Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	477,397	T→C	T151A (ACG→GCG)	ylaB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	477,397	0	T	C	96.4%	886.6 / 14.3	275	T151A (ACG→GCG)	ylaB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (3/7); new base C (140/125); total (143/132)
Fisher's exact test for biased strand distribution p-value = 2.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 280 total aligned reads displayed.

TTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGC  >  NC_000913/477306‑477485

  gCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTcc                                                                                       <  2:3916700/93‑1 (MQ=255)

   ccAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTccc                                                                                      >  2:1731121/1‑93 (MQ=255)

   ccAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTccc                                                                                      >  2:3812234/1‑93 (MQ=255)

    cAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCa                                                                                     >  2:4440889/1‑93 (MQ=255)

    cAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCa                                                                                     <  2:855264/93‑1 (MQ=255)

    cAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCa                                                                                     <  1:5019255/93‑1 (MQ=255)

     aataatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAt                                                                                    >  1:2206190/1‑93 (MQ=255)

     aataatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAt                                                                                    >  1:4770341/1‑93 (MQ=255)

      ataatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATg                                                                                   >  1:4019161/1‑93 (MQ=255)

       taatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATgg                                                                                  >  1:5626379/1‑93 (MQ=255)

       taatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATgg                                                                                  <  1:2054908/93‑1 (MQ=255)

        aatGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGc                                                                                 <  1:2329904/93‑1 (MQ=255)

          tGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGa                                                                               >  2:2278769/1‑93 (MQ=255)

               gcATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATg                                                                          <  1:6022414/93‑1 (MQ=255)

               gcATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATg                                                                          >  2:4503272/1‑93 (MQ=255)

                cATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGt                                                                         >  2:2448032/1‑93 (MQ=255)

                 aTCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTa                                                                        <  1:4227554/93‑1 (MQ=255)

                  tCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTaa                                                                       >  1:6276952/1‑93 (MQ=255)

                  tCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTaa                                                                       >  1:5380076/1‑93 (MQ=255)

                  tCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTaa                                                                       >  1:4300072/1‑93 (MQ=255)

                  tCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTaa                                                                       >  2:5284689/1‑93 (MQ=255)

                  tCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTaa                                                                       >  2:5871683/1‑93 (MQ=255)

                   cAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAAc                                                                      <  2:6372570/93‑1 (MQ=255)

                   cAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAAc                                                                      <  1:941428/93‑1 (MQ=255)

                    aaTTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACg                                                                     <  1:2623937/93‑1 (MQ=255)

                    aaTTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACg                                                                     <  2:3008183/93‑1 (MQ=255)

                         gCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATaa                                                                <  1:2415532/93‑1 (MQ=255)

                          ccACGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACAATGTAACGGATAAt                                                               >  1:3293796/1‑93 (MQ=255)

                           cATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAAtc                                                              >  2:4685252/1‑92 (MQ=255)

                           cATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATg                                                              >  1:1565427/1‑93 (MQ=255)

                           cATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATg                                                              >  2:5631841/1‑93 (MQ=255)

                             tGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGcc                                                            <  1:4547492/93‑1 (MQ=255)

                             tGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGcc                                                            <  2:1201137/93‑1 (MQ=255)

                             tGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGcc                                                            <  2:2654437/93‑1 (MQ=255)

                              gAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCt                                                           >  2:947207/1‑93 (MQ=255)

                                gCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTaa                                                         <  2:1091873/93‑1 (MQ=255)

                                gCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGCATAATGCCTaa                                                         >  1:4576512/1‑93 (MQ=255)

                                 cTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTaaa                                                        >  1:1748080/1‑93 (MQ=255)

                                  tataGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAAt                                                       <  2:5223261/93‑1 (MQ=255)

                                   ataGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATc                                                      <  1:5283132/93‑1 (MQ=255)

                                   ataGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATc                                                      <  1:1156612/93‑1 (MQ=255)

                                   ataGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATc                                                      <  2:5403202/93‑1 (MQ=255)

                                    taGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCg                                                     >  2:2078487/1‑93 (MQ=255)

                                    taGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCg                                                     >  1:2753866/1‑93 (MQ=255)

                                       ggAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTa                                                  <  1:5895665/93‑1 (MQ=255)

                                         aaTGACATCAATGAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATg                                                <  2:3634220/93‑1 (MQ=255)

                                         aaTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATg                                                >  1:2304058/1‑93 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               <  2:2797073/93‑1 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               >  1:4940088/1‑93 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               <  2:48317/93‑1 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               <  1:2811095/93‑1 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               >  2:6262841/1‑93 (MQ=255)

                                          aTGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGc                                               >  2:628662/1‑93 (MQ=255)

                                           tGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCg                                              >  1:1999405/1‑93 (MQ=255)

                                               aTCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGt                                          <  1:1397079/93‑1 (MQ=255)

                                               aTCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGt                                          >  1:4368806/1‑93 (MQ=255)

                                                tCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGtt                                         >  1:2837527/1‑93 (MQ=255)

                                                  aaTAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTaa                                       <  1:4191865/93‑1 (MQ=255)

                                                  aaTAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGATATGCGATGTTaa                                       >  1:6113981/1‑93 (MQ=255)

                                                   aTAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAAc                                      <  1:2869083/93‑1 (MQ=255)

                                                   aTAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAAc                                      <  1:4498372/93‑1 (MQ=255)

                                                   aTAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAAc                                      <  2:2669274/93‑1 (MQ=255)

                                                    tAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTCAcc                                     >  1:6237560/1‑93 (MQ=255)

                                                       aGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGa                                  <  1:3424879/93‑1 (MQ=255)

                                                       aGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGa                                  <  2:147392/93‑1 (MQ=255)

                                                          aaGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGacac                               <  2:3557032/93‑1 (MQ=255)

                                                           aGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGGTAATGCCTAAATCGTTATGCGATGTTAACCAGACACg                              <  1:6473585/93‑1 (MQ=255)

                                                           aGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACg                              >  1:5470134/1‑93 (MQ=255)

                                                           aGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACg                              <  2:5043530/93‑1 (MQ=255)

                                                            gCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGa                             <  2:685332/93‑1 (MQ=255)

                                                             cGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGAt                            >  1:3800462/1‑93 (MQ=255)

                                                              ggggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATa                           >  2:6014314/1‑93 (MQ=255)

                                                              ggggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATa                           <  2:1537410/93‑1 (MQ=255)

                                                              ggggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATa                           <  1:5743275/93‑1 (MQ=255)

                                                              cgggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATa                           <  1:3098871/92‑1 (MQ=255)

                                                               gggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATaa                          >  2:1899083/1‑93 (MQ=255)

                                                                ggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAAc                         <  2:1636980/93‑1 (MQ=255)

                                                                ggTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAAc                         <  1:5810534/93‑1 (MQ=255)

                                                                  tCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCa                       >  1:720696/1‑93 (MQ=255)

                                                                  tCGATCATGACCACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGTCTAAATCGTTATGCGATGTTAAACAGACACGATAACCa                       >  2:4327546/1‑93 (MQ=255)

                                                                  gcGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAAGGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCa                       <  2:325819/92‑1 (MQ=255)

                                                                    gATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATc                     >  1:1830594/1‑93 (MQ=255)

                                                                     aTCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCt                    >  2:5507258/1‑93 (MQ=255)

                                                                     aTCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCt                    <  2:4077311/93‑1 (MQ=255)

                                                                      tCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCtt                   >  1:6132547/1‑93 (MQ=255)

                                                                        aTGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTc                 >  1:5781460/1‑93 (MQ=255)

                                                                        aTGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTc                 >  1:1027840/1‑93 (MQ=255)

                                                                           acgacATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGaa              >  1:3683724/1‑93 (MQ=255)

                                                                             gacATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAAt            >  1:3868532/1‑93 (MQ=255)

                                                                             gacATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAAt            >  2:3766150/1‑93 (MQ=255)

                                                                              acATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAAtt           <  1:565077/93‑1 (MQ=255)

                                                                                 tAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTa        >  2:2546574/1‑93 (MQ=255)

                                                                                 tAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTa        <  1:1056961/93‑1 (MQ=255)

                                                                                 tAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTa        <  2:2221094/93‑1 (MQ=255)

                                                                                 tAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTa        <  2:2902069/93‑1 (MQ=255)

                                                                                  aaTGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAc       <  1:6384226/93‑1 (MQ=255)

                                                                                   aTGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAcc      <  2:3354350/93‑1 (MQ=255)

                                                                                   aTGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAcc      >  2:3193427/1‑93 (MQ=255)

                                                                                     gtgCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTg    <  2:5781460/93‑1 (MQ=255)

                                                                                       gCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGc  >  2:5333666/1‑93 (MQ=255)

TTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGC  >  NC_000913/477306‑477485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGGG  >  NC_000913/477304‑477490

CATTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGC                                                                                               <  SRR4302537.2636111/94‑1 (MQ=60)

CATTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGC                                                                                               <  SRR4302537.3792254/94‑1 (MQ=60)

CATTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGC                                                                                               >  SRR4302537.1585901/1‑94 (MQ=60)

    GCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCC                                                                                           >  SRR4302537.1975220/1‑94 (MQ=60)

     CCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCA                                                                                          >  SRR4302537.3968588/1‑94 (MQ=60)

     CCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCA                                                                                          >  SRR4302537.5843635/1‑94 (MQ=60)

     CCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCA                                                                                          >  SRR4302537.5669259/1‑94 (MQ=60)

      CAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAT                                                                                         <  SRR4302537.5053827/94‑1 (MQ=60)

      CAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAT                                                                                         >  SRR4302537.4803278/1‑94 (MQ=60)

      CAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAT                                                                                         <  SRR4302537.2325109/94‑1 (MQ=60)

      CAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCAT                                                                                         >  SRR4302537.2221746/1‑94 (MQ=60)

       AATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATG                                                                                        >  SRR4302537.6401704/1‑94 (MQ=60)

       AATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATG                                                                                        >  SRR4302537.5422600/1‑94 (MQ=60)

       AATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATG                                                                                        >  SRR4302537.4047300/1‑94 (MQ=60)

       AATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATG                                                                                        >  SRR4302537.1534371/1‑94 (MQ=60)

       AATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATG                                                                                        <  SRR4302537.5920307/94‑1 (MQ=60)

        ATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGG                                                                                       >  SRR4302537.5664855/1‑94 (MQ=60)

        ATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGG                                                                                       <  SRR4302537.2697475/94‑1 (MQ=60)

        ATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGG                                                                                       >  SRR4302537.6159005/1‑94 (MQ=60)

         TAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGC                                                                                      <  SRR4302537.5842337/94‑1 (MQ=60)

         TAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGC                                                                                      <  SRR4302537.2069325/94‑1 (MQ=60)

         TAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGC                                                                                      >  SRR4302537.491906/1‑94 (MQ=60)

          AATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCG                                                                                     <  SRR4302537.2346335/94‑1 (MQ=60)

          AATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCG                                                                                     >  SRR4302537.2623604/1‑94 (MQ=60)

          AATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCG                                                                                     <  SRR4302537.5664720/94‑1 (MQ=60)

              GCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCA                                                                                 >  SRR4302537.5319945/1‑94 (MQ=60)

               CGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCAT                                                                                <  SRR4302537.1253755/94‑1 (MQ=60)

               CGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGCCCAT                                                                                >  SRR4302537.602343/1‑94 (MQ=60)

               CGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCAT                                                                                <  SRR4302537.4239546/94‑1 (MQ=60)

               CGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCAT                                                                                >  SRR4302537.6061902/1‑94 (MQ=60)

                 GCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGT                                                                              <  SRR4302537.6063791/94‑1 (MQ=60)

                  CATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTA                                                                             <  SRR4302537.1242166/94‑1 (MQ=60)

                   ATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAA                                                                            >  SRR4302537.4329956/1‑94 (MQ=60)

                   ATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAA                                                                            <  SRR4302537.4256989/94‑1 (MQ=60)

                   ATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAA                                                                            >  SRR4302537.5416868/1‑94 (MQ=60)

                   ATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAA                                                                            >  SRR4302537.6320016/1‑94 (MQ=60)

                    TCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAAC                                                                           <  SRR4302537.5787337/94‑1 (MQ=60)

                     CAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACG                                                                          >  SRR4302537.5111368/1‑94 (MQ=60)

                     CAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACG                                                                          <  SRR4302537.3973537/94‑1 (MQ=60)

                     CAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACG                                                                          <  SRR4302537.947921/94‑1 (MQ=60)

                      AATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGG                                                                         <  SRR4302537.2642327/94‑1 (MQ=60)

                       ATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATTACGACAGAATGTGCCGCTGCCATGGCCACCATGTAACGGA                                                                        >  SRR4302537.1863954/1‑94 (MQ=60)

                       ATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGA                                                                        <  SRR4302537.3013739/94‑1 (MQ=60)

                        TTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGAT                                                                       >  SRR4302537.4376844/1‑94 (MQ=60)

                           GCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAAT                                                                    <  SRR4302537.2432531/94‑1 (MQ=60)

                           GCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAAT                                                                    >  SRR4302537.629690/1‑94 (MQ=60)

                           GCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAAT                                                                    <  SRR4302537.918754/94‑1 (MQ=60)

                           GCCACGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACAATGTAACGGATAAT                                                                    >  SRR4302537.3317076/1‑94 (MQ=60)

                            CCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATG                                                                   >  SRR4302537.1576350/1‑94 (MQ=60)

                             CATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGC                                                                  >  SRR4302537.2185959/1‑94 (MQ=60)

                             CATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGC                                                                  >  SRR4302537.5670405/1‑94 (MQ=60)

                               TGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCT                                                                <  SRR4302537.4448207/94‑1 (MQ=60)

                               TGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCT                                                                <  SRR4302537.4578964/94‑1 (MQ=60)

                                GAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTA                                                               <  SRR4302537.4576849/94‑1 (MQ=60)

                                 AGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAA                                                              >  SRR4302537.1114768/1‑94 (MQ=60)

                                 AGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGCATAATGCCTAA                                                              >  SRR4302537.4608184/1‑94 (MQ=60)

                                  GCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAA                                                             >  SRR4302537.1760274/1‑94 (MQ=60)

                                   CTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAAT                                                            >  SRR4302537.2398442/1‑94 (MQ=60)

                                   CTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAAT                                                            <  SRR4302537.734842/94‑1 (MQ=60)

                                   CAATAGGGAATGAAATAATTAAGGGAAGCGGGTTAGATCATGACAACAGAATGTGCCG‑CCCCATGGCGCCCATGTAACGGATAATGCCTAAATC                                                           <  SRR4302537.5967794/94‑1 (MQ=24)

                                    TATAGGGAATGACATCAATAAAGGCAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATC                                                           >  SRR4302537.3626859/1‑94 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          <  SRR4302537.5319465/94‑1 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          <  SRR4302537.6243370/94‑1 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          <  SRR4302537.1164658/94‑1 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          <  SRR4302537.2866927/94‑1 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          >  SRR4302537.4861126/1‑94 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          >  SRR4302537.1638697/1‑94 (MQ=60)

                                     ATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCG                                                          >  SRR4302537.2773089/1‑94 (MQ=60)

                                       AGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTT                                                        >  SRR4302537.4605246/1‑94 (MQ=60)

                                        GGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTA                                                       <  SRR4302537.4133192/94‑1 (MQ=60)

                                        GGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTA                                                       <  SRR4302537.421449/94‑1 (MQ=60)

                                         GGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTAT                                                      >  SRR4302537.5738851/1‑94 (MQ=60)

                                         GGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTAT                                                      <  SRR4302537.5936116/94‑1 (MQ=60)

                                          GAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATG                                                     >  SRR4302537.6115947/1‑94 (MQ=60)

                                          GAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATG                                                     >  SRR4302537.2320320/1‑94 (MQ=60)

                                           AATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGC                                                    >  SRR4302537.1072311/1‑94 (MQ=60)

                                           AATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGC                                                    >  SRR4302537.4974158/1‑94 (MQ=60)

                                            ATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCG                                                   >  SRR4302537.2013308/1‑94 (MQ=60)

                                            ATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCG                                                   <  SRR4302537.5040278/94‑1 (MQ=60)

                                            ATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCG                                                   <  SRR4302537.2830751/94‑1 (MQ=60)

                                              GACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGAT                                                 >  SRR4302537.284548/1‑94 (MQ=60)

                                              GACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGAT                                                 >  SRR4302537.1661175/1‑94 (MQ=60)

                                                CATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGT                                               >  SRR4302537.4399000/1‑94 (MQ=60)

                                                 ATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTT                                              >  SRR4302537.2857380/1‑94 (MQ=60)

                                                 ATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTT                                              <  SRR4302537.1406818/94‑1 (MQ=60)

                                                 ATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTT                                              >  SRR4302537.3770010/1‑94 (MQ=60)

                                                  TCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTA                                             <  SRR4302537.6449042/94‑1 (MQ=60)

                                                   CAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAA                                            >  SRR4302537.6305377/1‑94 (MQ=60)

                                                   CAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAA                                            >  SRR4302537.3868361/1‑94 (MQ=60)

                                                   CAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGATATGCGATGTTAA                                            >  SRR4302537.6155995/1‑94 (MQ=60)

                                                    AATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAAC                                           >  SRR4302537.2236745/1‑94 (MQ=60)

                                                    AATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAAC                                           <  SRR4302537.4221145/94‑1 (MQ=60)

                                                     ATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTCACC                                          >  SRR4302537.6280449/1‑94 (MQ=60)

                                                     ATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACC                                          <  SRR4302537.4529486/94‑1 (MQ=60)

                                                     ATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACC                                          <  SRR4302537.2889221/94‑1 (MQ=60)

                                                      TAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCA                                         >  SRR4302537.68106/1‑94 (MQ=60)

                                                      TAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCA                                         <  SRR4302537.5318607/94‑1 (MQ=60)

                                                        AAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCCTGGCGACCATGTAACGGATAATGCCTAAATCGATATGCGATGTTAACCAGA                                       >  SRR4302537.1285075/1‑94 (MQ=60)

                                                        AAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGC                                       >  SRR4302537.3283044/1‑94 (MQ=60)

                                                         AGGAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGAC                                      <  SRR4302537.3449123/94‑1 (MQ=60)

                                                           GAAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACAC                                    <  SRR4302537.1985422/94‑1 (MQ=60)

                                                            AAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACG                                   <  SRR4302537.2879956/94‑1 (MQ=60)

                                                            AAGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACG                                   >  SRR4302537.5507445/1‑94 (MQ=60)

                                                             AGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGGTAATGCCTAAATCGTTATGCGATGTTAACCAGACACGA                                  <  SRR4302537.6517512/94‑1 (MQ=60)

                                                             AGCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGA                                  >  SRR4302537.4635987/1‑94 (MQ=60)

                                                              GCGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGAT                                 >  SRR4302537.3827127/1‑94 (MQ=60)

                                                               CGGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATA                                <  SRR4302537.4334322/94‑1 (MQ=60)

                                                                GGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               <  SRR4302537.5010681/94‑1 (MQ=60)

                                                                GGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               >  SRR4302537.469764/1‑94 (MQ=60)

                                                                GGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               <  SRR4302537.5782598/94‑1 (MQ=60)

                                                                GGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               >  SRR4302537.4268822/1‑94 (MQ=60)

                                                                GGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               >  SRR4302537.6094550/1‑94 (MQ=60)

                                                                CGGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAA                               <  SRR4302537.3120498/94‑1 (MQ=60)

                                                                 GGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAAC                              <  SRR4302537.45641/94‑1 (MQ=60)

                                                                 GGGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAAC                              <  SRR4302537.2656772/94‑1 (MQ=60)

                                                                  GGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACC                             <  SRR4302537.5850371/94‑1 (MQ=60)

                                                                  GGTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACC                             <  SRR4302537.2782659/94‑1 (MQ=60)

                                                                   GTCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCA                            >  SRR4302537.725618/1‑94 (MQ=60)

                                                                    TCGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCAT                           <  SRR4302537.2958199/94‑1 (MQ=60)

                                                                     gaATCATGACGACATATTGGGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATC                          <  SRR4302537.5712870/92‑1 (MQ=60)

                                                                     CGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATC                          >  SRR4302537.3808109/1‑94 (MQ=60)

                                                                     CGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATC                          <  SRR4302537.3399952/94‑1 (MQ=60)

                                                                     CGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATC                          <  SRR4302537.6231000/94‑1 (MQ=60)

                                                                     CGATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATC                          >  SRR4302537.1843343/1‑94 (MQ=60)

                                                                      GATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCT                         >  SRR4302537.3880451/1‑94 (MQ=60)

                                                                      GATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCT                         >  SRR4302537.3266279/1‑94 (MQ=60)

                                                                       ATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTT                        <  SRR4302537.2033736/94‑1 (MQ=60)

                                                                       ATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTT                        >  SRR4302537.6174703/1‑94 (MQ=60)

                                                                       ATCATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTT                        >  SRR4302537.1802200/1‑94 (MQ=60)

                                                                         CATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTC                      >  SRR4302537.1034916/1‑94 (MQ=60)

                                                                         CATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTC                      >  SRR4302537.5821086/1‑94 (MQ=60)

                                                                         CATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTC                      >  SRR4302537.4290565/1‑94 (MQ=60)

                                                                          ATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCG                     >  SRR4302537.3409429/1‑94 (MQ=60)

                                                                          ATGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCG                     <  SRR4302537.6430022/94‑1 (MQ=60)

                                                                           TGACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGA                    <  SRR4302537.2495295/94‑1 (MQ=60)

                                                                            GACGACATAATGTGCCGCTCCCATGGCGGCCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAA                   <  SRR4302537.2027202/94‑1 (MQ=60)

                                                                            GACGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAA                   >  SRR4302537.3709628/1‑94 (MQ=60)

                                                                             ACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAA                  <  SRR4302537.5927356/94‑1 (MQ=60)

                                                                              CGACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAAT                 >  SRR4302537.3895605/1‑94 (MQ=60)

                                                                               GACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATT                >  SRR4302537.5584081/1‑94 (MQ=60)

                                                                               GACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATT                >  SRR4302537.2186032/1‑94 (MQ=60)

                                                                                ACATAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTT               <  SRR4302537.568961/94‑1 (MQ=60)

                                                                                   TAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAC            <  SRR4302537.6423092/94‑1 (MQ=60)

                                                                                   TAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAC            >  SRR4302537.2783387/1‑94 (MQ=60)

                                                                                   TAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAC            <  SRR4302537.1064252/94‑1 (MQ=60)

                                                                                   TAATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTAC            <  SRR4302537.154271/94‑1 (MQ=60)

                                                                                    AATGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACC           <  SRR4302537.6427740/94‑1 (MQ=60)

                                                                                      TGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTG         <  SRR4302537.1055751/94‑1 (MQ=60)

                                                                                      TGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTG         <  SRR4302537.5419411/94‑1 (MQ=60)

                                                                                      TGTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTG         <  SRR4302537.2229426/94‑1 (MQ=60)

                                                                                       GTGCCGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGG        <  SRR4302537.4430242/94‑1 (MQ=60)

                                                                                         GCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCT      <  SRR4302537.2352950/94‑1 (MQ=60)

                                                                                           CGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCG    >  SRR4302537.4391256/1‑94 (MQ=60)

                                                                                           CGCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCG    >  SRR4302537.815355/1‑94 (MQ=60)

                                                                                           CGCTCCCATGGCGACCATGTAACGGATAATGCATAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCG    >  SRR4302537.4412620/1‑94 (MQ=60)

                                                                                            GCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGG   >  SRR4302537.1184551/1‑94 (MQ=60)

                                                                                            GCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGG   >  SRR4302537.6010856/1‑94 (MQ=60)

                                                                                            GCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGG   <  SRR4302537.1834105/94‑1 (MQ=60)

                                                                                            GCTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGG   <  SRR4302537.1125864/94‑1 (MQ=60)

                                                                                             CTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGGG  >  SRR4302537.1357280/1‑94 (MQ=60)

                                                                                             CTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGGG  >  SRR4302537.4600235/1‑94 (MQ=60)

CATTGCCAATAATGGCGGCATCAATTTGCCATGAGCTATAGGGAATGACATCAATAAAGGAAGCGGGGTCGATCATGACGACATAATGTGCCGTTCCCATGGCGACCATGTAACGGATAATGCCTAAATCGTTATGCGATGTTAACCAGACACGATAACCATCTTTCGAAATTTTACCTGGCTCGGG  >  NC_000913/477304‑477490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`