Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	783,271	A→G	V259A (GTG→GCG)	ybgR ←	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	783,271	0	A	G	99.6%	786.6 / NA	233	V259A (GTG→GCG)	ybgR	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (113/118); minor base C (0/1); total (113/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 246 total aligned reads displayed.

ATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCACCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCA  >  NC_000913/783181‑783359

 tCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGGTCGCCt                                                                                       >  2:4394962/1‑93 (MQ=255)

 tCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCt                                                                                       >  1:5213102/1‑93 (MQ=255)

    gAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGca                                                                                    >  2:3081273/1‑93 (MQ=255)

     aaTGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGcac                                                                                   <  1:3999235/93‑1 (MQ=255)

     aaTGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGcac                                                                                   <  1:270795/93‑1 (MQ=255)

     aaTGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGcac                                                                                   <  2:6242894/93‑1 (MQ=255)

      aTGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGcaca                                                                                  <  1:301665/93‑1 (MQ=255)

         gtggCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGGTCGCCTGCACATGc                                                                               >  2:2065591/1‑93 (MQ=255)

         gtggCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGGACATGc                                                                               >  1:5150276/1‑93 (MQ=255)

         gtggCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGc                                                                               <  1:1102600/93‑1 (MQ=255)

         gtggCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGc                                                                               <  2:2020427/93‑1 (MQ=255)

             cGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACg                                                                           >  2:5982353/1‑93 (MQ=255)

             cGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACg                                                                           <  1:6225809/93‑1 (MQ=255)

              gTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGt                                                                          <  1:2574239/93‑1 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         >  2:647605/1‑93 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         >  1:1861747/1‑93 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         <  1:685399/93‑1 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         <  1:1246309/93‑1 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         <  1:4532000/93‑1 (MQ=255)

               tGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtc                                                                         <  1:4165608/93‑1 (MQ=255)

                 cTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtcat                                                                       <  2:4922889/93‑1 (MQ=255)

                 cTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtcat                                                                       <  1:1452304/93‑1 (MQ=255)

                 cTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCCGGGTCGCCTGCACATGCAACGtcat                                                                       >  2:2672882/1‑93 (MQ=255)

                  tCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtcatc                                                                      >  1:5919046/1‑93 (MQ=255)

                  tCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGtcatc                                                                      >  1:6249908/1‑93 (MQ=255)

                     aTCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCAcc                                                                   >  1:278423/1‑93 (MQ=255)

                     aTCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCAcc                                                                   >  2:1439619/1‑93 (MQ=255)

                      tCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGGCATCACCg                                                                  >  2:5781/1‑93 (MQ=255)

                        tGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGc                                                                >  2:4564775/1‑93 (MQ=255)

                        tGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGc                                                                >  2:379687/1‑93 (MQ=255)

                        tGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGc                                                                <  1:3201413/93‑1 (MQ=255)

                           tAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCttt                                                             >  1:1191661/1‑92 (MQ=255)

                           tAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTtc                                                             <  2:1041890/93‑1 (MQ=255)

                           tAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTtc                                                             <  1:5749185/93‑1 (MQ=255)

                             gTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTtctc                                                           <  2:314286/93‑1 (MQ=255)

                               gATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGc                                                         >  2:3731458/1‑93 (MQ=255)

                                  ccATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTa                                                      >  2:4124668/1‑93 (MQ=255)

                                   cATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAc                                                     >  1:6456025/1‑93 (MQ=255)

                                     tCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAcca                                                   >  2:6073471/1‑93 (MQ=255)

                                      cAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAccat                                                  >  2:3516662/1‑93 (MQ=255)

                                       aGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAccatc                                                 >  2:332847/1‑93 (MQ=255)

                                       aGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAccatc                                                 >  1:2623591/1‑93 (MQ=255)

                                         gTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAccatcca                                               >  1:6065825/1‑93 (MQ=255)

                                           aGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAta                                             <  1:5598688/93‑1 (MQ=255)

                                            gtgtTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtac                                            >  1:3659917/1‑93 (MQ=255)

                                              gtTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacac                                          <  1:3429077/93‑2 (MQ=255)

                                               ttGGATCTGATCCAACAAGGCATCGTGATCGTGTTGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTGCTCGCCTACCCTCCAtacatt                                         >  2:3058039/1‑92 (MQ=255)

                                                 ggATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCTGCTTCTCGCCTACCATCCAtacatgta                                       <  2:1679046/93‑1 (MQ=255)

                                                   aTCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtaca                                     <  1:1325135/93‑1 (MQ=255)

                                                   aTCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtaca                                     >  1:636355/1‑93 (MQ=255)

                                                   aTCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCCCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtaca                                     <  1:4770869/93‑1 (MQ=255)

                                                    tCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtacat                                    <  1:3622919/93‑1 (MQ=255)

                                                     cTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtacatg                                   <  1:6138579/93‑1 (MQ=255)

                                                     cTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtacatg                                   <  1:1570007/93‑1 (MQ=255)

                                                     cTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtacatg                                   >  2:5130947/1‑93 (MQ=255)

                                                     cTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCAtacatgtacatg                                   >  1:495867/1‑93 (MQ=255)

                                                      tGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATgg                                  <  1:2935342/93‑1 (MQ=255)

                                                      tGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATgg                                  >  1:1977456/1‑93 (MQ=255)

                                                       gATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGt                                 >  1:3365702/1‑93 (MQ=255)

                                                        aTCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTg                                >  2:2166245/1‑93 (MQ=255)

                                                         tCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGTCACGCTATCACCGGCTTCTCGCCTAACCTCCATCCATGGACATGGTGc                               >  2:5086939/1‑93 (MQ=255)

                                                          ccAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGca                              >  2:4531060/1‑93 (MQ=255)

                                                            aacaaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGcaca                            <  1:3308170/93‑1 (MQ=255)

                                                            aacaaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAAAGTCATCACCGGCTTTTCGCCTACCATCCATACATGTACATAGTGcaca                            >  1:3085541/1‑93 (MQ=255)

                                                             acaaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACAt                           >  2:576620/1‑93 (MQ=255)

                                                             acaaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACAt                           <  2:4733485/93‑1 (MQ=255)

                                                             acaaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATCGTGCACAt                           >  2:1649214/1‑93 (MQ=255)

                                                              caaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACAtt                          >  1:856026/1‑93 (MQ=255)

                                                               aaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTg                         <  1:6412509/93‑1 (MQ=255)

                                                               aaGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCAACGGCTTCTCGCCCACCATCCATACATGTACATGGTGCACATTg                         >  1:2480662/1‑93 (MQ=255)

                                                                aGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTgg                        >  2:18378/1‑92 (MQ=255)

                                                                 ggCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCg                       <  2:2593178/93‑1 (MQ=255)

                                                                   cATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGa                     <  2:1261735/93‑1 (MQ=255)

                                                                    atcgtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGAc                    <  1:3525366/93‑1 (MQ=255)

                                                                    atcgtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGAc                    >  1:2293741/1‑93 (MQ=255)

                                                                     tcgtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACt                   >  2:5943596/1‑93 (MQ=255)

                                                                     tcgtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACt                   <  1:3275256/93‑1 (MQ=255)

                                                                      cgtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACtt                  <  1:3840775/93‑1 (MQ=255)

                                                                       gtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTc                 <  2:194394/93‑1 (MQ=255)

                                                                       gtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTc                 >  2:2139958/1‑93 (MQ=255)

                                                                       gtgatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTc                 <  2:534766/93‑1 (MQ=255)

                                                                       gtgatcgtgTGGCGGGATCGCCTGCACATGCAACATCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTc                 <  2:4661740/93‑1 (MQ=255)

                                                                         gatcgtgTGGCGGGTTCGCCTGCACATGAAACGTCATCACCGGCTTCTCGCCTACCATCCATACATTAACATGGAGCACATTGCGGAATTCCg               >  2:4360661/1‑93 (MQ=255)

                                                                         gatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCg               <  2:1066228/93‑1 (MQ=255)

                                                                         gatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCg               <  2:6425906/93‑1 (MQ=255)

                                                                         gatcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCg               >  2:2979201/1‑93 (MQ=255)

                                                                          atcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCgg              >  1:5972661/1‑93 (MQ=255)

                                                                          atcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCgg              >  1:2425103/1‑93 (MQ=255)

                                                                          atcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCgg              >  2:2884181/1‑93 (MQ=255)

                                                                           tcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCggg             >  2:5493787/1‑93 (MQ=255)

                                                                           tcgtgTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCggg             >  2:2306239/1‑93 (MQ=255)

                                                                             gtgtGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAt           >  1:4343222/1‑93 (MQ=255)

                                                                             gtgtGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCCACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAt           >  1:5672845/1‑93 (MQ=255)

                                                                              tgtgGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAtt          <  2:4240787/93‑1 (MQ=255)

                                                                                tgGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTc        <  2:5866634/93‑1 (MQ=255)

                                                                                tgGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTc        <  1:3779569/93‑1 (MQ=255)

                                                                                tgGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTc        >  2:4866605/1‑93 (MQ=255)

                                                                                  gCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTccc      <  1:101393/93‑1 (MQ=255)

                                                                                   cGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCg     >  2:71160/1‑93 (MQ=255)

                                                                                      gATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGca  <  2:529781/93‑1 (MQ=255)

ATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCACCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCA  >  NC_000913/783181‑783359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCACCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATAC  >  NC_000913/783180‑783364

CATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCC                                                                                             <  SRR4302537.2387184/94‑1 (MQ=60)

 ATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCT                                                                                            <  SRR4302537.796986/94‑1 (MQ=60)

 ATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCT                                                                                            >  SRR4302537.5248946/1‑94 (MQ=60)

   CTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGC                                                                                          <  SRR4302537.6253955/94‑1 (MQ=60)

     GAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCAC                                                                                        <  SRR4302537.4887703/94‑1 (MQ=60)

      AATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACA                                                                                       >  SRR4302537.3350595/1‑94 (MQ=60)

      AATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACA                                                                                       <  SRR4302537.4027235/94‑1 (MQ=60)

      AATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACA                                                                                       <  SRR4302537.272701/94‑1 (MQ=60)

       ATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACAT                                                                                      <  SRR4302537.303765/94‑1 (MQ=60)

        TGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATG                                                                                     <  SRR4302537.1245789/94‑1 (MQ=60)

         GGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGGACATGC                                                                                    >  SRR4302537.5185766/1‑94 (MQ=60)

         GGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGC                                                                                    <  SRR4302537.2694903/94‑1 (MQ=60)

         GGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCCGCACATGT                                                                                    >  SRR4302537.1411213/1‑94 (MQ=60)

          GTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCA                                                                                   <  SRR4302537.3228308/94‑1 (MQ=60)

          GTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCA                                                                                   <  SRR4302537.1110218/94‑1 (MQ=60)

             GCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACG                                                                                <  SRR4302537.2854548/94‑1 (MQ=60)

              CGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGT                                                                               <  SRR4302537.6268650/94‑1 (MQ=60)

              CGTGCTCAATCTCATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGT                                                                               <  SRR4302537.6418697/94‑1 (MQ=60)

               GTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTC                                                                              >  SRR4302537.1162988/1‑94 (MQ=60)

               GTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTC                                                                              >  SRR4302537.1874712/1‑94 (MQ=60)

               GTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTC                                                                              <  SRR4302537.2592262/94‑1 (MQ=60)

               GTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGAGCGCCTGCGCATGCAACGTC                                                                              >  SRR4302537.3764563/1‑94 (MQ=60)

                TGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCA                                                                             <  SRR4302537.4194701/94‑1 (MQ=60)

                TGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCA                                                                             <  SRR4302537.4563384/94‑1 (MQ=60)

                TGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCA                                                                             <  SRR4302537.690102/94‑1 (MQ=60)

                TGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCA                                                                             <  SRR4302537.1254990/94‑1 (MQ=60)

                TGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGAGCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCA                                                                             <  SRR4302537.3500773/94‑1 (MQ=60)

                 GCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGGTCGCCTGCACAGGCAACGTCAT                                                                            >  SRR4302537.3972146/1‑94 (MQ=60)

                 GCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCAT                                                                            <  SRR4302537.4160689/94‑1 (MQ=60)

                 GCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCAT                                                                            <  SRR4302537.4777949/94‑1 (MQ=60)

                 GCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCAT                                                                            >  SRR4302537.5857088/1‑94 (MQ=60)

                  CTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATC                                                                           >  SRR4302537.5959665/1‑94 (MQ=60)

                  CTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATC                                                                           >  SRR4302537.6292842/1‑94 (MQ=60)

                  CTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATC                                                                           <  SRR4302537.1462424/94‑1 (MQ=60)

                  CTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATC                                                                           <  SRR4302537.2440896/94‑1 (MQ=60)

                   TCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCA                                                                          <  SRR4302537.1678408/94‑1 (MQ=60)

                     AATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACC                                                                        >  SRR4302537.280365/1‑94 (MQ=60)

                      ATNNNANANTGNTCCGTCAGGNNGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCG                                                                       <  SRR4302537.3108217/94‑1 (MQ=60)

                      ATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCG                                                                       <  SRR4302537.3632399/94‑1 (MQ=60)

                         TGATAGTGATCCATGAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGGCTGCACATGCAACGTCATCACCGGCT                                                                    <  SRR4302537.1324641/94‑1 (MQ=60)

                         TGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCT                                                                    <  SRR4302537.3223920/94‑1 (MQ=60)

                           ATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTT                                                                  >  SRR4302537.1199934/1‑94 (MQ=60)

                            TAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCT                                                                 <  SRR4302537.5788562/94‑1 (MQ=60)

                             AGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTC                                                                <  SRR4302537.4530167/94‑1 (MQ=60)

                             AGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTC                                                                <  SRR4302537.5185416/94‑1 (MQ=60)

                                 ATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCT                                                            <  SRR4302537.2678679/94‑1 (MQ=60)

                                 ATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCT                                                            >  SRR4302537.4268384/1‑94 (MQ=60)

                                 ATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCT                                                            >  SRR4302537.1240212/1‑94 (MQ=60)

                                   CCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACCTGCAACGTCATCACCGGCTTCTCGCCTAC                                                          >  SRR4302537.62821/1‑94 (MQ=60)

                                   CCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTAC                                                          >  SRR4302537.6499788/1‑94 (MQ=60)

                                      TCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCAT                                                       >  SRR4302537.5221632/1‑94 (MQ=60)

                                       CAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACCTGCAACGTCATCACCGGCTTCTCGCCTACCATC                                                      >  SRR4302537.3363261/1‑94 (MQ=60)

                                       CAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATC                                                      >  SRR4302537.2641979/1‑94 (MQ=60)

                                       CAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATC                                                      >  SRR4302537.3856907/1‑94 (MQ=60)

                                       CAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATC                                                      <  SRR4302537.6479430/94‑1 (MQ=60)

                                       CAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATC                                                      >  SRR4302537.3676049/1‑94 (MQ=60)

                                        AGGTAGGGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCC                                                     <  SRR4302537.104834/94‑1 (MQ=60)

                                         GGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCA                                                    >  SRR4302537.6107494/1‑94 (MQ=60)

                                           TAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATA                                                  <  SRR4302537.2860529/94‑1 (MQ=60)

                                           TAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATA                                                  <  SRR4302537.5911384/94‑1 (MQ=60)

                                           TAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATA                                                  >  SRR4302537.394294/1‑94 (MQ=60)

                                            AGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATAC                                                 <  SRR4302537.5636965/94‑1 (MQ=60)

                                            AGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATAC                                                 >  SRR4302537.3685676/1‑94 (MQ=60)

                                            AGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATAC                                                 <  SRR4302537.6046317/94‑1 (MQ=60)

                                             GTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACA                                                <  SRR4302537.648455/94‑1 (MQ=60)

                                               GTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATG                                              >  SRR4302537.854786/1‑94 (MQ=60)

                                               GTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATG                                              <  SRR4302537.6353214/94‑1 (MQ=60)

                                               GTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATG                                              <  SRR4302537.2603267/94‑1 (MQ=60)

                                               GTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACACG                                              <  SRR4302537.3453347/94‑1 (MQ=60)

                                                   GATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACA                                          >  SRR4302537.640683/1‑94 (MQ=60)

                                                    ATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACAT                                         <  SRR4302537.6072232/94‑1 (MQ=60)

                                                    ATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACAT                                         <  SRR4302537.1920594/94‑1 (MQ=60)

                                                    ATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACAT                                         <  SRR4302537.1334373/94‑1 (MQ=60)

                                                    ATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCCCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACAT                                         <  SRR4302537.4803809/94‑1 (MQ=60)

                                                     TCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATG                                        >  SRR4302537.305511/1‑94 (MQ=60)

                                                     TCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATG                                        >  SRR4302537.499279/1‑94 (MQ=60)

                                                     TCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATG                                        <  SRR4302537.3648453/94‑1 (MQ=60)

                                                      CTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGG                                       >  SRR4302537.1991197/1‑94 (MQ=60)

                                                      CTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGG                                       <  SRR4302537.1580963/94‑1 (MQ=60)

                                                      CTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGG                                       <  SRR4302537.6180787/94‑1 (MQ=60)

                                                       TGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTTGCCTACCATCCATACATGTACATGGT                                      >  SRR4302537.2773811/1‑94 (MQ=60)

                                                       TGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGT                                      >  SRR4302537.3389541/1‑94 (MQ=60)

                                                       TGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGT                                      <  SRR4302537.2955951/94‑1 (MQ=60)

                                                        GATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTG                                     <  SRR4302537.5720444/94‑1 (MQ=60)

                                                        GATCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTG                                     <  SRR4302537.1341476/94‑1 (MQ=60)

                                                          TCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCC                                   >  SRR4302537.5679244/1‑94 (MQ=60)

                                                          TCCAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCA                                   >  SRR4302537.3449159/1‑94 (MQ=60)

                                                            CAACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAAAGTCATCACCGGCTTTTCGCCTACCATCCATACATGTACATAGTGCACA                                 >  SRR4302537.3107039/1‑94 (MQ=60)

                                                             AACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACAT                                <  SRR4302537.3331568/94‑1 (MQ=60)

                                                             AACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACAT                                <  SRR4302537.5319973/94‑1 (MQ=60)

                                                              ACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATT                               <  SRR4302537.1534190/94‑1 (MQ=60)

                                                              ACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATT                               >  SRR4302537.866135/1‑94 (MQ=60)

                                                              ACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATT                               >  SRR4302537.861901/1‑94 (MQ=60)

                                                              ACAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATT                               <  SRR4302537.1590079/94‑1 (MQ=60)

                                                               CAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTG                              <  SRR4302537.5983641/94‑1 (MQ=60)

                                                               CAAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCAACGGCTTCTCGCCCACCATCCATACATGTACATGGTGCACATTG                              >  SRR4302537.2498098/1‑94 (MQ=60)

                                                                AAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGC                             >  SRR4302537.652020/1‑94 (MQ=60)

                                                                AAGGCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGC                             <  SRR4302537.6456130/94‑1 (MQ=60)

                                                                 AGGCATCGTGATCGTGTGGCGGGATCTCCTGCACATGCAACGTCAGCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCG                            <  SRR4302537.2488513/94‑1 (MQ=60)

                                                                 AGGCATCGTGATCGTGTGGCGGGATCGCCTGCACACGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCG                            <  SRR4302537.3256918/94‑1 (MQ=60)

                                                                 AGGCATCGTGATCGTGTGCCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCG                            <  SRR4302537.4227388/94‑1 (MQ=60)

                                                                   GCATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGA                          <  SRR4302537.3541542/94‑1 (MQ=60)

                                                                    CATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGAC                         >  SRR4302537.529982/1‑94 (MQ=60)

                                                                    CATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGAC                         >  SRR4302537.4662569/1‑94 (MQ=60)

                                                                    CATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGAC                         >  SRR4302537.2309932/1‑94 (MQ=60)

                                                                     ATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACT                        <  SRR4302537.3550304/94‑1 (MQ=60)

                                                                     ATCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACT                        >  SRR4302537.3774484/1‑94 (MQ=60)

                                                                      TCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTT                       <  SRR4302537.3298367/94‑1 (MQ=60)

                                                                      TCGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTT                       >  SRR4302537.2058968/1‑94 (MQ=60)

                                                                       CGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTC                      <  SRR4302537.3867679/94‑1 (MQ=60)

                                                                       CGTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCAACACCGGCTTCTCGCCTACCATCCATACATGTACActgtggacattgaggagttc                      >  SRR4302537.5773082/1‑74 (MQ=60)

                                                                        GTGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCC                     <  SRR4302537.6387561/94‑1 (MQ=60)

                                                                         TGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATTTACATGGTGCACATTGCGGACTTCCG                    >  SRR4302537.3070142/1‑94 (MQ=60)

                                                                         TGATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCG                    <  SRR4302537.246919/94‑1 (MQ=60)

                                                                          GATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGG                   >  SRR4302537.6013655/1‑94 (MQ=60)

                                                                          GATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGG                   <  SRR4302537.2090519/94‑1 (MQ=60)

                                                                          GATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGG                   <  SRR4302537.3307087/94‑1 (MQ=60)

                                                                          GATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGG                   >  SRR4302537.2442194/1‑94 (MQ=60)

                                                                           ATCGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGG                  <  SRR4302537.6256546/94‑1 (MQ=60)

                                                                             CGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAT                >  SRR4302537.5044134/1‑94 (MQ=60)

                                                                             CGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAT                >  SRR4302537.4373342/1‑94 (MQ=60)

                                                                             CGTGTGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCCACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGAT                >  SRR4302537.5711660/1‑94 (MQ=60)

                                                                                 TGGCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCC            <  SRR4302537.3806111/94‑1 (MQ=60)

                                                                                   GCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCG          <  SRR4302537.6153218/94‑1 (MQ=60)

                                                                                   GCGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCG          <  SRR4302537.102122/94‑1 (MQ=60)

                                                                                    CGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGG         >  SRR4302537.3163544/1‑94 (MQ=60)

                                                                                    CGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGG         <  SRR4302537.2966784/94‑1 (MQ=60)

                                                                                    CGGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGG         >  SRR4302537.1364954/1‑94 (MQ=60)

                                                                                     GGGATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGC        >  SRR4302537.2502947/1‑94 (MQ=60)

                                                                                        ATCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACA     >  SRR4302537.5521431/1‑94 (MQ=60)

                                                                                         TCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACAT    <  SRR4302537.948545/94‑1 (MQ=60)

                                                                                         TCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACAT    <  SRR4302537.1368602/94‑1 (MQ=60)

                                                                                         TCGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACAT    <  SRR4302537.2188387/94‑1 (MQ=60)

                                                                                          CGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATA   <  SRR4302537.796918/94‑1 (MQ=60)

                                                                                          CGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATA   <  SRR4302537.3003267/94‑1 (MQ=60)

                                                                                          CGCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATA   >  SRR4302537.2129743/1‑94 (MQ=60)

                                                                                           GCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATAC  >  SRR4302537.5879354/1‑94 (MQ=60)

                                                                                           GCCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATAC  >  SRR4302537.4992844/1‑94 (MQ=60)

CATCTGAATGGTGGCGTGCTCAATCTGATAGTGATCCATCAGGTAGTGTTGGATCTGATCCAACAAGGCATCGTGATCGTGTGGCGGGATCACCTGCACATGCAACGTCATCACCGGCTTCTCGCCTACCATCCATACATGTACATGGTGCACATTGCGGACTTCCGGGATTTCCCGGCACATAC  >  NC_000913/783180‑783364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`