Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 559,119 T→C V67A (GTG→GCG)  sfmD → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913559,1190TC100.0% 935.6 / NA 269V67A (GTG→GCG) sfmDputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (135/134);  total (135/134)

Only 100 of 279 total aligned reads displayed.

GTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGTGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAAT  >  NC_000913/559029‑559208
                                                                                          |                                                                                         
gTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCgcgt                                                                                         <  1:5033464/93‑1 (MQ=255)
gTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCgcgt                                                                                         <  1:5481317/93‑1 (MQ=255)
gTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCgcgt                                                                                         >  1:5891669/1‑93 (MQ=255)
 ttATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTa                                                                                        >  2:3873577/1‑93 (MQ=255)
   aTTTCAACCCGGCATTTTTATTCGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATc                                                                                      <  1:6271613/93‑1 (MQ=255)
   aTTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATc                                                                                      >  2:4787683/1‑93 (MQ=255)
   aTTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATc                                                                                      <  2:2249894/93‑1 (MQ=255)
    tttCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCg                                                                                     <  2:1997404/93‑1 (MQ=255)
    tttCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCg                                                                                     >  2:2893479/1‑93 (MQ=255)
     ttCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCgg                                                                                    >  2:1331608/1‑93 (MQ=255)
       cAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGt                                                                                  >  2:1918070/1‑93 (MQ=255)
       cAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGt                                                                                  <  2:2789090/93‑1 (MQ=255)
        aaCCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTg                                                                                 <  2:5528077/93‑1 (MQ=255)
        aaCCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGGAATCATCAAACTGCGGGCGCGTCTCggcgg                                                                                 >  2:245769/1‑90 (MQ=255)
          cccGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGa                                                                               >  2:3667907/1‑93 (MQ=255)
           ccGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAt                                                                              <  1:3734539/93‑1 (MQ=255)
            cGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtc                                                                             >  1:474475/1‑93 (MQ=255)
            cGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtc                                                                             >  1:1908971/1‑93 (MQ=255)
             ggCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGTGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtct                                                                            >  1:26880/1‑93 (MQ=255)
             ggCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtct                                                                            >  1:6065628/1‑93 (MQ=255)
              gCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtctc                                                                           <  2:6384952/93‑1 (MQ=255)
              gCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAtctc                                                                           <  1:4285916/93‑1 (MQ=255)
               gaTTTTTATTAGAGAAGGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCACCCTGCGGGCGCGTATCGGGTGGATctct                                                                          <  1:573501/92‑1 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        <  1:1549534/93‑1 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        >  1:6415406/1‑93 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        >  2:2068403/1‑93 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        <  1:441468/93‑1 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        >  2:3018942/1‑93 (MQ=255)
                 tttttATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTgg                                                                        >  2:258909/1‑93 (MQ=255)
                    ttattaGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGt                                                                     >  1:2359292/1‑93 (MQ=255)
                     tattaGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTa                                                                    >  1:1689515/1‑93 (MQ=255)
                      attaGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTaa                                                                   >  1:787897/1‑93 (MQ=255)
                      attaGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTaa                                                                   >  2:4527679/1‑93 (MQ=255)
                      attaGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTaa                                                                   <  2:5330037/93‑1 (MQ=255)
                          gagaATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAatgat                                                               >  1:4903127/1‑93 (MQ=255)
                          gagaATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAatgat                                                               >  1:6157561/1‑93 (MQ=255)
                             aaTGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAg                                                            <  1:743/93‑1 (MQ=255)
                              aTGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGt                                                           >  2:5915477/1‑93 (MQ=255)
                               tGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGtt                                                          >  2:3260717/1‑93 (MQ=255)
                               tGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGtt                                                          >  2:2916793/1‑93 (MQ=255)
                               tGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAAACATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGtt                                                          >  1:4544456/1‑93 (MQ=255)
                                   acaTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCAtt                                                      >  1:3217701/1‑93 (MQ=255)
                                    caTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTg                                                     >  1:2975222/1‑93 (MQ=255)
                                    caTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTg                                                     >  2:761777/1‑93 (MQ=255)
                                    caTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGCAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTg                                                     >  1:2147460/1‑93 (MQ=255)
                                     aTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTgg                                                    >  2:3997786/1‑93 (MQ=255)
                                     aTCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTgg                                                    >  2:5144456/1‑93 (MQ=255)
                                      tCCGTTGCTGATTTATCGCGCTTTGAGAGTGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGt                                                   <  2:1014946/93‑1 (MQ=255)
                                      tCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGt                                                   >  1:946990/1‑93 (MQ=255)
                                      tCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGt                                                   >  2:1677845/1‑93 (MQ=255)
                                      tCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGt                                                   >  1:2068488/1‑93 (MQ=255)
                                       ccGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGtt                                                  <  1:1808747/93‑1 (MQ=255)
                                       ccGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGtt                                                  >  2:3101214/1‑93 (MQ=255)
                                          ttGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGc                                               >  2:2298130/1‑93 (MQ=255)
                                           tGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCa                                              >  1:1938484/1‑93 (MQ=255)
                                           tGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCa                                              >  2:154062/1‑93 (MQ=255)
                                            gCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAg                                             <  2:5759857/93‑1 (MQ=255)
                                             cTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAgg                                            >  1:1015092/1‑93 (MQ=255)
                                             cTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAgg                                            <  1:660791/93‑1 (MQ=255)
                                               gATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGat                                          >  1:4520589/1‑93 (MQ=255)
                                               gATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGat                                          <  2:4401043/93‑1 (MQ=255)
                                               gATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGat                                          <  1:820799/93‑1 (MQ=255)
                                                aTTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGata                                         >  2:5936923/1‑93 (MQ=255)
                                                aTTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGata                                         >  1:5998740/1‑93 (MQ=255)
                                                 tttATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGatat                                        <  2:925287/93‑1 (MQ=255)
                                                 tttATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGatat                                        >  2:1799932/1‑93 (MQ=255)
                                                  ttATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATc                                       >  2:4258866/1‑93 (MQ=255)
                                                   tATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCg                                      <  2:3913414/93‑1 (MQ=255)
                                                     tCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTa                                    >  2:6334076/1‑93 (MQ=255)
                                                     tCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTa                                    <  2:6221862/93‑1 (MQ=255)
                                                     tCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTa                                    <  1:5834728/93‑1 (MQ=255)
                                                     tCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTa                                    <  2:4478776/93‑1 (MQ=255)
                                                       gcgcTTTGAGAGAGGTAATCATCAGCCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAtt                                  <  1:1964249/93‑1 (MQ=255)
                                                       gcgcTTTGAGAGAGGTAATCATCAACCTGCGGGCTCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAtt                                  <  1:1084919/93‑1 (MQ=255)
                                                       gcgcTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAtt                                  <  2:1151373/93‑1 (MQ=255)
                                                       gcgcTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAtt                                  <  1:3574949/93‑1 (MQ=255)
                                                         gcTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTg                                <  2:4879955/93‑1 (MQ=255)
                                                         gcTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTg                                <  1:5410730/93‑1 (MQ=255)
                                                           tttGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGaa                              <  1:5555706/93‑1 (MQ=255)
                                                           tttGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGaa                              >  2:3163599/1‑93 (MQ=255)
                                                           tttGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGaa                              >  1:4017095/1‑93 (MQ=255)
                                                           tttGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGaa                              <  1:226819/93‑1 (MQ=255)
                                                           tttGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGaa                              <  2:5823460/93‑1 (MQ=255)
                                                               agagagGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGa                          <  2:4372170/93‑1 (MQ=255)
                                                                 agagGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGaca                        <  1:3479351/93‑1 (MQ=255)
                                                                    ggTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGacaaca                     >  2:6469725/1‑93 (MQ=255)
                                                                    ggTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGacaaca                     <  1:2486717/93‑1 (MQ=255)
                                                                    ggTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGacaaca                     <  1:2799957/93‑1 (MQ=255)
                                                                     gTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAg                    >  1:3628254/1‑93 (MQ=255)
                                                                           atcaACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATCTGAATCGACAACAGAAAATa              >  2:5625704/1‑93 (MQ=255)
                                                                             caACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACa            <  2:5051030/93‑1 (MQ=255)
                                                                             caACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACa            >  2:4662461/1‑93 (MQ=255)
                                                                              aaCCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAg           <  1:4762919/93‑1 (MQ=255)
                                                                               aCCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAgg          <  2:5377982/93‑1 (MQ=255)
                                                                                ccTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAggg         >  2:5889747/1‑92 (MQ=255)
                                                                                 cTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTg        >  1:1394445/1‑93 (MQ=255)
                                                                                  tGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGa       >  1:4181537/1‑93 (MQ=255)
                                                                                      ggCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATaaa   >  2:3444566/1‑93 (MQ=255)
                                                                                      ggCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATaaa   <  2:68135/93‑1 (MQ=255)
                                                                                      ggCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATaaa   <  2:2201893/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGTGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAAT  >  NC_000913/559029‑559208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGTGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  >  NC_000913/559027‑559212
                                                                                            |                                                                                             
AAGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCG                                                                                              >  SRR4302537.1033918/1‑94 (MQ=60)
AAGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCG                                                                                              >  SRR4302537.1476591/1‑94 (MQ=60)
 AGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGT                                                                                             >  SRR4302537.5932095/1‑94 (MQ=60)
  GTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTA                                                                                            <  SRR4302537.5518740/94‑1 (MQ=60)
  GTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTA                                                                                            <  SRR4302537.5068116/94‑1 (MQ=60)
   TTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTAT                                                                                           <  SRR4302537.1963020/94‑1 (MQ=60)
   TTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTAT                                                                                           <  SRR4302537.2668798/94‑1 (MQ=60)
   TTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTAT                                                                                           >  SRR4302537.4858664/1‑94 (MQ=60)
     ATTTCAACCCGGCATTTTTATTCGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCG                                                                                         <  SRR4302537.6314655/94‑1 (MQ=60)
      TTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGG                                                                                        <  SRR4302537.2335160/94‑1 (MQ=60)
       TTCAACCCGGCATTTTTATTAGAGAAGGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGG                                                                                       <  SRR4302537.3344199/94‑1 (MQ=60)
        TCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGT                                                                                      <  SRR4302537.3636331/94‑1 (MQ=60)
           ACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGTGCTTTGAGAAAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGA                                                                                   <  SRR4302537.6293073/94‑1 (MQ=60)
           ACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGA                                                                                   <  SRR4302537.790137/94‑1 (MQ=60)
           ACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGA                                                                                   >  SRR4302537.3158190/1‑94 (MQ=60)
            CCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGAT                                                                                  <  SRR4302537.2943882/94‑1 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 >  SRR4302537.477718/1‑94 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 >  SRR4302537.418525/1‑94 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 >  SRR4302537.6112546/1‑94 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 <  SRR4302537.3725652/94‑1 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 <  SRR4302537.3760770/94‑1 (MQ=60)
             CCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATC                                                                                 >  SRR4302537.1922224/1‑94 (MQ=60)
              CGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGTGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCT                                                                                >  SRR4302537.27093/1‑94 (MQ=60)
              CGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCT                                                                                >  SRR4302537.6107297/1‑94 (MQ=60)
              CGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATAATCAACCTGCGGGCGCGTATCGGGTGGATCT                                                                                >  SRR4302537.4269864/1‑94 (MQ=60)
                GCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCT                                                                              <  SRR4302537.1034199/94‑1 (MQ=60)
                GCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCT                                                                              >  SRR4302537.3905385/1‑94 (MQ=60)
                GCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCT                                                                              <  SRR4302537.4315706/94‑1 (MQ=60)
                GCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCT                                                                              >  SRR4302537.5013419/1‑94 (MQ=60)
                GCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCT                                                                              >  SRR4302537.2389677/1‑94 (MQ=60)
                 GATTTTTATTAGAGAAGGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCACCCTGCGGGCGCGTATCGGGTGGATCTCTG                                                                             <  SRR4302537.577441/94‑1 (MQ=60)
                 CATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTG                                                                             >  SRR4302537.1982483/1‑94 (MQ=60)
                  ATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGG                                                                            >  SRR4302537.6459040/1‑94 (MQ=60)
                  ATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGG                                                                            >  SRR4302537.773609/1‑94 (MQ=60)
                   TTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGC                                                                           <  SRR4302537.1560347/94‑1 (MQ=60)
                   TTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGC                                                                           >  SRR4302537.808714/1‑94 (MQ=60)
                   TTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGC                                                                           <  SRR4302537.444534/94‑1 (MQ=60)
                    TTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCG                                                                          >  SRR4302537.15015/1‑94 (MQ=60)
                    TTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCG                                                                          >  SRR4302537.3576599/1‑94 (MQ=60)
                     TTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGT                                                                         >  SRR4302537.2375934/1‑94 (MQ=60)
                      TTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTA                                                                        >  SRR4302537.1701343/1‑94 (MQ=60)
                       TATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAA                                                                       >  SRR4302537.793306/1‑94 (MQ=60)
                       TATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAA                                                                       >  SRR4302537.1924564/1‑94 (MQ=60)
                       TATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAA                                                                       >  SRR4302537.5988184/1‑94 (MQ=60)
                       TATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAA                                                                       >  SRR4302537.4778870/1‑94 (MQ=60)
                        ATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTACTCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAAT                                                                      <  SRR4302537.3477412/94‑1 (MQ=60)
                         TTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATG                                                                     <  SRR4302537.3723621/94‑1 (MQ=60)
                          TAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGA                                                                    >  SRR4302537.2049537/1‑94 (MQ=60)
                           AGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGAT                                                                   >  SRR4302537.6199938/1‑94 (MQ=60)
                           AGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGAT                                                                   >  SRR4302537.4936970/1‑94 (MQ=60)
                            GAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATG                                                                  >  SRR4302537.2877636/1‑94 (MQ=60)
                               AATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGT                                                               <  SRR4302537.751/94‑1 (MQ=60)
                                ATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTT                                                              <  SRR4302537.1244682/94‑1 (MQ=60)
                                ATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAAACATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTT                                                              >  SRR4302537.4575909/1‑94 (MQ=60)
                                  GGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCA                                                            >  SRR4302537.707505/1‑94 (MQ=60)
                                   GCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCAT                                                           <  SRR4302537.814085/94‑1 (MQ=60)
                                    CACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATT                                                          >  SRR4302537.3240342/1‑94 (MQ=60)
                                    CACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATT                                                          <  SRR4302537.4564186/94‑1 (MQ=60)
                                     ACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTG                                                         <  SRR4302537.5885872/94‑1 (MQ=60)
                                     ACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTG                                                         >  SRR4302537.2996054/1‑94 (MQ=60)
                                     ACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGCAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTG                                                         >  SRR4302537.2162564/1‑94 (MQ=60)
                                       ATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGT                                                       >  SRR4302537.953540/1‑94 (MQ=60)
                                       ATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGT                                                       <  SRR4302537.683896/94‑1 (MQ=60)
                                       ATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGT                                                       >  SRR4302537.2083022/1‑94 (MQ=60)
                                         CCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTC                                                     <  SRR4302537.1821364/94‑1 (MQ=60)
                                          CGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCG                                                    <  SRR4302537.3215544/94‑1 (MQ=60)
                                            TTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCA                                                  >  SRR4302537.1951964/1‑94 (MQ=60)
                                              GCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGG                                                >  SRR4302537.1022082/1‑94 (MQ=60)
                                              GCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGG                                                >  SRR4302537.833873/1‑94 (MQ=60)
                                               CTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGA                                               <  SRR4302537.665290/94‑1 (MQ=60)
                                               CTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGA                                               <  SRR4302537.431628/94‑1 (MQ=60)
                                               CTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGA                                               >  SRR4302537.4973962/1‑94 (MQ=60)
                                                TGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGAT                                              >  SRR4302537.1589019/1‑94 (MQ=60)
                                                TGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGAT                                              >  SRR4302537.4551858/1‑94 (MQ=60)
                                                 GATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATA                                             >  SRR4302537.6039947/1‑94 (MQ=60)
                                                 GATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATA                                             <  SRR4302537.826433/94‑1 (MQ=60)
                                                  ATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATAT                                            >  SRR4302537.6158365/1‑94 (MQ=60)
                                                  ATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATAT                                            <  SRR4302537.588852/94‑1 (MQ=60)
                                                  ATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATAT                                            <  SRR4302537.5340296/94‑1 (MQ=60)
                                                  ATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATAT                                            <  SRR4302537.4561946/94‑1 (MQ=60)
                                                  ATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGCTCATTGGTTCGCAGGATAC                                            >  SRR4302537.463713/1‑94 (MQ=60)
                                                    TTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCG                                          >  SRR4302537.5827355/1‑94 (MQ=60)
                                                     TATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGT                                         >  SRR4302537.4375626/1‑94 (MQ=60)
                                                      TTCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTATGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTA                                        <  SRR4302537.5458837/94‑1 (MQ=60)
                                                      ATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTA                                        >  SRR4302537.2433657/1‑94 (MQ=60)
                                                       TCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAT                                       <  SRR4302537.6051222/94‑1 (MQ=60)
                                                       TCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTAT                                       <  SRR4302537.5874719/94‑1 (MQ=60)
                                                        CGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATT                                      <  SRR4302537.4634101/94‑1 (MQ=60)
                                                        CGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATT                                      >  SRR4302537.2561465/1‑94 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAGCCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.1977908/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCTCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.1092403/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     >  SRR4302537.5468801/1‑94 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.3769293/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.3600161/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.5871422/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.4874841/94‑1 (MQ=60)
                                                         GCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTT                                     <  SRR4302537.1718909/94‑1 (MQ=60)
                                                           GCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGA                                   <  SRR4302537.5447627/94‑1 (MQ=60)
                                                           GCTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGA                                   <  SRR4302537.1931387/94‑1 (MQ=60)
                                                            CTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAA                                  >  SRR4302537.4045219/1‑94 (MQ=60)
                                                            CTTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAA                                  >  SRR4302537.3565184/1‑94 (MQ=60)
                                                             TTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAAT                                 <  SRR4302537.1294609/94‑1 (MQ=60)
                                                             TTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAAT                                 >  SRR4302537.4463423/1‑94 (MQ=60)
                                                             TTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAAT                                 >  SRR4302537.6456408/1‑94 (MQ=60)
                                                             TTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAAT                                 <  SRR4302537.5593638/94‑1 (MQ=60)
                                                             TTTGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAAT                                 <  SRR4302537.228427/94‑1 (MQ=60)
                                                               TGAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCG                               >  SRR4302537.5137069/1‑94 (MQ=60)
                                                                GAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGA                              <  SRR4302537.2203496/94‑1 (MQ=60)
                                                                GAGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGA                              >  SRR4302537.5528840/1‑94 (MQ=60)
                                                                 AGAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGAC                             >  SRR4302537.1548364/1‑94 (MQ=60)
                                                                  GAGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACA                            <  SRR4302537.2134941/94‑1 (MQ=60)
                                                                   AGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAA                           <  SRR4302537.3489506/94‑1 (MQ=60)
                                                                   AGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAA                           <  SRR4302537.2168180/94‑1 (MQ=60)
                                                                   AGAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAA                           <  SRR4302537.3503969/94‑1 (MQ=60)
                                                                    GAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAAC                          <  SRR4302537.4103221/94‑1 (MQ=60)
                                                                    GAGGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCAGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAAC                          <  SRR4302537.625399/94‑1 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        <  SRR4302537.86117/94‑1 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        >  SRR4302537.3653826/1‑94 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        <  SRR4302537.2819531/94‑1 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        <  SRR4302537.2796200/94‑1 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        <  SRR4302537.2504229/94‑1 (MQ=60)
                                                                      GGTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAG                        <  SRR4302537.5758758/94‑1 (MQ=60)
                                                                       GTAATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGA                       >  SRR4302537.1872097/1‑94 (MQ=60)
                                                                         AATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAA                     >  SRR4302537.2313930/1‑94 (MQ=60)
                                                                          ATCATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAA                    <  SRR4302537.5644140/94‑1 (MQ=60)
                                                                           ACATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAAT                   <  SRR4302537.6474675/94‑1 (MQ=60)
                                                                            TATCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATA                  <  SRR4302537.6249300/94‑1 (MQ=60)
                                                                              TCAACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACA                <  SRR4302537.5998236/94‑1 (MQ=60)
                                                                                AACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGG              <  SRR4302537.1852493/94‑1 (MQ=60)
                                                                                AACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGG              <  SRR4302537.4795812/94‑1 (MQ=60)
                                                                                 AGCTGGGGGCGCGTATCGGGTGGATCTCTGGAGTAATGATGAGTTAATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGT             <  SRR4302537.6428841/94‑1 (MQ=60)
                                                                                 ACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGT             >  SRR4302537.1623132/1‑94 (MQ=60)
                                                                                 ACCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGT             <  SRR4302537.4533259/94‑1 (MQ=60)
                                                                                  CCTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTG            >  SRR4302537.1404168/1‑94 (MQ=60)
                                                                                   CTGCGGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGA           >  SRR4302537.4210727/1‑94 (MQ=60)
                                                                                       GGGCGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAA       >  SRR4302537.1973128/1‑94 (MQ=60)
                                                                                          CGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCA    <  SRR4302537.586823/94‑1 (MQ=60)
                                                                                          CGCGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCA    <  SRR4302537.3337189/94‑1 (MQ=60)
                                                                                            CGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  <  SRR4302537.5008747/94‑1 (MQ=60)
                                                                                            CGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  >  SRR4302537.4866640/1‑94 (MQ=60)
                                                                                            CGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  <  SRR4302537.4882247/94‑1 (MQ=60)
                                                                                            CGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  >  SRR4302537.6161882/1‑94 (MQ=60)
                                                                                            |                                                                                             
AAGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATTTATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGTGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCGCAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGG  >  NC_000913/559027‑559212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑