Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
842,823 |
+C |
coding (1881/2226 nt) |
ybiO ← |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 842,821 | 1 | . | C | 97.8%
| 613.0
/ 5.3
| 179 | coding (1883/2226 nt) | ybiO | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (3/1); new base C (89/86); total (92/87) |
| Fisher's exact test for biased strand distribution p-value = 6.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 |
Only 100 of 203 total aligned reads displayed.
TTTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCACGGAATGATGTGATACGCCCCGGTATCCTGTCGTA > NC_000913/842729‑842908
|
tttCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca > 1:5137461/1‑93 (MQ=255)
tttCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca < 2:3180666/93‑1 (MQ=255)
tttCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca > 1:2314790/1‑93 (MQ=255)
ttcttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑c > 2:313241/1‑93 (MQ=255)
tcttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑cc > 1:447390/1‑93 (MQ=255)
tcttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑cc > 1:5778878/1‑93 (MQ=255)
tcttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑cc > 1:994818/1‑93 (MQ=255)
cttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑ccc > 1:4147895/1‑92 (MQ=255)
ttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑ccca > 2:856302/1‑91 (MQ=255)
ttcGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑cca‑ccca > 2:3934616/1‑91 (MQ=255)
ttCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAAc < 2:4182025/93‑1 (MQ=255)
ccATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCa > 1:1989989/1‑93 (MQ=255)
cATTAATTCCGCTACCGCATCTTTCAGTGCCTNATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCaa < 2:5046955/93‑1 (MQ=255)
aTTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAAt > 2:479465/1‑93 (MQ=255)
ttAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATg > 2:6351557/1‑93 (MQ=255)
aTTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCcg > 2:22473/1‑93 (MQ=255)
ccGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGTGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCgg < 1:4553290/93‑1 (MQ=255)
ccGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCgg > 2:1901635/1‑93 (MQ=255)
gCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGAc > 2:2390044/1‑93 (MQ=255)
tACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACaaa > 2:540644/1‑93 (MQ=255)
aCCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACaaa > 2:524621/1‑93 (MQ=255)
aCCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACaaa > 1:2482036/1‑93 (MQ=255)
ccGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAg > 1:5121191/1‑93 (MQ=255)
ccGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGt > 1:4370491/1‑93 (MQ=255)
cGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGt < 2:80719/93‑1 (MQ=255)
cATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTa > 1:2926385/1‑93 (MQ=255)
cATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTa < 2:4562883/93‑1 (MQ=255)
aTCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAg > 1:2780836/1‑93 (MQ=255)
aTCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAg > 1:640379/1‑93 (MQ=255)
cTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCa < 2:278596/93‑1 (MQ=255)
tttCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCaa > 1:3210975/1‑93 (MQ=255)
tttCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCaa > 2:538509/1‑93 (MQ=255)
ttCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCaaa < 1:3294853/93‑1 (MQ=255)
aGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAggt < 1:4505129/93‑1 (MQ=255)
gTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAggtg < 1:64361/93‑1 (MQ=255)
gTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAggtg < 2:5070455/93‑1 (MQ=255)
gCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAggtggt < 1:662162/93‑1 (MQ=255)
cTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTa < 2:2869036/93‑1 (MQ=255)
cTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTa < 2:2308955/93‑1 (MQ=255)
tGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTAt < 1:4714531/93‑1 (MQ=255)
tGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTAt < 1:3893357/93‑1 (MQ=255)
gATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATc > 2:4981846/1‑93 (MQ=255)
ttGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTT‑CCACCCACCGAACCAATGCCTCGGACAAAGTTAGCAAAGTGGGTTATCGa > 2:3515030/1‑93 (MQ=255)
ttGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGCACCAATGCCGCGGACACAGTTAGCAAAGGTGGTTATCGa > 2:169321/1‑93 (MQ=255)
ttGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGa > 1:3513954/1‑93 (MQ=255)
tGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGACCCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGaa < 1:376581/93‑1 (MQ=255)
tGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGaa < 1:2102930/93‑1 (MQ=255)
ggCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAg < 1:189706/93‑1 (MQ=255)
gatttATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAgc > 2:4076388/3‑92 (MQ=255)
gCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGa < 1:38305/93‑1 (MQ=255)
cTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAc < 2:371396/93‑1 (MQ=255)
cTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAc < 1:5052084/93‑1 (MQ=255)
tttATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAcc < 1:844556/93‑1 (MQ=255)
tttATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAcc > 2:2549684/1‑93 (MQ=255)
ttATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAccg > 2:2355535/1‑92 (MQ=255)
aTCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACcgcg > 1:3144453/1‑93 (MQ=255)
tCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCgg > 2:2937864/1‑93 (MQ=255)
cAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGa < 2:2230007/93‑1 (MQ=255)
aGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGaa < 1:5342834/93‑1 (MQ=255)
aGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGaa < 2:1741544/93‑1 (MQ=255)
gCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAat > 1:5938338/1‑93 (MQ=255)
gCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAat < 1:1448048/93‑1 (MQ=255)
aTCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAatga < 2:1871717/93‑1 (MQ=255)
tCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAatgat > 1:5689837/1‑93 (MQ=255)
tttCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAatgatg < 1:1563202/92‑1 (MQ=255)
cTTCAGGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGTCCGCGGAatgatg < 2:1094548/93‑1 (MQ=255)
tgcATGGCGATAAACATCATAATTTC‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAtgt < 2:1037512/91‑1 (MQ=255)
tCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAtgtg > 2:165165/1‑93 (MQ=255)
tCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAtgtg > 1:4264882/1‑93 (MQ=255)
tCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAtgtg < 2:6129431/93‑1 (MQ=255)
cATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGa > 2:1267637/1‑93 (MQ=255)
aTGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGaa > 2:1946382/1‑92 (MQ=255)
aTGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGAt < 1:5513955/93‑1 (MQ=255)
tgccGATCATCATCATAATTGG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATa < 1:3755109/90‑1 (MQ=255)
tGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATa > 2:3589714/1‑93 (MQ=255)
ggCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATAc < 1:3330165/93‑1 (MQ=255)
ggCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATAc < 1:605578/93‑1 (MQ=255)
gCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACg < 2:2673282/93‑1 (MQ=255)
gCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACg < 2:4233971/93‑1 (MQ=255)
gATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGcc < 1:4089430/93‑1 (MQ=255)
gATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGcc > 2:5360096/1‑93 (MQ=255)
aTCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGccc < 2:4399940/93‑1 (MQ=255)
aTCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGCTAGGAAATGTGGTTATCGAAGACCGTGGCATGATGTGACACGctc > 2:6445272/1‑91 (MQ=255)
tCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGcccc < 1:2997940/93‑1 (MQ=255)
aaCATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCgg > 2:1197398/1‑93 (MQ=255)
aCATCATAATTTGCCCC‑CCACCGAACCAAGCCCGCGGCAAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGt < 1:2564545/93‑1 (MQ=255)
aCATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGt < 1:4281634/93‑1 (MQ=255)
catcatAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTa > 2:3727224/1‑93 (MQ=255)
atcatAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTAt > 1:2211581/1‑93 (MQ=255)
atcatAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTAt > 1:1742904/1‑93 (MQ=255)
tcatAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATc < 2:2120149/93‑1 (MQ=255)
catAACTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATcc < 1:6336258/93‑1 (MQ=255)
tAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTg > 2:5638086/1‑93 (MQ=255)
aaTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGt < 1:1273928/93‑1 (MQ=255)
aaTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGt < 1:107424/93‑1 (MQ=255)
aaTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGt < 2:2006821/93‑1 (MQ=255)
aTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTc > 2:6032007/1‑93 (MQ=255)
aTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTc > 2:4513367/1‑93 (MQ=255)
aTTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTc > 2:3312889/1‑93 (MQ=255)
tttG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCg > 1:4643461/1‑93 (MQ=255)
|
TTTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCACGGAATGATGTGATACGCCCCGGTATCCTGTCGTA > NC_000913/842729‑842908
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCACGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG > NC_000913/842730‑842916
|
TTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CC > SRR4302537.5818486/1‑94 (MQ=60)
TTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CC > SRR4302537.1001687/1‑94 (MQ=60)
TTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CC > SRR4302537.450492/1‑94 (MQ=60)
TCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCC > SRR4302537.4176845/1‑94 (MQ=60)
CTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCca > SRR4302537.5746336/1‑92 (MQ=60)
CTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCca > SRR4302537.2781170/1‑92 (MQ=60)
TTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCcac > SRR4302537.1118945/1‑91 (MQ=60)
TCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACC < SRR4302537.3113539/94‑1 (MQ=60)
CGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCG > SRR4302537.1214644/1‑94 (MQ=60)
TCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCA > SRR4302537.2003821/1‑94 (MQ=60)
CCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAA < SRR4302537.1999500/94‑1 (MQ=60)
TAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCC > SRR4302537.1299173/1‑94 (MQ=60)
ATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGC < SRR4302537.6470274/94‑1 (MQ=60)
CCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGTGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGA < SRR4302537.4584797/94‑1 (MQ=60)
CGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACA > SRR4302537.6488681/1‑94 (MQ=60)
CTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAA > SRR4302537.1847176/1‑94 (MQ=60)
CTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAA < SRR4302537.4978799/94‑1 (MQ=60)
TACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAA > SRR4302537.2499484/1‑94 (MQ=60)
ACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAG > SRR4302537.5156490/1‑94 (MQ=60)
ACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGT > SRR4302537.4400693/1‑94 (MQ=60)
CCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGT > SRR4302537.4759309/1‑94 (MQ=60)
CCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGT < SRR4302537.1549940/94‑1 (MQ=60)
GCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTA > SRR4302537.2946935/1‑94 (MQ=60)
CATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAG > SRR4302537.2800280/1‑94 (MQ=60)
CATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAG > SRR4302537.2211134/1‑94 (MQ=60)
CATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAG > SRR4302537.644742/1‑94 (MQ=60)
ATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGC > SRR4302537.3910897/1‑94 (MQ=60)
ATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGCTAGC > SRR4302537.45435/1‑94 (MQ=60)
CTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAA > SRR4302537.4389055/1‑94 (MQ=60)
CTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAA > SRR4302537.3233559/1‑94 (MQ=60)
TTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG < SRR4302537.3318140/94‑1 (MQ=60)
CAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT < SRR4302537.2986647/94‑1 (MQ=60)
AGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG < SRR4302537.4536282/94‑1 (MQ=60)
GTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG < SRR4302537.64839/94‑1 (MQ=60)
TGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT > SRR4302537.3216810/1‑94 (MQ=60)
GCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTT < SRR4302537.6412879/94‑1 (MQ=60)
GCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTT < SRR4302537.3972735/94‑1 (MQ=60)
GCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTT < SRR4302537.666668/94‑1 (MQ=60)
CTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTAT < SRR4302537.6324695/94‑1 (MQ=60)
CTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTAT > SRR4302537.4510231/1‑94 (MQ=60)
TGATTGGCTTTATCAGCATCTTCATGGCGATCAACCTCATAATTTG‑CCACCCCCCGAACCACTGCCGCGGACACAGTTAGCAAAGGTGcatata > SRR4302537.672186/1‑88 (MQ=60)
TGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATC < SRR4302537.4747138/94‑1 (MQ=60)
TGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATC < SRR4302537.3920577/94‑1 (MQ=60)
GATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATAG > SRR4302537.4171930/1‑94 (MQ=60)
ATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGA > SRR4302537.2313340/1‑94 (MQ=60)
ATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGA > SRR4302537.3538813/1‑94 (MQ=60)
TTGGCTTTATCAGGATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAA < SRR4302537.5997837/94‑1 (MQ=60)
TGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGACCCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAG < SRR4302537.379193/94‑1 (MQ=60)
TGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAG < SRR4302537.2117759/94‑1 (MQ=60)
GGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGA < SRR4302537.191057/94‑1 (MQ=60)
GGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGA > SRR4302537.5528813/1‑94 (MQ=60)
GCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAC < SRR4302537.5105965/94‑1 (MQ=60)
GCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAC < SRR4302537.38596/94‑1 (MQ=60)
GCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGAC > SRR4302537.980994/1‑94 (MQ=60)
CTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACC < SRR4302537.5086867/94‑1 (MQ=60)
CTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACC < SRR4302537.3657089/94‑1 (MQ=60)
TTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCG < SRR4302537.850341/94‑1 (MQ=60)
TTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCG > SRR4302537.4268837/1‑94 (MQ=60)
TATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCG < SRR4302537.2872740/94‑1 (MQ=60)
TATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCG > SRR4302537.3166523/1‑94 (MQ=60)
TATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCG > SRR4302537.596990/1‑94 (MQ=60)
AGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAAT > SRR4302537.5979092/1‑94 (MQ=60)
AGCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAAT < SRR4302537.5379449/94‑1 (MQ=60)
GCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATG < SRR4302537.2040575/94‑1 (MQ=60)
GCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATG > SRR4302537.1679639/1‑94 (MQ=60)
GCATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATG < SRR4302537.1458138/94‑1 (MQ=60)
ATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAT > SRR4302537.5728754/1‑94 (MQ=60)
ATCTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGAT > SRR4302537.2457857/1‑94 (MQ=60)
TTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGT < SRR4302537.1574109/94‑1 (MQ=60)
CTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGT < SRR4302537.5665589/94‑1 (MQ=60)
CTTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGT > SRR4302537.3284961/1‑94 (MQ=60)
TTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTG > SRR4302537.4294517/1‑94 (MQ=60)
TTCATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTG > SRR4302537.4633146/1‑94 (MQ=60)
ATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATA < SRR4302537.5551608/94‑1 (MQ=60)
ATGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATA < SRR4302537.3823741/94‑1 (MQ=60)
TGGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATAC < SRR4302537.3781655/94‑1 (MQ=60)
TGCCGATCATCATCATAATTGG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATAC < SRR4302537.3781477/94‑1 (MQ=60)
GGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACG < SRR4302537.609717/94‑1 (MQ=60)
GGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACG < SRR4302537.2517837/94‑1 (MQ=60)
GGCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACG < SRR4302537.3353727/94‑1 (MQ=60)
GCGATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGC < SRR4302537.5168513/94‑1 (MQ=60)
GATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCC < SRR4302537.4117987/94‑1 (MQ=60)
ATCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCC < SRR4302537.828660/94‑1 (MQ=60)
TCAACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCG < SRR4302537.3018840/94‑1 (MQ=60)
ACATCATAATTTGCCCC‑CCACCGAACCAAGCCCGCGGCAAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTA < SRR4302537.2582514/94‑1 (MQ=60)
ACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTA > SRR4302537.5243665/1‑94 (MQ=60)
ACATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTA < SRR4302537.4311400/94‑1 (MQ=60)
CATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTAT > SRR4302537.1755055/1‑94 (MQ=60)
CATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTAT < SRR4302537.4481776/94‑1 (MQ=60)
CATCATAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTAT > SRR4302537.2227174/1‑94 (MQ=60)
CATAACTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCT < SRR4302537.6379571/94‑1 (MQ=60)
TAATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGT < SRR4302537.335955/94‑1 (MQ=60)
AATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTC < SRR4302537.108205/94‑1 (MQ=60)
AATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTC < SRR4302537.1282785/94‑1 (MQ=60)
AATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTC < SRR4302537.4304870/94‑1 (MQ=60)
ATTTG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCG > SRR4302537.4675573/1‑94 (MQ=60)
TG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTAC < SRR4302537.3325835/94‑1 (MQ=60)
TG‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTAC < SRR4302537.4709866/94‑1 (MQ=60)
G‑CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACG < SRR4302537.1612721/94‑1 (MQ=60)
CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGC > SRR4302537.331160/1‑94 (MQ=60)
CCACCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGC > SRR4302537.1486563/1‑94 (MQ=60)
cacCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCC > SRR4302537.3264125/4‑94 (MQ=60)
acCCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCC > SRR4302537.2072904/3‑94 (MQ=60)
C‑CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCA > SRR4302537.3549347/1‑94 (MQ=60)
CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCAC > SRR4302537.363142/1‑94 (MQ=60)
CGCCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG > SRR4302537.5417268/1‑94 (MQ=60)
CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG > SRR4302537.2372693/1‑94 (MQ=60)
CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG < SRR4302537.892838/94‑1 (MQ=60)
CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCGCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG > SRR4302537.3111942/1‑94 (MQ=60)
CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCCCGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG < SRR4302537.3484855/94‑1 (MQ=60)
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TTCTTCGTTTTCCATTAATTCCGCTACCGCATCTTTCAGTGCCTGATTGGCTTTATCAGCATCTTCATGGCGATCAACATCATAATTTG‑CCA‑CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTTATCGAAGACCACGGAATGATGTGATACGCCCCGGTATCCTGTCGTACGCCCACG > NC_000913/842730‑842916
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
