SRR4302537.4785395/1‑94 (MQ=60)

                   TGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAG                                                                            <  SRR4302537.6029108/94‑1 (MQ=60)

                   TGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAG                                                                            >  SRR4302537.6120641/1‑94 (MQ=60)

                    GATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACTCCGTTACCAGT                                                                           >  SRR4302537.1666868/1‑94 (MQ=60)

                    GATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGT                                                                           <  SRR4302537.3136199/94‑1 (MQ=60)

                    GATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGG                                                                           >  SRR4302537.1602472/1‑94 (MQ=60)

                     ATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTG                                                                          >  SRR4302537.3341031/1‑94 (MQ=60)

                     ATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTG                                                                          <  SRR4302537.5412324/94‑1 (MQ=60)

                     ATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTC                                                                          >  SRR4302537.5429106/1‑94 (MQ=60)

                       TACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCA                                                                        <  SRR4302537.6243155/94‑1 (MQ=60)

                       TACCAGTGCAGATACCACAAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCA                                                                        <  SRR4302537.5367828/94‑1 (MQ=60)

                        ACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAG                                                                       >  SRR4302537.1132538/1‑94 (MQ=60)

                        ACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAG                                                                       <  SRR4302537.3548233/94‑1 (MQ=60)

                         CCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGA                                                                      >  SRR4302537.6036705/1‑94 (MQ=60)

                         CCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTAACAGTGCCGA                                                                      >  SRR4302537.3180460/1‑94 (MQ=60)

                          CAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGAC                                                                     <  SRR4302537.5480705/94‑1 (MQ=60)

                              GCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCA                                                                 <  SRR4302537.3586338/94‑1 (MQ=60)

                                AGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGA                                                               >  SRR4302537.5193754/1‑94 (MQ=60)

                                AGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGA                                                               <  SRR4302537.1410910/94‑1 (MQ=60)

                                AGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGA                                                               >  SRR4302537.2500020/1‑94 (MQ=60)

                                AGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGA                                                               >  SRR4302537.2452758/1‑94 (MQ=60)

                                  ATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAAT                                                             <  SRR4302537.438275/94‑1 (MQ=60)

                                  ATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAAT                                                             <  SRR4302537.3882434/94‑1 (MQ=60)

                                   TACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATG                                                            <  SRR4302537.2322339/94‑1 (MQ=60)

                                    ACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGG                                                           <  SRR4302537.4092186/94‑1 (MQ=60)

                                    ACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGG                                                           <  SRR4302537.4123205/94‑1 (MQ=60)

                                    ACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGG                                                           <  SRR4302537.4328284/94‑1 (MQ=60)

                                     CCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGT                                                          <  SRR4302537.861302/94‑1 (MQ=60)

                                     CCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGT                                                          >  SRR4302537.1063206/1‑94 (MQ=60)

                                       ACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTAT                                                        >  SRR4302537.6426476/1‑94 (MQ=60)

                                         CAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTT                                                      >  SRR4302537.4657119/1‑94 (MQ=60)

                                           GCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGGAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTAC                                                    >  SRR4302537.2564099/1‑94 (MQ=60)

                                            CGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACT                                                   <  SRR4302537.3508893/94‑1 (MQ=60)

                                            CGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACT                                                   <  SRR4302537.1071687/94‑1 (MQ=60)

                                            CGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACT                                                   <  SRR4302537.5765442/94‑1 (MQ=60)

                                            CGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACT                                                   <  SRR4302537.538648/94‑1 (MQ=60)

                                             GCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTG                                                  <  SRR4302537.2290686/94‑1 (MQ=60)

                                             GCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTG                                                  <  SRR4302537.175912/94‑1 (MQ=60)

                                             GCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTG                                                  <  SRR4302537.4373509/94‑1 (MQ=60)

                                             GCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGAAGACACCAGAATGGTATTTACTG                                                  <  SRR4302537.1228400/94‑1 (MQ=60)

                                              CCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGG                                                 <  SRR4302537.2760433/94‑1 (MQ=60)

                                              CCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAAAATGGTATTTACTGG                                                 >  SRR4302537.783135/1‑94 (MQ=60)

                                               CATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGT                                                <  SRR4302537.3881717/94‑1 (MQ=60)

                                               CATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGT                                                <  SRR4302537.6419734/94‑1 (MQ=60)

                                               CATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGT                                                >  SRR4302537.2866665/1‑94 (MQ=60)

                                                ATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTA                                               >  SRR4302537.1924214/1‑94 (MQ=60)

                                                ATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTA                                               >  SRR4302537.5595791/1‑94 (MQ=60)

                                                 TTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTAC                                              <  SRR4302537.4831599/94‑1 (MQ=60)

                                                   AACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACAC                                            >  SRR4302537.4431321/1‑94 (MQ=60)

                                                    ACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACC                                           >  SRR4302537.1976052/1‑94 (MQ=60)

                                                     CAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCA                                          >  SRR4302537.6192056/1‑94 (MQ=60)

                                                      AGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCAC                                         <  SRR4302537.1971250/94‑1 (MQ=60)

                                                      AGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCAC                                         <  SRR4302537.5572705/94‑1 (MQ=60)

                                                      AGTCCGAAAGCGGACTCTGGAGCAAGTTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCAC                                         <  SRR4302537.2358734/94‑1 (MQ=60)

                                                       GTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACG                                        <  SRR4302537.1647311/94‑1 (MQ=60)

                                                        TCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGT                                       <  SRR4302537.6360369/94‑1 (MQ=60)

                                                         CCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAGCGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTT                                      >  SRR4302537.3490097/1‑94 (MQ=60)

                                                         CCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTT                                      <  SRR4302537.4873163/94‑1 (MQ=60)

                                                          CGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTT                                     <  SRR4302537.6218905/94‑1 (MQ=60)

                                                          CGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTT                                     >  SRR4302537.2929979/1‑94 (MQ=60)

                                                          CGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTT                                     >  SRR4302537.2238727/1‑94 (MQ=60)

                                                           GAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTA                                    >  SRR4302537.6464312/1‑94 (MQ=60)

                                                           GAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTA                                    >  SRR4302537.4910838/1‑94 (MQ=60)

                                                            AAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTAT                                   <  SRR4302537.4475044/94‑1 (MQ=60)

                                                             AAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATC                                  <  SRR4302537.5726456/94‑1 (MQ=60)

                                                             AAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATC                                  >  SRR4302537.47395/1‑94 (MQ=60)

                                                             AAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATC                                  <  SRR4302537.2004225/94‑1 (MQ=60)

                                                             AAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATC                                  <  SRR4302537.3815050/94‑1 (MQ=60)

                                                             AAGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATC                                  <  SRR4302537.2366773/94‑1 (MQ=60)

                                                              AGCGGACTCTGGGGCAAGGTAGTTAATCAGTGCACACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCG                                 <  SRR4302537.1762639/94‑1 (MQ=60)

                                                               GCGGACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGA                                <  SRR4302537.4575957/94‑1 (MQ=60)

                                                                  GACTCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAG                             <  SRR4302537.1767654/94‑1 (MQ=60)

                                                                  GACTCTGGGGCAAGGAAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAG                             <  SRR4302537.1024375/94‑1 (MQ=60)

                                                                     TCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACG                          <  SRR4302537.2022826/94‑1 (MQ=60)

                                                                     TCTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACG                          <  SRR4302537.4162769/94‑1 (MQ=60)

                                                                      CTGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGC                         <  SRR4302537.5154662/94‑1 (MQ=60)

                                                                       TGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCC                        >  SRR4302537.1321381/1‑94 (MQ=60)

                                                                       TGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCC                        >  SRR4302537.1937791/1‑94 (MQ=60)

                                                                       TGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCC                        >  SRR4302537.4947010/1‑94 (MQ=60)

                                                                       TGGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCC                        <  SRR4302537.722092/94‑1 (MQ=60)

                                                                        GGGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCA                       >  SRR4302537.6321377/1‑94 (MQ=60)

                                                                        GGGGCAAGGTAGTCAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCA                       >  SRR4302537.6321380/1‑94 (MQ=60)

                                                                         GGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAG                      >  SRR4302537.2254497/1‑94 (MQ=60)

                                                                         GGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAG                      <  SRR4302537.967154/94‑1 (MQ=60)

                                                                         GGGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAG                      >  SRR4302537.3002018/1‑94 (MQ=60)

                                                                          GGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGC                     <  SRR4302537.550194/94‑1 (MQ=60)

                                                                          GGCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGC                     >  SRR4302537.2674031/1‑94 (MQ=60)

                                                                           GCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCG                    <  SRR4302537.1932579/94‑1 (MQ=60)

                                                                           GCAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCG                    >  SRR4302537.3205957/1‑94 (MQ=60)

                                                                            CAAGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGC                   >  SRR4302537.4023800/1‑94 (MQ=60)

                                                                              AGGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTT                 >  SRR4302537.304717/1‑94 (MQ=60)

                                                                               GGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTT                >  SRR4302537.3177425/1‑94 (MQ=60)

                                                                               GGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTT                <  SRR4302537.1732762/94‑1 (MQ=60)

                                                                               GGTAGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTT                >  SRR4302537.5450425/1‑94 (MQ=60)

                                                                                  AGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGG             >  SRR4302537.5932585/1‑94 (MQ=60)

                                                                                  AGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGG             <  SRR4302537.3663307/94‑1 (MQ=60)

                                                                                  AGTTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGAACACCACGTTTATCGACAGACGCCAGCGCTTTTGT             >  SRR4302537.2109997/1‑94 (MQ=60)

                                                                                    TTAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCG           >  SRR4302537.4243310/1‑94 (MQ=60)

                                                                                     TAATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGC          <  SRR4302537.6490281/94‑1 (MQ=60)

                                                                                       ATCAGTGCGCACGACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCAT        >  SRR4302537.6313472/1‑94 (MQ=60)

                                                                                       ATCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCAT        >  SRR4302537.4294237/1‑94 (MQ=60)

                                                                                        TCAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATT       >  SRR4302537.5990373/1‑94 (MQ=60)

                                                                                         CAGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTA      >  SRR4302537.3951267/1‑94 (MQ=60)

                                                                                          AGTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTAC     <  SRR4302537.464305/94‑1 (MQ=60)

                                                                                           GTGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACC    >  SRR4302537.1294565/1‑94 (MQ=60)

                                                                                            TGCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACCC   <  SRR4302537.5475532/94‑1 (MQ=60)

                                                                                             GCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACCCT  <  SRR4302537.5718701/94‑1 (MQ=60)

                                                                                             GCGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACCCT  <  SRR4302537.563139/94‑1 (MQ=60)

AGGCTAATCATCGCCCAGTTGATTACCAGTGCAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCAGACACCAGAATGGTATTTACTGGTACACCACGTTTATCGACAGACGCCAGCGCTTTTGGCGCATTACCCT  >  NC_000913/120416‑120602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`