Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
188,442 |
T→C |
Q70R (CAG→CGG) |
glnD ← |
protein PII |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 188,442 | 0 | T | C | 100.0%
| 747.9
/ NA
| 213 | Q70R (CAG→CGG) | glnD | protein PII |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (106/107); total (106/107) |
Only 100 of 217 total aligned reads displayed.
AGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCTGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCG > NC_000913/188352‑188531
|
aGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATGCCGCTTCAATCCATAATCGTTGCAGGAGCCgg > 2:4306852/1‑93 (MQ=255)
aGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCgg < 2:2191460/93‑1 (MQ=255)
gCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGt > 2:3657552/1‑93 (MQ=255)
gCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGt > 2:73233/1‑93 (MQ=255)
cTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTc < 2:5722283/93‑1 (MQ=255)
tCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCg > 1:5588108/1‑93 (MQ=255)
gCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGAt > 1:1746099/1‑93 (MQ=255)
cccACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGAt < 2:3730949/92‑1 (MQ=255)
ccACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATa < 2:1230149/93‑1 (MQ=255)
ccGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATaaa < 2:1850115/92‑1 (MQ=255)
aCGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATaaa > 1:2681150/1‑93 (MQ=255)
aCGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATaaa < 2:5141888/93‑1 (MQ=255)
cGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAAc < 1:1598253/93‑1 (MQ=255)
cGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAAc < 2:833316/93‑1 (MQ=255)
gACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACt < 2:1340947/93‑1 (MQ=255)
gACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACt < 1:2580006/93‑1 (MQ=255)
aCCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACtg > 1:1304736/1‑92 (MQ=255)
aCCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTc > 1:4776603/1‑93 (MQ=255)
ccGTAGCCACCGCCGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCg < 2:4251635/93‑1 (MQ=255)
ccGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCg < 2:3890449/93‑1 (MQ=255)
ccGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCg < 1:373534/93‑1 (MQ=255)
gTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGt > 2:1449778/1‑93 (MQ=255)
gTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGt < 2:5011327/93‑1 (MQ=255)
tAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTg < 1:246255/93‑1 (MQ=255)
aGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgc < 2:3523818/93‑1 (MQ=255)
aGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgc < 2:4402703/93‑1 (MQ=255)
gCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgcg < 1:2523874/93‑1 (MQ=255)
gCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgcg > 1:571090/1‑93 (MQ=255)
ccACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgcgc < 1:657798/93‑1 (MQ=255)
ccACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgcgc < 1:3602671/93‑1 (MQ=255)
cACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTgcgcg < 1:5035700/93‑1 (MQ=255)
ccGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGcc < 2:2750683/93‑1 (MQ=255)
cGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCt > 2:6328112/1‑93 (MQ=255)
gACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCtc < 1:1025275/93‑1 (MQ=255)
aCGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCtca > 2:4555947/1‑93 (MQ=255)
gCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCtcaatc > 2:1311285/1‑93 (MQ=255)
gACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCtcaatcaa > 2:5504370/1‑93 (MQ=255)
gccAAGGCCAGGTGGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAAc < 2:4539980/92‑1 (MQ=255)
aCCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAAc < 2:2272545/93‑1 (MQ=255)
aCCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAAc < 1:6441309/93‑1 (MQ=255)
ccAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACt > 1:6356404/1‑93 (MQ=255)
ccAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACt < 2:4445045/93‑1 (MQ=255)
cAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTg > 2:4148872/1‑93 (MQ=255)
aaTGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGt > 2:591570/1‑93 (MQ=255)
gCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCt < 1:64686/93‑1 (MQ=255)
gCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCt > 2:4109114/1‑93 (MQ=255)
cAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGc < 2:462138/93‑1 (MQ=255)
aGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCa > 1:3725700/1‑93 (MQ=255)
ggTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCag > 1:4385387/1‑93 (MQ=255)
gTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCaga < 1:306916/93‑1 (MQ=255)
tCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTTCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCagag > 1:3844566/1‑93 (MQ=255)
tCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCagag > 1:3812140/1‑93 (MQ=255)
tCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCagag < 1:1136117/93‑1 (MQ=255)
gggCAAACTGAATGAATCCCGCTTCAATCCATAACCGTAGCAGGAGCCAGTGGATAACCTCGGTGCGCGCCTCAATCAACTGTTCTGCAgaga < 2:3934789/92‑1 (MQ=255)
cGGCAATCTGTCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAgaga < 2:1013285/93‑1 (MQ=255)
cGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAgaga > 1:3450307/1‑93 (MQ=255)
ggCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGAt > 1:2369366/1‑93 (MQ=255)
gCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATc < 1:3751539/93‑1 (MQ=255)
aaTCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATccc < 1:121328/93‑1 (MQ=255)
tCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCAt > 2:3388494/1‑93 (MQ=255)
tGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTg > 1:2436106/1‑93 (MQ=255)
ggCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGt < 1:1845669/93‑1 (MQ=255)
gCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTc < 2:3466018/93‑1 (MQ=255)
tGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCaa < 1:3574618/93‑1 (MQ=255)
aaTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAg < 1:4628028/93‑1 (MQ=255)
aaTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAg > 2:3006236/1‑93 (MQ=255)
aaTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAg > 2:3428504/1‑93 (MQ=255)
aTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGCTCCCATTGTCAAAgg > 1:4114232/1‑93 (MQ=255)
aTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAgg > 1:474499/1‑93 (MQ=255)
aTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAgg > 2:3404015/1‑93 (MQ=255)
aTCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAgc > 1:1452828/1‑92 (MQ=255)
tCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGc < 2:2817407/93‑1 (MQ=255)
cccGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCa < 1:4307725/93‑1 (MQ=255)
cGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATc > 2:5598230/1‑93 (MQ=255)
cGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATc < 1:1951186/93‑1 (MQ=255)
cGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATc > 1:4342288/1‑93 (MQ=255)
gCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCa < 2:4654915/93‑1 (MQ=255)
cTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAc > 1:4360845/1‑93 (MQ=255)
cTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAc > 1:2382288/1‑93 (MQ=255)
cTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATACCATTGTCAAAGGCATCAc > 2:2561914/1‑93 (MQ=255)
ttCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAcc < 1:3483521/93‑1 (MQ=255)
ttCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAcc > 1:5351623/1‑93 (MQ=255)
tCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAccc > 2:5292742/1‑93 (MQ=255)
caatcaatAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCa > 2:3159918/1‑93 (MQ=255)
aTCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGc > 1:18658/1‑93 (MQ=255)
aTCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGc > 1:6225369/1‑93 (MQ=255)
ccATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCa > 2:4694248/1‑93 (MQ=255)
aTAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAAc < 2:2331370/93‑1 (MQ=255)
aTAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAAc > 1:4254668/1‑93 (MQ=255)
tAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACg > 1:5208032/1‑93 (MQ=255)
aaTCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGc > 1:1778809/1‑93 (MQ=255)
tCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTg > 2:4578490/1‑93 (MQ=255)
tCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTg > 1:2819127/1‑93 (MQ=255)
cGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTgg > 2:5523940/1‑93 (MQ=255)
ttGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGaa < 2:251781/93‑1 (MQ=255)
gCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAg < 1:4703031/93‑1 (MQ=255)
cAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGt < 1:75424/93‑1 (MQ=255)
aGGAGCCGGTCGATAAGCTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTa < 1:5972564/93‑1 (MQ=255)
gAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATc < 2:368256/93‑1 (MQ=255)
aGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCg < 1:594305/93‑1 (MQ=255)
|
AGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCTGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCG > NC_000913/188352‑188531
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCTGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT > NC_000913/188349‑188535
|
TGCAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCC > SRR4302537.5668817/1‑94 (MQ=60)
GCAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCG < SRR4302537.5803483/94‑1 (MQ=60)
CAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGG > SRR4302537.1664855/1‑94 (MQ=60)
CAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGG > SRR4302537.3602707/1‑94 (MQ=60)
GCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTC > SRR4302537.4728405/1‑94 (MQ=60)
CTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCG > SRR4302537.5626319/1‑94 (MQ=60)
CGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGAT > SRR4302537.1758279/1‑94 (MQ=60)
GCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATA > SRR4302537.642335/1‑94 (MQ=60)
CACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAA > SRR4302537.2699870/1‑94 (MQ=60)
CACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAA > SRR4302537.2394268/1‑94 (MQ=60)
CGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACT < SRR4302537.1609420/94‑1 (MQ=60)
TACCGTAGCCACCGACGCCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCTGTCGATAAACTC < SRR4302537.257910/94‑1 (MQ=60)
GACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTG > SRR4302537.1313807/1‑94 (MQ=60)
GACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTC > SRR4302537.4809578/1‑94 (MQ=60)
GACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTC < SRR4302537.2598067/94‑1 (MQ=60)
GACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTC > SRR4302537.1793432/1‑94 (MQ=60)
CCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGG < SRR4302537.376121/94‑1 (MQ=60)
CGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGT < SRR4302537.3001819/94‑1 (MQ=60)
GTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTG > SRR4302537.1175539/1‑94 (MQ=60)
GTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTG < SRR4302537.3757801/94‑1 (MQ=60)
TAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGC < SRR4302537.247998/94‑1 (MQ=60)
AGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCG > SRR4302537.575012/1‑94 (MQ=60)
GCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGC < SRR4302537.2541594/94‑1 (MQ=60)
CCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCG < SRR4302537.3628061/94‑1 (MQ=60)
CCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCG < SRR4302537.662281/94‑1 (MQ=60)
CACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGC < SRR4302537.5070365/94‑1 (MQ=60)
GACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCA < SRR4302537.1032329/94‑1 (MQ=60)
CGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAAT > SRR4302537.5059131/1‑94 (MQ=60)
GGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATACATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATC < SRR4302537.2756603/94‑1 (MQ=60)
GACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAAC > SRR4302537.3382949/1‑94 (MQ=60)
ACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACT < SRR4302537.4274590/94‑1 (MQ=60)
ACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACT < SRR4302537.6485021/94‑1 (MQ=60)
ACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACT > SRR4302537.6399787/1‑94 (MQ=60)
CAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGT < SRR4302537.1748918/94‑1 (MQ=60)
AATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTT < SRR4302537.4336438/94‑1 (MQ=60)
AATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTT < SRR4302537.6284661/94‑1 (MQ=60)
GCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTG < SRR4302537.65164/94‑1 (MQ=60)
GCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGCAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTG < SRR4302537.3485489/94‑1 (MQ=60)
CAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCA > SRR4302537.3751878/1‑94 (MQ=60)
AGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAG > SRR4302537.4415649/1‑94 (MQ=60)
AGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAG < SRR4302537.5734900/94‑1 (MQ=60)
GTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTTCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAG > SRR4302537.3871487/1‑94 (MQ=60)
GTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTGTGCCGAG > SRR4302537.647720/1‑94 (MQ=60)
GTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAG < SRR4302537.309044/94‑1 (MQ=60)
GTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAG > SRR4302537.3838866/1‑94 (MQ=60)
TCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGA < SRR4302537.1144009/94‑1 (MQ=60)
TCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGA < SRR4302537.6046658/94‑1 (MQ=60)
TCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGA > SRR4302537.3474708/1‑94 (MQ=60)
CGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGAT > SRR4302537.2386065/1‑94 (MQ=60)
GGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATC > SRR4302537.1876938/1‑94 (MQ=60)
GCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCC < SRR4302537.3777887/94‑1 (MQ=60)
GCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCC < SRR4302537.261367/94‑1 (MQ=60)
AATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCA > SRR4302537.4281422/1‑94 (MQ=60)
AATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCA < SRR4302537.5625922/94‑1 (MQ=60)
AATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCA > SRR4302537.2438709/1‑94 (MQ=60)
AATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCA < SRR4302537.122198/94‑1 (MQ=60)
AATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCA > SRR4302537.5118429/1‑94 (MQ=60)
ATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCAT < SRR4302537.1449252/94‑1 (MQ=60)
TCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATT < SRR4302537.4374165/94‑1 (MQ=60)
CTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTG > SRR4302537.2453267/1‑94 (MQ=60)
GGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTC > SRR4302537.6005276/1‑94 (MQ=60)
GGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTC < SRR4302537.1858511/94‑1 (MQ=60)
GCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCA > SRR4302537.103543/1‑94 (MQ=60)
GCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCA > SRR4302537.1925844/1‑94 (MQ=60)
TGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAA < SRR4302537.3599828/94‑1 (MQ=60)
AATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGCTCCCATTGTCAAAGG > SRR4302537.4142972/1‑94 (MQ=60)
AATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGG > SRR4302537.477742/1‑94 (MQ=60)
AATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGG < SRR4302537.6498689/94‑1 (MQ=60)
AATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGG < SRR4302537.4660048/94‑1 (MQ=60)
AATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGC > SRR4302537.1462956/1‑94 (MQ=60)
ATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGC > SRR4302537.3870744/1‑94 (MQ=60)
ATCCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGC < SRR4302537.1545441/94‑1 (MQ=60)
CCCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCAT < SRR4302537.4337667/94‑1 (MQ=60)
CCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATC > SRR4302537.5813371/1‑94 (MQ=60)
CCGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATC > SRR4302537.4372405/1‑94 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCC > SRR4302537.3772225/1‑94 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCC > SRR4302537.4728003/1‑94 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCA < SRR4302537.1766038/94‑1 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCA < SRR4302537.1964755/94‑1 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCA > SRR4302537.687498/1‑94 (MQ=60)
CGCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCA < SRR4302537.1236701/94‑1 (MQ=60)
GCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAC > SRR4302537.4396292/1‑94 (MQ=60)
GCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAC > SRR4302537.2399076/1‑94 (MQ=60)
GCTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCAC > SRR4302537.4391019/1‑94 (MQ=60)
CTTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACC > SRR4302537.5388282/1‑94 (MQ=60)
TTCAATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCC < SRR4302537.3508163/94‑1 (MQ=60)
AATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGC > SRR4302537.18805/1‑94 (MQ=60)
AATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGC > SRR4302537.6268209/1‑94 (MQ=60)
ATCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCC > SRR4302537.3548907/1‑94 (MQ=60)
atCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCA < SRR4302537.4340146/92‑1 (MQ=60)
TCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCA < SRR4302537.3918118/94‑1 (MQ=60)
TCCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCA > SRR4302537.4527165/1‑94 (MQ=60)
CCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAA > SRR4302537.4784505/1‑94 (MQ=60)
CCATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAA < SRR4302537.2289324/94‑1 (MQ=60)
CATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAAC > SRR4302537.4284240/1‑94 (MQ=60)
ATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACG > SRR4302537.5243849/1‑94 (MQ=60)
ATAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACG > SRR4302537.4762078/1‑94 (MQ=60)
TAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGC > SRR4302537.1791205/1‑94 (MQ=60)
TAATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGC > SRR4302537.5250644/1‑94 (MQ=60)
AATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCT < SRR4302537.2537224/94‑1 (MQ=60)
ATCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTG > SRR4302537.2838838/1‑94 (MQ=60)
TCGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGG < SRR4302537.3637857/94‑1 (MQ=60)
CGTTGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGA < SRR4302537.2392375/94‑1 (MQ=60)
TGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAG < SRR4302537.3779223/94‑1 (MQ=60)
TGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAG > SRR4302537.6512978/1‑94 (MQ=60)
TGCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAG > SRR4302537.3732305/1‑94 (MQ=60)
GCAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGT < SRR4302537.4735569/94‑1 (MQ=60)
CAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTA > SRR4302537.5538949/1‑94 (MQ=60)
CAGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTA < SRR4302537.75980/94‑1 (MQ=60)
AGGAGCCGGTCGATAAGCTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTAT < SRR4302537.6013558/94‑1 (MQ=60)
AGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTAT < SRR4302537.2470343/94‑1 (MQ=60)
AGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTAT < SRR4302537.275341/94‑1 (MQ=60)
AGGAGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTAT < SRR4302537.875033/94‑1 (MQ=60)
AGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGA < SRR4302537.598369/94‑1 (MQ=60)
AGCCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGA > SRR4302537.5633911/1‑94 (MQ=60)
CCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATA < SRR4302537.1497341/94‑1 (MQ=60)
CCGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATA < SRR4302537.849007/94‑1 (MQ=60)
CGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT < SRR4302537.5225781/94‑1 (MQ=60)
CGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT < SRR4302537.496744/94‑1 (MQ=60)
CGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT < SRR4302537.4325625/94‑1 (MQ=60)
CGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT < SRR4302537.3904524/94‑1 (MQ=60)
CGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT < SRR4302537.807545/94‑1 (MQ=60)
|
TGCAGCTCGCCACGACCGTAGCCACCGACGGCGACCAATGCCAGGTCGGCAATCTGGCTGAATCCCGCTTCAATCCATAATCGTTGCAGGAGCTGGTCGATAAACTCGGTGCGCGCCTCAATCAACTGTTCTGCAGAGATCCCATTGTCAAAGGCATCACCCAGCCAACGCTGGAAAGTATCGATAT > NC_000913/188349‑188535
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
