Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
484,839 |
T→G |
N2T (AAC→ACC) |
acrA ← |
acridine efflux pump |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 484,839 | 0 | T | G | 100.0%
| 879.8
/ NA
| 248 | N2T (AAC→ACC) | acrA | acridine efflux pump |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (133/115); total (133/115) |
Only 100 of 250 total aligned reads displayed.
TGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCT > NC_000913/484749‑484928
|
tgttgGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTc < 1:1781569/93‑1 (MQ=255)
ttgGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCat < 1:3855124/93‑1 (MQ=255)
tgGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCata < 2:6351302/93‑1 (MQ=255)
gggCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCatat < 2:5106163/93‑1 (MQ=255)
gggCCTGTTTGTCGTCACAGCCTGTTAGCGCTAAGCGGGCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAGCCCTCTGTTTTTGGTCatgt < 2:4169752/93‑3 (MQ=255)
ggCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATg < 1:5974783/93‑1 (MQ=255)
gCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGt < 2:3732191/93‑1 (MQ=255)
gCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGt < 2:4895794/93‑1 (MQ=255)
gCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGt < 2:2719786/93‑1 (MQ=255)
ccTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTa < 1:3267439/93‑1 (MQ=255)
cTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTaa > 2:2005448/1‑93 (MQ=255)
tGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTaaa > 1:3017212/1‑93 (MQ=255)
tGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTaaa > 2:1294429/1‑93 (MQ=255)
tGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTaaa < 2:5920098/93‑1 (MQ=255)
tttGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAAcc > 2:5096518/1‑93 (MQ=255)
tcgtcACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGa < 1:4430869/93‑1 (MQ=255)
cgtcACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAg < 2:3853257/93‑1 (MQ=255)
tcACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAgtg > 1:5680930/1‑93 (MQ=255)
cacaTCCTGTTAGGGCTAAGCTGCCTGAGAGAATCAGAAAGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAgtgc > 1:977266/1‑92 (MQ=255)
acaTCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTc > 2:5045991/1‑93 (MQ=255)
acaTCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTc > 1:4017458/1‑93 (MQ=255)
caTCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTcc > 2:4021919/1‑93 (MQ=255)
aTCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCg > 2:3138820/1‑93 (MQ=255)
tCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGa < 1:6306667/93‑1 (MQ=255)
tCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGa > 2:1268795/1‑93 (MQ=255)
cTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGAtt < 2:1446847/93‑1 (MQ=255)
tGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGAttt > 1:1637181/1‑93 (MQ=255)
tGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGAttt > 1:923713/1‑93 (MQ=255)
tGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGAttt > 1:1260482/1‑93 (MQ=255)
gTTAGGGCTAAGCTGCCTGAGAGCCTCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTc > 2:5849210/1‑93 (MQ=255)
gTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTc > 1:2017455/1‑93 (MQ=255)
gTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTc > 2:1475612/1‑93 (MQ=255)
tAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCaa < 1:5407836/93‑1 (MQ=255)
aGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCaaa > 2:251531/1‑93 (MQ=255)
gggCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAAt < 2:2839095/93‑1 (MQ=255)
ggCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAAtt < 2:4457476/93‑1 (MQ=255)
gCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtg < 2:1678276/93‑1 (MQ=255)
cTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtgg < 2:2142008/93‑1 (MQ=255)
cTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtgg < 2:2265299/93‑1 (MQ=255)
cTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtgg < 2:4725207/93‑1 (MQ=255)
tAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggt < 2:2661857/93‑1 (MQ=255)
tAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggt < 2:3224503/93‑1 (MQ=255)
aGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtca > 2:883658/1‑93 (MQ=255)
gCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaa < 1:1557990/93‑1 (MQ=255)
gCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaa < 2:4656763/93‑1 (MQ=255)
cTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaat < 2:5442239/93‑1 (MQ=255)
cTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaat < 2:1090997/93‑1 (MQ=255)
tGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatg < 1:2680833/93‑1 (MQ=255)
gCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatgg > 2:4151990/1‑93 (MQ=255)
gCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatgg > 2:6220635/1‑93 (MQ=255)
ccTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatggt > 2:3570441/1‑93 (MQ=255)
ccTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatggt < 2:560282/93‑1 (MQ=255)
gagaGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatggtcaa > 2:4517761/1‑93 (MQ=255)
gagCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCaaaa > 1:4564967/1‑93 (MQ=255)
gagCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCaaaa < 2:686074/93‑1 (MQ=255)
agCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAg < 1:5861981/93‑1 (MQ=255)
agCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAg > 2:1789083/1‑93 (MQ=255)
gCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGt < 1:733211/93‑1 (MQ=255)
gCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGt < 1:4682760/93‑1 (MQ=255)
cATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGtt > 1:3578712/1‑93 (MQ=255)
aTCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTta > 1:2623421/1‑93 (MQ=255)
cGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAcc < 2:933687/93‑1 (MQ=255)
gACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAccc > 1:2318951/1‑93 (MQ=255)
caCCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAccc < 2:2571913/92‑1 (MQ=255)
gccGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCa < 1:1194043/92‑1 (MQ=255)
aCCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCa > 1:3906204/1‑93 (MQ=255)
aCCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCa < 1:4974511/93‑1 (MQ=255)
ccGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAt > 1:4813676/1‑93 (MQ=255)
ccGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAt > 2:3991192/1‑93 (MQ=255)
cGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAtt < 1:2275126/93‑1 (MQ=255)
ccAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATtgc > 1:2913803/1‑93 (MQ=255)
cAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATtgct > 1:1110358/1‑93 (MQ=255)
cAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACACATtgct > 2:1213363/1‑93 (MQ=255)
agagGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATtgctg > 2:286505/1‑93 (MQ=255)
gagGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATtgctgc < 1:2838544/93‑1 (MQ=255)
gagGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATtgctgc > 2:1124007/1‑93 (MQ=255)
ggCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGt > 2:1026301/1‑93 (MQ=255)
ggCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGt > 2:340664/1‑93 (MQ=255)
gCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGtt > 1:2532719/1‑93 (MQ=255)
gCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGtt < 1:5451163/93‑1 (MQ=255)
gCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGtt > 2:1869287/1‑93 (MQ=255)
gTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTta > 1:115557/1‑93 (MQ=255)
tAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTtat > 2:4527972/1‑93 (MQ=255)
aaaCCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTtata < 1:3328751/93‑1 (MQ=255)
aaCCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTatat < 1:4186190/93‑1 (MQ=255)
aaCCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTatat > 2:4323871/1‑93 (MQ=255)
aaCCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTatat > 1:5175766/1‑93 (MQ=255)
aCCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtatt > 2:5244229/1‑93 (MQ=255)
cccTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtatta > 1:2111049/1‑93 (MQ=255)
cccTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtatta > 2:2225012/1‑93 (MQ=255)
cccTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtatta < 1:1747410/93‑1 (MQ=255)
cccTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtatta < 1:6385896/93‑1 (MQ=255)
tctGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAtcg > 1:6166852/1‑93 (MQ=255)
ctGGTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAtcgt < 1:2072692/93‑1 (MQ=255)
tGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAtcgtc > 1:3693244/1‑93 (MQ=255)
tGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAtcgtc < 2:851544/93‑1 (MQ=255)
gTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAtcgtcg < 1:2996600/93‑1 (MQ=255)
tttttGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATcgtcgt > 2:5751789/1‑93 (MQ=255)
tttttGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATcgtcgt > 2:118350/1‑93 (MQ=255)
ttGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCt < 2:1522851/93‑1 (MQ=255)
|
TGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCT > NC_000913/484749‑484928
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGG > NC_000913/484746‑484932
|
CCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGG > SRR4302537.4074080/1‑94 (MQ=60)
CCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGG > SRR4302537.1886832/1‑94 (MQ=60)
CCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGG > SRR4302537.5991534/1‑94 (MQ=60)
CTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGT > SRR4302537.4551076/1‑94 (MQ=60)
CTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGT > SRR4302537.5258809/1‑94 (MQ=60)
TGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCA < SRR4302537.1793985/94‑1 (MQ=60)
TTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATA < SRR4302537.3882109/94‑1 (MQ=60)
TGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCTAGAGGCGTAAACCCTCTGTTTTTGGTCATAT > SRR4302537.1852489/1‑94 (MQ=60)
TGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATAT < SRR4302537.3989467/94‑1 (MQ=60)
TGGGCCTCTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATAT < SRR4302537.2618210/94‑1 (MQ=60)
GGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGT < SRR4302537.543716/94‑1 (MQ=60)
GGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGT < SRR4302537.2302947/94‑1 (MQ=60)
GGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGT < SRR4302537.6015800/94‑1 (MQ=60)
GCTTGTTTGTCGTCACCTCCTTTTAGGGCTAAGCTGCCTGAGAGCCTCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTA < SRR4302537.4698913/94‑1 (MQ=60)
CCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAA > SRR4302537.4564644/1‑94 (MQ=60)
CCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAA < SRR4302537.3290495/94‑1 (MQ=60)
CTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAA > SRR4302537.3038243/1‑94 (MQ=60)
TGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAAC < SRR4302537.1242456/94‑1 (MQ=60)
TTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCT > SRR4302537.4749259/1‑94 (MQ=60)
TGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCG > SRR4302537.5411879/1‑94 (MQ=60)
TGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCG > SRR4302537.2317851/1‑94 (MQ=60)
GTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGA > SRR4302537.4050586/1‑94 (MQ=60)
TCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAG < SRR4302537.4461468/94‑1 (MQ=60)
GTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTG > SRR4302537.5719788/1‑94 (MQ=60)
TCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGT > SRR4302537.1530591/1‑94 (MQ=60)
TCACATCCTGTTAGGGCTAAGCTGCCTGAGAGAATCAGAAAGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGC > SRR4302537.984009/1‑94 (MQ=60)
CACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTC > SRR4302537.4045585/1‑94 (MQ=60)
CATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCG < SRR4302537.910341/94‑1 (MQ=60)
TCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGAT < SRR4302537.6349854/94‑1 (MQ=60)
CTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTT > SRR4302537.1269250/1‑94 (MQ=60)
CTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTT > SRR4302537.930089/1‑94 (MQ=60)
CTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTT > SRR4302537.1648653/1‑94 (MQ=60)
TGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTC > SRR4302537.2031518/1‑94 (MQ=60)
TAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAA < SRR4302537.5444720/94‑1 (MQ=60)
AGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAAT < SRR4302537.5487061/94‑1 (MQ=60)
GGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTG < SRR4302537.3861363/94‑1 (MQ=60)
AAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCA < SRR4302537.3321138/94‑1 (MQ=60)
GCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAAT < SRR4302537.1568862/94‑1 (MQ=60)
TGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGT > SRR4302537.2664923/1‑94 (MQ=60)
TGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGG > SRR4302537.6262618/1‑94 (MQ=60)
TGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGG < SRR4302537.2699552/94‑1 (MQ=60)
GCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGT < SRR4302537.6149788/94‑1 (MQ=60)
GCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGT < SRR4302537.4853779/94‑1 (MQ=60)
GCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGT < SRR4302537.3665708/94‑1 (MQ=60)
CTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCA < SRR4302537.3856607/94‑1 (MQ=60)
CTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCA > SRR4302537.422784/1‑94 (MQ=60)
CTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCA > SRR4302537.2187538/1‑94 (MQ=60)
TGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAA > SRR4302537.1707724/1‑94 (MQ=60)
GAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAA > SRR4302537.2737505/1‑94 (MQ=60)
AGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAA > SRR4302537.4596565/1‑94 (MQ=60)
GAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAG < SRR4302537.2089158/94‑1 (MQ=60)
AGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGT < SRR4302537.5902180/94‑1 (MQ=60)
GCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTT < SRR4302537.4715154/94‑1 (MQ=60)
GCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTT > SRR4302537.3603942/1‑94 (MQ=60)
GCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTT > SRR4302537.1170286/1‑94 (MQ=60)
GCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTT < SRR4302537.738215/94‑1 (MQ=60)
CATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTA > SRR4302537.3911467/1‑94 (MQ=60)
CATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTA > SRR4302537.2641808/1‑94 (MQ=60)
ATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAA > SRR4302537.3452199/1‑94 (MQ=60)
TCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAAT < SRR4302537.3271613/94‑1 (MQ=60)
CAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATA < SRR4302537.6490603/94‑1 (MQ=60)
CAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATA > SRR4302537.1173892/1‑94 (MQ=60)
GAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAA > SRR4302537.4322260/1‑94 (MQ=60)
AACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAC > SRR4302537.5606888/1‑94 (MQ=60)
AACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAC > SRR4302537.5983468/1‑94 (MQ=60)
ACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACC > SRR4302537.6222790/1‑94 (MQ=60)
ACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACC > SRR4302537.3514895/1‑94 (MQ=60)
CGACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCC > SRR4302537.2335326/1‑94 (MQ=60)
GACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCA > SRR4302537.3933512/1‑94 (MQ=60)
GACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCA > SRR4302537.977977/1‑94 (MQ=60)
GACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCA > SRR4302537.943939/1‑94 (MQ=60)
GCCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAT < SRR4302537.1202332/94‑1 (MQ=60)
ACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAT > SRR4302537.4846903/1‑94 (MQ=60)
ACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAT > SRR4302537.577412/1‑94 (MQ=60)
ACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAT < SRR4302537.5008797/94‑1 (MQ=60)
ACCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCAT < SRR4302537.2123826/94‑1 (MQ=60)
CCGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATT < SRR4302537.6402743/94‑1 (MQ=60)
CGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTG > SRR4302537.3001796/1‑94 (MQ=60)
CGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTG < SRR4302537.2291189/94‑1 (MQ=60)
CGCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTG > SRR4302537.1633967/1‑94 (MQ=60)
GCCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGC > SRR4302537.2934270/1‑94 (MQ=60)
CCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCT > SRR4302537.2721034/1‑94 (MQ=60)
CCAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCT > SRR4302537.1118029/1‑94 (MQ=60)
CAGAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTG > SRR4302537.1839053/1‑94 (MQ=60)
GAGGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCG < SRR4302537.2858406/94‑1 (MQ=60)
GGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTT > SRR4302537.4989020/1‑94 (MQ=60)
GGCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTT > SRR4302537.2550490/1‑94 (MQ=60)
GCGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTT < SRR4302537.5488344/94‑1 (MQ=60)
CGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTA > SRR4302537.3033262/1‑94 (MQ=60)
CGTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTA > SRR4302537.116394/1‑94 (MQ=60)
GTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAT > SRR4302537.2930956/1‑94 (MQ=60)
GTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAT > SRR4302537.599616/1‑94 (MQ=60)
GTAAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAT < SRR4302537.693050/94‑1 (MQ=60)
AAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATAT < SRR4302537.3352305/94‑1 (MQ=60)
AAACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATAT > SRR4302537.5211390/1‑94 (MQ=60)
ACCCCGCTGTTTTTTGTCATATGTAAACCTCGATTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATT < SRR4302537.4011218/94‑1 (MQ=60)
AACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATT > SRR4302537.2345224/1‑94 (MQ=60)
AACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATT < SRR4302537.1789526/94‑1 (MQ=60)
AACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATT < SRR4302537.4215418/94‑1 (MQ=60)
ACCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTA > SRR4302537.2125929/1‑94 (MQ=60)
CCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAT < SRR4302537.6429419/94‑1 (MQ=60)
CCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAT > SRR4302537.1120861/1‑94 (MQ=60)
CCCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTAT < SRR4302537.1759601/94‑1 (MQ=60)
CCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATC < SRR4302537.2632055/94‑1 (MQ=60)
CCTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATC < SRR4302537.2065211/94‑1 (MQ=60)
CTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCG > SRR4302537.3219652/1‑94 (MQ=60)
CTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCG > SRR4302537.6209300/1‑94 (MQ=60)
CTCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCG < SRR4302537.1726869/94‑1 (MQ=60)
TCTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGT > SRR4302537.2949755/1‑94 (MQ=60)
CTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTC > SRR4302537.3719235/1‑94 (MQ=60)
CTGTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTC < SRR4302537.5608512/94‑1 (MQ=60)
CTGGTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTC < SRR4302537.2087291/94‑1 (MQ=60)
GTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGT > SRR4302537.1295115/1‑94 (MQ=60)
GTTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGT < SRR4302537.3017494/94‑1 (MQ=60)
TTTTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTG > SRR4302537.4596695/1‑94 (MQ=60)
TTTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCT > SRR4302537.5077400/1‑94 (MQ=60)
TTGGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTA > SRR4302537.1796121/1‑94 (MQ=60)
GGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATG > SRR4302537.3411325/1‑94 (MQ=60)
GGTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATG < SRR4302537.5862071/94‑1 (MQ=60)
GTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGG > SRR4302537.1528808/1‑94 (MQ=60)
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CCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGG > NC_000913/484746‑484932
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
