Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
394,941 |
G→A |
L191L (CTG→TTG) |
yaiH ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 394,941 | 0 | G | A | 100.0%
| 854.5
/ NA
| 241 | L191L (CTG→TTG) | yaiH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (113/128); total (113/128) |
Only 100 of 255 total aligned reads displayed.
TGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGC > NC_000913/394851‑395030
|
tggtgTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCcaaca > 2:4941974/1‑93 (MQ=255)
ggtgTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCcaacag < 1:5046204/93‑1 (MQ=255)
gtgtCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAgg < 1:4030692/93‑1 (MQ=255)
tCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTNGCCAGTGCATCTGCCAACAGGTCg > 2:2551869/1‑93 (MQ=255)
tttCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGaa < 1:6289375/93‑1 (MQ=255)
tttCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGaa < 2:4409695/93‑1 (MQ=255)
tCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACg > 2:5509357/1‑93 (MQ=255)
ccccAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAg < 1:82112/93‑1 (MQ=255)
ccAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGt < 2:2445265/93‑1 (MQ=255)
cAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGtt > 1:3974797/1‑93 (MQ=255)
aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTa > 2:937978/1‑93 (MQ=255)
aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTa < 1:2685304/93‑1 (MQ=255)
aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTa < 2:4362914/93‑1 (MQ=255)
aaTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGAACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTa < 2:5714459/93‑1 (MQ=255)
aaTGGACGCGTTATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTa < 1:1646096/93‑1 (MQ=255)
aTGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTag > 2:3962220/1‑93 (MQ=255)
tGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTaga < 1:5246478/93‑1 (MQ=255)
ggACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCGAGTGCATCTGCCAACAGGTCGAACGCAAGGTTagag < 1:1236526/93‑1 (MQ=255)
ggACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTagag < 2:1938246/93‑1 (MQ=255)
gACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGt < 2:6210910/93‑1 (MQ=255)
aCGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTa < 2:4753622/93‑1 (MQ=255)
aCGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTa > 1:6073586/1‑93 (MQ=255)
gggTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTAcg > 1:1661365/1‑93 (MQ=255)
gggTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTAcg > 1:4919853/1‑93 (MQ=255)
ggTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTAcgc < 2:3878497/93‑1 (MQ=255)
gTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCACGGTTAGAGTAcgcc > 2:1245535/1‑93 (MQ=255)
aTCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACgccgcc < 2:5662419/93‑1 (MQ=255)
aTCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACgccgcc > 2:2777551/1‑93 (MQ=255)
aTCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACgccgcc < 2:104967/93‑1 (MQ=255)
aTCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACgccgcc < 1:2880362/93‑1 (MQ=255)
tCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCt < 1:3155187/93‑1 (MQ=255)
tCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCt < 1:6046759/93‑1 (MQ=255)
cTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTg > 1:4800310/1‑93 (MQ=255)
cTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTg > 2:3547225/1‑93 (MQ=255)
gCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGAc < 2:767361/93‑1 (MQ=255)
gCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGAc < 1:6339368/93‑1 (MQ=255)
gCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGAc < 1:3853431/93‑1 (MQ=255)
ctctTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACt > 2:5896216/1‑93 (MQ=255)
tctTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTg > 2:3370414/1‑93 (MQ=255)
ctTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGc > 1:4441345/1‑93 (MQ=255)
ttCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGcc < 1:3515386/93‑1 (MQ=255)
ttCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGcc < 2:6076760/93‑1 (MQ=255)
ttCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGcc > 1:3547948/1‑93 (MQ=255)
aacaacTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGgc < 1:4164660/93‑1 (MQ=255)
acaacTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGgcg > 1:620007/1‑93 (MQ=255)
acTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCgg > 2:4535222/1‑93 (MQ=255)
cTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGc < 2:6148638/93‑1 (MQ=255)
cTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGc < 2:215020/93‑1 (MQ=255)
tGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCt > 1:1832709/1‑93 (MQ=255)
ggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCttt > 2:3311820/1‑93 (MQ=255)
ggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCttt > 2:4623403/1‑93 (MQ=255)
ggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCttt < 2:1434939/93‑1 (MQ=255)
ggTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCttt < 1:1473583/93‑1 (MQ=255)
gTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTc > 1:6116169/1‑93 (MQ=255)
gTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTc > 2:5585253/1‑93 (MQ=255)
tataAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCa > 1:2398237/1‑93 (MQ=255)
tataAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCa > 1:1224604/1‑93 (MQ=255)
tataAGGCGTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCa < 2:1836910/93‑1 (MQ=255)
aGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGGCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCtt > 2:5262360/1‑93 (MQ=255)
ggCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTc < 2:5846612/93‑1 (MQ=255)
gCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTcc > 1:255594/1‑92 (MQ=255)
gCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCg > 2:1791394/1‑93 (MQ=255)
gCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCg > 1:2230088/1‑93 (MQ=255)
gCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCg > 2:5601665/1‑93 (MQ=255)
ttGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc > 1:3646142/1‑93 (MQ=255)
ttGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc > 2:3106734/1‑93 (MQ=255)
ttGCAGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc > 1:1003841/1‑93 (MQ=255)
gCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGt < 1:3665442/93‑1 (MQ=255)
ccGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCTCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTa < 2:5332157/93‑1 (MQ=255)
cGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAg < 1:4992117/93‑1 (MQ=255)
gACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGGCGTAGaa > 2:210111/1‑93 (MQ=255)
gACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGaa < 2:2305754/93‑1 (MQ=255)
gACGCATTCGCCAGGGCATCTTGCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGaa < 2:4242111/93‑1 (MQ=255)
cGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAg < 2:1299318/93‑1 (MQ=255)
gCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAgg > 1:2189265/1‑93 (MQ=255)
cATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGt > 1:2874644/1‑93 (MQ=255)
cATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGt < 1:324044/93‑1 (MQ=255)
cttCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTa < 2:2898935/92‑1 (MQ=255)
aTTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTa < 1:4854173/93‑1 (MQ=255)
aTTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTa > 1:1424972/1‑93 (MQ=255)
tCGCCAGTGCATCTGCCAACAGGTCGAACGCAGGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAtt < 1:1104126/93‑1 (MQ=255)
tCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAtt < 1:3302303/93‑1 (MQ=255)
gCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTc < 1:3868208/93‑1 (MQ=255)
ccAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTcc < 2:3052343/93‑1 (MQ=255)
ccAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTcc < 1:5660710/93‑1 (MQ=255)
cAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCa < 2:6473324/93‑1 (MQ=255)
aGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGCACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAg > 2:5233095/1‑93 (MQ=255)
gTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGc > 1:2747489/1‑93 (MQ=255)
gTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGc > 2:1606856/1‑93 (MQ=255)
tccATCTGCCAACAGGTCAAACGCAAGGTAAGAGTACGCCGCCTGACTGCCTGGCGCGGATTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCg < 2:4986060/91‑1 (MQ=255)
gCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGt < 1:1762315/93‑1 (MQ=255)
cATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGtt < 2:3781036/93‑1 (MQ=255)
cATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGtt < 1:656337/93‑1 (MQ=255)
aTCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTg > 1:5498915/1‑93 (MQ=255)
aTCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTg > 1:4614093/1‑93 (MQ=255)
tCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGc < 2:6399421/93‑1 (MQ=255)
cTGGCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCt < 1:4389803/93‑1 (MQ=255)
cTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCt > 1:208052/1‑93 (MQ=255)
tGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGATTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 2:811649/1‑93 (MQ=255)
ccAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGGTcgc > 2:1675786/1‑93 (MQ=255)
|
TGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGC > NC_000913/394851‑395030
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGC > NC_000913/394849‑395032
|
GGTGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAAC > SRR4302537.3752898/1‑94 (MQ=60)
GGTGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAAC > SRR4302537.5337543/1‑94 (MQ=60)
GTGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACA > SRR4302537.4201356/1‑94 (MQ=60)
TGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAG < SRR4302537.341054/94‑1 (MQ=60)
GGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGG < SRR4302537.5006897/94‑1 (MQ=60)
GGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGG < SRR4302537.5080956/94‑1 (MQ=60)
GTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGT < SRR4302537.4058901/94‑1 (MQ=60)
GTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCG < SRR4302537.1905373/94‑1 (MQ=60)
CTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAA > SRR4302537.621959/1‑94 (MQ=60)
CTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAA < SRR4302537.762737/94‑1 (MQ=60)
CTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAA > SRR4302537.2799236/1‑94 (MQ=60)
TTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAAC < SRR4302537.6332484/94‑1 (MQ=60)
TTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAAC > SRR4302537.1513342/1‑94 (MQ=60)
CATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCA > SRR4302537.145916/1‑94 (MQ=60)
TCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAG < SRR4302537.3890668/94‑1 (MQ=60)
ACCCCAATGGACGGGTAATCGTCTATTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAG < SRR4302537.3966281/94‑1 (MQ=60)
CCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGG < SRR4302537.82713/94‑1 (MQ=60)
CCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGG < SRR4302537.4788925/94‑1 (MQ=60)
CCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGT > SRR4302537.5309658/1‑94 (MQ=60)
CCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGT < SRR4302537.2711241/94‑1 (MQ=60)
CCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTT > SRR4302537.4002619/1‑94 (MQ=60)
AATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAG > SRR4302537.5723359/1‑94 (MQ=60)
AATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAG < SRR4302537.2704048/94‑1 (MQ=60)
AATGGACGCGTTATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAG < SRR4302537.1657628/94‑1 (MQ=60)
ATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGA < SRR4302537.3870693/94‑1 (MQ=60)
TGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAG < SRR4302537.5282579/94‑1 (MQ=60)
TGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAG < SRR4302537.1051101/94‑1 (MQ=60)
GGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCGAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGT < SRR4302537.1245129/94‑1 (MQ=60)
GGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCANTCGCCAGTGCATCTGCCANNNGGTCGAACGCAAGNNNNGNGT > SRR4302537.6119429/1‑94 (MQ=60)
GACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTA < SRR4302537.6380106/94‑1 (MQ=60)
GACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTA < SRR4302537.3421460/94‑1 (MQ=60)
GACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTA > SRR4302537.2633879/1‑94 (MQ=60)
GACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTA > SRR4302537.6115325/1‑94 (MQ=60)
ACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTAC < SRR4302537.3261306/94‑1 (MQ=60)
CGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACG > SRR4302537.1673008/1‑94 (MQ=60)
CGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACG < SRR4302537.6307186/94‑1 (MQ=60)
CGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACG < SRR4302537.6307185/94‑1 (MQ=60)
CGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACG < SRR4302537.4466655/94‑1 (MQ=60)
CGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACG > SRR4302537.4953790/1‑94 (MQ=60)
GGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGC < SRR4302537.89975/94‑1 (MQ=60)
GGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGC < SRR4302537.3690951/94‑1 (MQ=60)
AATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCC > SRR4302537.3616559/1‑94 (MQ=60)
ATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCT < SRR4302537.2900577/94‑1 (MQ=60)
TCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTG < SRR4302537.1663725/94‑1 (MQ=60)
TCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTG > SRR4302537.4833430/1‑94 (MQ=60)
TCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTG < SRR4302537.6088286/94‑1 (MQ=60)
TCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTG < SRR4302537.3177337/94‑1 (MQ=60)
TGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGAC < SRR4302537.550906/94‑1 (MQ=60)
GCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACTCCGCCTGACT > SRR4302537.4980141/1‑94 (MQ=60)
GCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACT < SRR4302537.3880410/94‑1 (MQ=60)
GCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACT < SRR4302537.6382688/94‑1 (MQ=60)
CTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTG > SRR4302537.2968191/1‑94 (MQ=60)
TCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGC > SRR4302537.4472019/1‑94 (MQ=60)
CTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCC < SRR4302537.4522136/94‑1 (MQ=60)
CTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCC > SRR4302537.3573014/1‑94 (MQ=60)
TTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCT < SRR4302537.3540254/94‑1 (MQ=60)
TCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTG > SRR4302537.3048033/1‑94 (MQ=60)
CAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGG < SRR4302537.2325587/94‑1 (MQ=60)
CAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGG > SRR4302537.1679413/1‑94 (MQ=60)
CAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGG > SRR4302537.1147092/1‑94 (MQ=60)
AACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCG < SRR4302537.4193747/94‑1 (MQ=60)
AACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCG > SRR4302537.624226/1‑94 (MQ=60)
AACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTACCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGG > SRR4302537.5246009/1‑94 (MQ=60)
ACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGC > SRR4302537.6103412/1‑94 (MQ=60)
CTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCT > SRR4302537.1845472/1‑94 (MQ=60)
CTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCT < SRR4302537.1717762/94‑1 (MQ=60)
GGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTC < SRR4302537.1483824/94‑1 (MQ=60)
GGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTC > SRR4302537.2120513/1‑94 (MQ=60)
GGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTC > SRR4302537.6158199/1‑94 (MQ=60)
GTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCA > SRR4302537.4952561/1‑94 (MQ=60)
GTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCA < SRR4302537.2897199/94‑1 (MQ=60)
GTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCA > SRR4302537.1233113/1‑94 (MQ=60)
GTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCA < SRR4302537.4238425/94‑1 (MQ=60)
GTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCA > SRR4302537.2415127/1‑94 (MQ=60)
TATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAG < SRR4302537.6152026/94‑1 (MQ=60)
ATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGC > SRR4302537.2241853/1‑94 (MQ=60)
AAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTT < SRR4302537.1233342/94‑1 (MQ=60)
AAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTT < SRR4302537.5665687/94‑1 (MQ=60)
AAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTT < SRR4302537.6149061/94‑1 (MQ=60)
AGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTC < SRR4302537.3925199/94‑1 (MQ=60)
AGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTC < SRR4302537.4525157/94‑1 (MQ=60)
AGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTC < SRR4302537.17788/94‑1 (MQ=60)
GGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCG > SRR4302537.2245817/1‑94 (MQ=60)
GGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCG > SRR4302537.3565398/1‑94 (MQ=60)
GGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCG < SRR4302537.1305684/94‑1 (MQ=60)
GGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCC > SRR4302537.257405/1‑94 (MQ=60)
CTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCC > SRR4302537.403822/1‑94 (MQ=60)
CTTGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCC > SRR4302537.3671809/1‑94 (MQ=60)
CTTGCAGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCC > SRR4302537.1010772/1‑94 (MQ=60)
TGCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGT < SRR4302537.2842387/94‑1 (MQ=60)
GCCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTA < SRR4302537.3691243/94‑1 (MQ=60)
CCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAG < SRR4302537.359586/94‑1 (MQ=60)
CCGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAG < SRR4302537.22923/94‑1 (MQ=60)
CGGACGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGA < SRR4302537.5026518/94‑1 (MQ=60)
CGCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGG > SRR4302537.2204686/1‑94 (MQ=60)
GCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCCAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGT > SRR4302537.220233/1‑94 (MQ=60)
GCATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGT > SRR4302537.2894819/1‑94 (MQ=60)
CATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGat > SRR4302537.1200528/1‑92 (MQ=60)
CATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTA > SRR4302537.1434894/1‑94 (MQ=60)
CATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTA < SRR4302537.326291/94‑1 (MQ=60)
CATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTA > SRR4302537.4119540/1‑94 (MQ=60)
CATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGGA > SRR4302537.2007322/1‑94 (MQ=60)
ATTCGCCCGCGCATCTGCCAACGGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGTCGTTCAGCTTCGCCGTAGAAAGGTAT < SRR4302537.2840460/94‑1 (MQ=60)
ATTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAT < SRR4302537.4887664/94‑1 (MQ=60)
TTCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATT < SRR4302537.6473586/94‑1 (MQ=60)
TCGCCAGTGCATCTGCCAACAGGTCGAACGCAGGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTT < SRR4302537.1111749/94‑1 (MQ=60)
TCGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTT < SRR4302537.3325651/94‑1 (MQ=60)
CGCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTC > SRR4302537.5894010/1‑94 (MQ=60)
GCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCC > SRR4302537.1624607/1‑94 (MQ=60)
GCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCC < SRR4302537.3895278/94‑1 (MQ=60)
GCCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCC > SRR4302537.4082163/1‑94 (MQ=60)
CCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCA < SRR4302537.5699448/94‑1 (MQ=60)
CCAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCA < SRR4302537.3178249/94‑1 (MQ=60)
CAGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAG < SRR4302537.1434815/94‑1 (MQ=60)
AGTGCGTCTGCGAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGC < SRR4302537.2474476/94‑1 (MQ=60)
AGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGC > SRR4302537.4852059/1‑94 (MQ=60)
AGTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGC > SRR4302537.2766653/1‑94 (MQ=60)
GTGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCG > SRR4302537.4881178/1‑94 (MQ=60)
TGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGT < SRR4302537.2606874/94‑1 (MQ=60)
TGCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGT > SRR4302537.5163769/1‑94 (MQ=60)
GCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTT < SRR4302537.5048164/94‑1 (MQ=60)
GCATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTT < SRR4302537.1774592/94‑1 (MQ=60)
CATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTG > SRR4302537.4646045/1‑94 (MQ=60)
CATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTG > SRR4302537.5536464/1‑94 (MQ=60)
CATCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTG < SRR4302537.660812/94‑1 (MQ=60)
TCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCT > SRR4302537.209548/1‑94 (MQ=60)
TCTGCCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCT < SRR4302537.3872735/94‑1 (MQ=60)
CTGGCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTC < SRR4302537.4420074/94‑1 (MQ=60)
CCNANANGTCGAACGCAAGGTTNGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCG < SRR4302537.2639024/94‑1 (MQ=60)
CCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCG < SRR4302537.3293738/94‑1 (MQ=60)
CCAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCG < SRR4302537.6515479/94‑1 (MQ=60)
CAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGC < SRR4302537.3885793/94‑1 (MQ=60)
CAACAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGCATTTCCAGCGTTGCTCGCGC > SRR4302537.5554026/1‑94 (MQ=60)
|
GGTGGTGTCTTTCATCCCCAATGGACGGGTAATCTGCTCTTCAAACAACTGGGTATAAGGCTTGCCGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGC > NC_000913/394849‑395032
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
