Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
462,112 |
A→G |
D325G (GAC→GGC) |
ybaU → |
putative protease maturation protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 462,112 | 0 | A | G | 96.1%
| 823.5
/ 9.9
| 256 | D325G (GAC→GGC) | ybaU | putative protease maturation protein |
| Reads supporting (aligned to +/- strand): ref base A (6/4); new base G (120/126); total (126/130) |
| Fisher's exact test for biased strand distribution p-value = 5.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 266 total aligned reads displayed.
TTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGA > NC_000913/462022‑462202
|
gctgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCgca > 1:2132575/1‑91 (MQ=255)
gctgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGaa > 2:1005420/1‑93 (MQ=255)
ctgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAAc < 2:1481894/93‑1 (MQ=255)
tgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACt > 2:854775/1‑93 (MQ=255)
gcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTg > 1:4831267/1‑93 (MQ=255)
gcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTg > 1:3865674/1‑93 (MQ=255)
gcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTg < 1:2456652/93‑1 (MQ=255)
cATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGa < 2:1732589/93‑1 (MQ=255)
cATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGa < 1:3343820/93‑1 (MQ=255)
aTTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCCGGCGGACTGaa > 2:4884168/1‑93 (MQ=255)
ttAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGaaa > 2:2153225/1‑93 (MQ=255)
tAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGaaaa > 1:2625470/1‑93 (MQ=255)
aGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGaaaaa < 1:6049579/93‑1 (MQ=255)
gCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAAt < 2:2732954/93‑1 (MQ=255)
cAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGc > 1:711273/1‑93 (MQ=255)
cAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGc < 2:4772620/93‑1 (MQ=255)
cAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGGTAGAAGATGACACCATCCCGGGCGAACTGCAAAATGc > 1:4403114/1‑93 (MQ=255)
aaaGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCt > 1:140521/1‑93 (MQ=255)
aaaGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCt < 1:989774/93‑1 (MQ=255)
aaaGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCt > 1:5875762/1‑93 (MQ=255)
aaGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTg > 1:2738264/1‑93 (MQ=255)
gAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGt > 2:3154850/1‑93 (MQ=255)
gAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGt > 2:5472128/1‑93 (MQ=255)
aaaaaTCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTc < 1:409820/93‑1 (MQ=255)
aaaTCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTg < 1:4011825/93‑1 (MQ=255)
aaTCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTga < 1:2931385/93‑1 (MQ=255)
aTCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaa > 2:394457/1‑93 (MQ=255)
tCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaa < 2:1117872/93‑1 (MQ=255)
tCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaa < 1:164715/93‑1 (MQ=255)
tCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaa < 2:3432990/93‑1 (MQ=255)
tCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaa > 1:4723855/1‑93 (MQ=255)
cTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaag > 1:4352465/1‑93 (MQ=255)
cTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaag < 1:4617767/93‑1 (MQ=255)
gCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaagaa < 2:2258768/93‑1 (MQ=255)
ccGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaagaaa < 2:5039461/93‑1 (MQ=255)
ccGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaagaaa > 1:3903660/1‑93 (MQ=255)
ccGATATTATCTCCGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTgaaagaaa > 2:4485573/1‑93 (MQ=255)
atatTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAg > 2:2342877/1‑93 (MQ=255)
tattatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAgg > 1:1167318/1‑93 (MQ=255)
ttatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGcc > 2:3296833/1‑93 (MQ=255)
tatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCa > 2:2853552/1‑93 (MQ=255)
tatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCa > 2:3139680/1‑93 (MQ=255)
atCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCaa < 1:1392596/93‑1 (MQ=255)
tctcTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAAc < 1:5439137/93‑1 (MQ=255)
tctcTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAAc < 1:4233808/93‑1 (MQ=255)
ctctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACt < 1:5394272/93‑1 (MQ=255)
ctctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACt < 1:2173258/93‑1 (MQ=255)
ctctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACt > 2:5819405/1‑93 (MQ=255)
tctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGGCTGAAAGAAAAAGGGCAACTg > 2:787518/1‑93 (MQ=255)
ctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGt < 1:2092242/93‑1 (MQ=255)
ctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGt > 1:4364216/1‑93 (MQ=255)
tGCTCGTAACGGTGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTc < 2:5544146/93‑1 (MQ=255)
tGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTc < 1:5365168/93‑1 (MQ=255)
cTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTg < 2:4104320/93‑1 (MQ=255)
tCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTgg > 1:3639598/1‑93 (MQ=255)
cGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGgt > 2:4997926/1‑93 (MQ=255)
tAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGgtgt < 1:3077686/93‑1 (MQ=255)
tAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGgtgt > 1:5320409/1‑93 (MQ=255)
tAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGACAACTGTCTGgtgt > 2:3801920/1‑93 (MQ=255)
cggcggCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGtcat < 1:6190428/93‑1 (MQ=255)
gcggcgATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGtcatca > 1:1046112/1‑93 (MQ=255)
cggcgATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCaa > 1:4053450/1‑93 (MQ=255)
ggcgATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCaaa < 2:1186741/93‑1 (MQ=255)
ggcgATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCaaa < 2:115016/93‑1 (MQ=255)
gcgATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAAt < 2:4387353/93‑1 (MQ=255)
gATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCt > 2:4934828/1‑93 (MQ=255)
atatGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCtt < 2:636835/93‑1 (MQ=255)
atatGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCtt > 2:5240240/1‑93 (MQ=255)
atGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcg > 2:5852158/1‑93 (MQ=255)
tGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcgg < 2:2610582/93‑1 (MQ=255)
tGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcgg > 1:1832361/1‑93 (MQ=255)
tGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcgg < 1:1262720/93‑1 (MQ=255)
tGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcgg < 2:4593032/93‑1 (MQ=255)
gggTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcggt < 2:1587280/93‑1 (MQ=255)
gttggttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcggtcg > 1:3540594/1‑93 (MQ=255)
gttggttAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcggtcg > 1:1721490/1‑93 (MQ=255)
ttggttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTtcggtcgg > 2:6262870/1‑93 (MQ=255)
tggttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTcggtcggt < 2:5714171/93‑1 (MQ=255)
tggttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTcggtcggt < 1:4277521/93‑1 (MQ=255)
ggttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGtt < 2:6091648/93‑1 (MQ=255)
ggttAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGtt < 1:4885953/93‑1 (MQ=255)
ttAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTc > 1:5079385/1‑93 (MQ=255)
tAGAAGATGCCACTATCCCGGGCGAACTGAAAAAGGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAACCTTCGGTCGGTTTcc < 2:5972641/93‑1 (MQ=255)
agaagaTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCt > 1:2528487/1‑93 (MQ=255)
agaTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGAt > 2:3622677/1‑93 (MQ=255)
agaTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGAt < 1:1016447/93‑1 (MQ=255)
gaTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGAtt < 1:4930798/93‑1 (MQ=255)
aTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTg < 1:6386062/93‑1 (MQ=255)
aTGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTg < 2:4717079/93‑1 (MQ=255)
tGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGt < 2:696689/93‑1 (MQ=255)
gCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTa < 2:5083342/93‑1 (MQ=255)
gCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTa < 1:5962105/93‑1 (MQ=255)
ccACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTAc > 2:4882004/1‑93 (MQ=255)
cACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACg < 1:924875/93‑1 (MQ=255)
cACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACg < 1:2007008/93‑1 (MQ=255)
cACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACg > 1:5673105/1‑93 (MQ=255)
aCTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGt > 1:2358181/1‑93 (MQ=255)
tATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCt < 2:3034575/93‑1 (MQ=255)
aTCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTg > 2:3837663/1‑93 (MQ=255)
ccGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgac < 1:6302772/93‑1 (MQ=255)
|
TTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGA > NC_000913/462022‑462202
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACAT > NC_000913/462019‑462205
|
ATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGG < SRR4302537.2793575/94‑1 (MQ=60)
TTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGC < SRR4302537.2764036/94‑1 (MQ=60)
TTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGA < SRR4302537.2505941/94‑1 (MQ=60)
TGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTG > SRR4302537.4864632/1‑94 (MQ=60)
TGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTG > SRR4302537.3892729/1‑94 (MQ=60)
TGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTG < SRR4302537.6309220/94‑1 (MQ=60)
TGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTG < SRR4302537.305060/94‑1 (MQ=60)
GCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGA < SRR4302537.2473930/94‑1 (MQ=60)
CATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAA < SRR4302537.3367490/94‑1 (MQ=60)
ATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAA > SRR4302537.2634666/1‑94 (MQ=60)
TTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAA > SRR4302537.2643865/1‑94 (MQ=60)
AGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAAT < SRR4302537.4601441/94‑1 (MQ=60)
AGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAAT < SRR4302537.6091125/94‑1 (MQ=60)
GCCAAAGAAAAATCTGCCTATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATG > SRR4302537.5857823/1‑94 (MQ=60)
GCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCCCTATCCCGGGCGAACTGAAAAATG < SRR4302537.4244705/94‑1 (MQ=60)
GCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATG < SRR4302537.1158486/94‑1 (MQ=60)
GCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATG < SRR4302537.2384870/94‑1 (MQ=60)
CCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGC > SRR4302537.716143/1‑94 (MQ=60)
CCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGC > SRR4302537.4881210/1‑94 (MQ=60)
CCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGGTAGAAGATGACACCATCCCGGGCGAACTGCAAAATGC > SRR4302537.4433499/1‑94 (MQ=60)
CAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCT > SRR4302537.5916074/1‑94 (MQ=60)
CAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCT > SRR4302537.141520/1‑94 (MQ=60)
AAAGAAAACTCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTG < SRR4302537.3898642/94‑1 (MQ=60)
AAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTG < SRR4302537.996614/94‑1 (MQ=60)
AAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTG > SRR4302537.2757375/1‑94 (MQ=60)
AAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGG > SRR4302537.4387367/1‑94 (MQ=60)
AGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGT > SRR4302537.2661407/1‑94 (MQ=60)
AGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGT < SRR4302537.5938821/94‑1 (MQ=60)
GAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTC > SRR4302537.4079895/1‑94 (MQ=60)
GAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTC > SRR4302537.171488/1‑94 (MQ=60)
AAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCT < SRR4302537.6053139/94‑1 (MQ=60)
AAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCT < SRR4302537.2147671/94‑1 (MQ=60)
AAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCT < SRR4302537.412657/94‑1 (MQ=60)
AAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTG < SRR4302537.3382375/94‑1 (MQ=60)
AAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGA < SRR4302537.4039918/94‑1 (MQ=60)
AATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAA < SRR4302537.2951968/94‑1 (MQ=60)
ATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAA > SRR4302537.5483993/1‑94 (MQ=60)
ATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAA > SRR4302537.4756510/1‑94 (MQ=60)
TCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAG < SRR4302537.165885/94‑1 (MQ=60)
TCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAG > SRR4302537.4382610/1‑94 (MQ=60)
TCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAG < SRR4302537.4657284/94‑1 (MQ=60)
TCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAG < SRR4302537.1753406/94‑1 (MQ=60)
CTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGA < SRR4302537.4649749/94‑1 (MQ=60)
TGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAA > SRR4302537.497587/1‑94 (MQ=60)
TGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAA > SRR4302537.1005444/1‑94 (MQ=60)
TGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAA < SRR4302537.2122590/94‑1 (MQ=60)
GCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAA > SRR4302537.3930950/1‑94 (MQ=60)
GCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGAAGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAA > SRR4302537.4807917/1‑94 (MQ=60)
CGATATTATCTCTGCTCGTAACGGCGGCGCTATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAA > SRR4302537.2523524/1‑94 (MQ=60)
CGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAA > SRR4302537.565773/1‑94 (MQ=60)
CGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAA > SRR4302537.170315/1‑94 (MQ=60)
GATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAG > SRR4302537.3644544/1‑94 (MQ=60)
ATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGG < SRR4302537.5854716/94‑1 (MQ=60)
ATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGG > SRR4302537.1175435/1‑94 (MQ=60)
ATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGGGAACTGAAAAATGCTGGCCTGAAAGAAAAAGGCA > SRR4302537.1393554/1‑94 (MQ=60)
ATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCC > SRR4302537.2403267/1‑94 (MQ=60)
ATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCC < SRR4302537.3750277/94‑1 (MQ=60)
TTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCA > SRR4302537.6148874/1‑94 (MQ=60)
TTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCA < SRR4302537.2731502/94‑1 (MQ=60)
TTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCA > SRR4302537.211927/1‑94 (MQ=60)
ATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAAC < SRR4302537.1402305/94‑1 (MQ=60)
TCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACT < SRR4302537.4263272/94‑1 (MQ=60)
TCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACT < SRR4302537.5476241/94‑1 (MQ=60)
CTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTG < SRR4302537.5431110/94‑1 (MQ=60)
CTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTG < SRR4302537.2188580/94‑1 (MQ=60)
CTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTG < SRR4302537.360584/94‑1 (MQ=60)
TCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGT > SRR4302537.4394398/1‑94 (MQ=60)
TCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGT > SRR4302537.2822814/1‑94 (MQ=60)
CTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTC < SRR4302537.2106997/94‑1 (MQ=60)
CTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTC < SRR4302537.4817234/94‑1 (MQ=60)
TGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCT < SRR4302537.1795828/94‑1 (MQ=60)
TGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCT < SRR4302537.5401884/94‑1 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG < SRR4302537.4415872/94‑1 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG < SRR4302537.4032609/94‑1 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG < SRR4302537.3126901/94‑1 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG > SRR4302537.1867472/1‑94 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG > SRR4302537.3665230/1‑94 (MQ=60)
CTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGG > SRR4302537.3082092/1‑94 (MQ=60)
GTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGT > SRR4302537.5356927/1‑94 (MQ=60)
TAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTC < SRR4302537.3099123/94‑1 (MQ=60)
ACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCAT < SRR4302537.4422674/94‑1 (MQ=60)
CGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATC < SRR4302537.6233073/94‑1 (MQ=60)
GGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCA > SRR4302537.1053333/1‑94 (MQ=60)
GGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCA > SRR4302537.42926/1‑94 (MQ=60)
GCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAA > SRR4302537.4081791/1‑94 (MQ=60)
CGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAA < SRR4302537.1392644/94‑1 (MQ=60)
GGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAAT > SRR4302537.5147264/1‑94 (MQ=60)
GGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAAT < SRR4302537.5404796/94‑1 (MQ=60)
CGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCT > SRR4302537.5377907/1‑94 (MQ=60)
CGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCT < SRR4302537.4385652/94‑1 (MQ=60)
CGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCT < SRR4302537.4952262/94‑1 (MQ=60)
CGATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCT > SRR4302537.4314814/1‑94 (MQ=60)
GATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTT > SRR4302537.1166119/1‑94 (MQ=60)
GATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTT > SRR4302537.4192481/1‑94 (MQ=60)
ATATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTC < SRR4302537.2023767/94‑1 (MQ=60)
TATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCG < SRR4302537.3133783/94‑1 (MQ=60)
ATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGG > SRR4302537.1845121/1‑94 (MQ=60)
ATGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGG < SRR4302537.1522731/94‑1 (MQ=60)
TGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGT > SRR4302537.1046057/1‑94 (MQ=60)
TGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGT < SRR4302537.971033/94‑1 (MQ=60)
TGGGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGT < SRR4302537.1271502/94‑1 (MQ=60)
GGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCG < SRR4302537.2642067/94‑1 (MQ=60)
GGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCG > SRR4302537.6117816/1‑94 (MQ=60)
GGTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCG > SRR4302537.3565603/1‑94 (MQ=60)
GGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCG > SRR4302537.1733521/1‑94 (MQ=60)
GTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGG > SRR4302537.501378/1‑94 (MQ=60)
GTTGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGG > SRR4302537.5445473/1‑94 (MQ=60)
TGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTT < SRR4302537.969032/94‑1 (MQ=60)
TGGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTT < SRR4302537.4307248/94‑1 (MQ=60)
TGCTTAGATGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAATGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTT < SRR4302537.538295/94‑1 (MQ=60)
GGTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGACGGTTT > SRR4302537.6439464/1‑94 (MQ=60)
GGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTT < SRR4302537.4919693/94‑1 (MQ=60)
GTTAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTC > SRR4302537.5114351/1‑94 (MQ=60)
TAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCT < SRR4302537.5417761/94‑1 (MQ=60)
TAGAAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCT > SRR4302537.2546229/1‑94 (MQ=60)
AAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGAT < SRR4302537.1224808/94‑1 (MQ=60)
AAGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGAT < SRR4302537.2308470/94‑1 (MQ=60)
AGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAGCTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATT < SRR4302537.1405625/94‑1 (MQ=60)
AGATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATT < SRR4302537.1023446/94‑1 (MQ=60)
AGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATT < SRR4302537.4060988/94‑1 (MQ=60)
GATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTG < SRR4302537.4964785/94‑1 (MQ=60)
ATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGT < SRR4302537.6429586/94‑1 (MQ=60)
ATGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGT > SRR4302537.4110819/1‑94 (MQ=60)
TGCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTA > SRR4302537.4028753/1‑94 (MQ=60)
GCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTAC > SRR4302537.1412988/1‑94 (MQ=60)
GCCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTAC < SRR4302537.6003027/94‑1 (MQ=60)
CCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACG > SRR4302537.906222/1‑94 (MQ=60)
CCACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACG > SRR4302537.5711922/1‑94 (MQ=60)
CACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGT < SRR4302537.2020995/94‑1 (MQ=60)
CACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGT < SRR4302537.931254/94‑1 (MQ=60)
CACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGT > SRR4302537.2374815/1‑94 (MQ=60)
ACTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTC > SRR4302537.2335295/1‑94 (MQ=60)
CTATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGCTTGTACGTCT > SRR4302537.6506636/1‑94 (MQ=60)
TATCCCGGGCGAACTGAAAAATGCTGTTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTG < SRR4302537.602340/94‑1 (MQ=60)
ATCCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGG < SRR4302537.4942586/94‑1 (MQ=60)
CCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGAC < SRR4302537.6427197/94‑1 (MQ=60)
CCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGAC < SRR4302537.2089188/94‑1 (MQ=60)
CCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGAC > SRR4302537.4280177/1‑94 (MQ=60)
CCCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGAC > SRR4302537.6405924/1‑94 (MQ=60)
CCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACG < SRR4302537.6345936/94‑1 (MQ=60)
CCGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTAGACG > SRR4302537.4691058/1‑94 (MQ=60)
CGGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGA > SRR4302537.2076771/1‑94 (MQ=60)
CGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGA > SRR4302537.3865938/1‑94 (MQ=60)
GGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGAC > SRR4302537.6435297/1‑94 (MQ=60)
GGGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGAC > SRR4302537.2270940/1‑94 (MQ=60)
GGCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACA < SRR4302537.3299792/94‑1 (MQ=60)
GCGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACAT < SRR4302537.5373325/94‑1 (MQ=60)
|
ATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACAT > NC_000913/462019‑462205
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
