Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,006,918 A→G M207V (ATG→GTG)  yedE → putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,006,9180AG97.7% 570.1 / 0.3 173M207V (ATG→GTG) yedEputative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base G (81/88);  total (82/91)
Fisher's exact test for biased strand distribution p-value = 6.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01

Only 100 of 182 total aligned reads displayed.

ATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAA  >  NC_000913/2006828‑2007007
                                                                                          |                                                                                         
aTGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTg                                                                                         <  1:3470498/93‑1 (MQ=255)
aTGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTg                                                                                         >  2:3844134/1‑93 (MQ=255)
 tGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgc                                                                                        >  2:1830689/1‑93 (MQ=255)
 tGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgc                                                                                        >  2:2079462/1‑93 (MQ=255)
  gCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgct                                                                                       <  2:4898167/93‑1 (MQ=255)
  gCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgct                                                                                       >  1:4451458/1‑93 (MQ=255)
   gaGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctg                                                                                      <  2:1128126/92‑1 (MQ=255)
    aGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctgg                                                                                     <  1:6396184/93‑1 (MQ=255)
      aaaGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctgggc                                                                                   <  2:4533101/93‑1 (MQ=255)
       aaGTTTCTGCCGCCTCACCGCTGCAGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGCTGCTGGTCTTTTTCGGCATgctgggct                                                                                  >  1:2775032/1‑93 (MQ=255)
       aaGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctgggct                                                                                  >  1:5966050/1‑93 (MQ=255)
       aaGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctgggct                                                                                  <  2:3127145/93‑1 (MQ=255)
        aGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTgctgggctg                                                                                 >  1:4454852/1‑93 (MQ=255)
             cTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGgcgc                                                                            >  1:6271657/1‑93 (MQ=255)
              tGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCgct                                                                           >  2:5016464/1‑93 (MQ=255)
              tGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCgct                                                                           >  1:829835/1‑93 (MQ=255)
               gccgccTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCgctg                                                                          >  2:4118406/1‑93 (MQ=255)
                  gccTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTc                                                                       >  2:5097322/1‑93 (MQ=255)
                    cTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTcac                                                                     >  2:4961675/1‑93 (MQ=255)
                    cTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTcac                                                                     <  2:2457047/93‑1 (MQ=255)
                      cACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAg                                                                   <  2:131315/93‑1 (MQ=255)
                       aCCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGc                                                                  >  2:3970591/1‑93 (MQ=255)
                       aCCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTGTTTCGGCGCGCTGGGCTGGGCGCTGCTCACAGc                                                                  >  2:467593/1‑93 (MQ=255)
                         cGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGa                                                                >  2:3630302/1‑93 (MQ=255)
                         cGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGa                                                                >  1:843635/1‑93 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               <  1:4920253/93‑1 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               >  2:2155981/1‑93 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               >  2:823921/1‑93 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               >  2:1034503/1‑93 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               <  2:6135022/93‑1 (MQ=255)
                          gCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAt                                                               >  1:1548199/1‑93 (MQ=255)
                             gACGCAAAAGCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaa                                                            <  1:1353633/93‑1 (MQ=255)
                             gACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaa                                                            >  1:2229425/1‑93 (MQ=255)
                              aCGCCAAAGCCGAATAAGGCGCGGCTGCGTTTTCGTCTCGGTATGCTGGTGTTTTTCGGCGTGCTGGTCTGGGCGTTGCTCACAGCGATGaac                                                           <  2:3585051/93‑1 (MQ=255)
                              aCGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaac                                                           >  2:3285598/1‑93 (MQ=255)
                              aCGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaac                                                           >  1:1304075/1‑93 (MQ=255)
                              aCGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaac                                                           <  1:4284131/93‑1 (MQ=255)
                               cGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaacc                                                          <  1:1723692/93‑1 (MQ=255)
                                gCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaacca                                                         <  1:6309773/93‑1 (MQ=255)
                                gCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaacca                                                         >  1:92486/1‑93 (MQ=255)
                                gCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaacca                                                         >  2:331159/1‑93 (MQ=255)
                                  aaaaaCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGaaccaac                                                       <  1:1892305/93‑1 (MQ=255)
                                    aaaCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAAccc                                                     <  2:1537400/93‑1 (MQ=255)
                                    aaaCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAAccc                                                     <  1:6478735/93‑1 (MQ=255)
                                     aaCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCa                                                    >  1:2012581/1‑93 (MQ=255)
                                     aaCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCa                                                    >  2:3466735/1‑93 (MQ=255)
                                      aCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCaa                                                   >  1:10034/1‑93 (MQ=255)
                                      aCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCaa                                                   >  2:1099518/1‑93 (MQ=255)
                                      aCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCaa                                                   >  1:3303155/1‑93 (MQ=255)
                                      aCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCaa                                                   >  1:3608404/1‑93 (MQ=255)
                                       ccGGATCGGGCCCGGCGCCGTTTTCGTCTCGGGAGGCTGGCCTTTTTCGGGGTGCTGGGCTGGGGCCGGCTCCCAGGGATGAACAACCCCaaa                                                  >  2:2451996/1‑93 (MQ=255)
                                       ccGGATCAGGCGCGGCGTCGTTTTCGTCTCGTGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCaaa                                                  <  1:3200886/93‑1 (MQ=255)
                                       ccGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGAGATGAACCAACCCaaa                                                  <  1:1516857/93‑1 (MQ=255)
                                        cGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAAc                                                 <  2:534845/93‑1 (MQ=255)
                                          gATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTg                                               >  2:2855174/1‑93 (MQ=255)
                                          gATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTg                                               <  2:2635681/93‑1 (MQ=255)
                                          gATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTg                                               <  2:5446446/93‑1 (MQ=255)
                                            tCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTggg                                             <  2:1703567/93‑1 (MQ=255)
                                              aGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGCGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGc                                           <  1:4551411/93‑1 (MQ=255)
                                               ggCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGCACCAACCCAAACTGGGGcg                                          >  2:6451311/1‑92 (MQ=255)
                                                gcgcGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTg                                         <  1:1415930/93‑1 (MQ=255)
                                                     gcgTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAAt                                    >  1:2269143/1‑93 (MQ=255)
                                                      cgtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATg                                   <  2:5179245/93‑1 (MQ=255)
                                                       gtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTGACAGCGATGAACCAAACCAAACTGGGGCTGCCacgtt                                  >  1:4260514/1‑89 (MQ=255)
                                                       gtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAGTGc                                  >  2:2738756/1‑93 (MQ=255)
                                                       gtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGc                                  >  2:5052397/1‑93 (MQ=255)
                                                       gtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGc                                  <  2:597578/93‑1 (MQ=255)
                                                       gtcgtTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGc                                  <  2:1652345/93‑1 (MQ=255)
                                                           ttttCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGtt                              <  1:5323492/93‑1 (MQ=255)
                                                           ttttCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGtt                              <  1:248785/93‑1 (MQ=255)
                                                            tttCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGttt                             >  2:6225852/1‑93 (MQ=255)
                                                            tttCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGttt                             <  2:5682887/93‑1 (MQ=255)
                                                             ttCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTg                            <  2:6286902/93‑1 (MQ=255)
                                                             ttCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTg                            <  1:6022774/93‑1 (MQ=255)
                                                             tgcGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTg                            <  1:5149221/91‑1 (MQ=255)
                                                               cGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGc                          <  2:43296/93‑1 (MQ=255)
                                                                gTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCg                         <  1:2904068/93‑1 (MQ=255)
                                                                   tcGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCg                      >  2:2300747/1‑93 (MQ=255)
                                                                    cGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCgg                     >  1:1029552/1‑93 (MQ=255)
                                                                    cGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCgg                     <  2:1771234/93‑1 (MQ=255)
                                                                       gATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCtt                  <  1:4831961/93‑1 (MQ=255)
                                                                       gATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCtt                  >  2:2822019/1‑93 (MQ=255)
                                                                       gATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCtt                  <  2:5266742/93‑1 (MQ=255)
                                                                       gATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCtt                  >  1:3327159/1‑93 (MQ=255)
                                                                         tGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTg                <  2:5009807/93‑1 (MQ=255)
                                                                         tGCTGGTCTTGTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTg                <  2:439838/93‑1 (MQ=255)
                                                                          gCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTgg               >  1:3891516/1‑93 (MQ=255)
                                                                          gCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTgg               <  1:3122955/93‑1 (MQ=255)
                                                                           cTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGt              <  1:5151818/93‑1 (MQ=255)
                                                                            tGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGtt             >  1:270352/1‑93 (MQ=255)
                                                                            tGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGtt             >  1:5179637/1‑93 (MQ=255)
                                                                            tGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGtt             >  1:6189578/1‑93 (MQ=255)
                                                                              gTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTa           <  1:692763/93‑1 (MQ=255)
                                                                                  ttttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCACCCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGa       <  2:5551924/93‑1 (MQ=255)
                                                                                  ttttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGa       >  2:6103932/1‑93 (MQ=255)
                                                                                   tttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGAt      <  1:2071367/93‑1 (MQ=255)
                                                                                    ttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGAtt     >  1:4423399/1‑93 (MQ=255)
                                                                                    ttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGAtt     <  2:233650/93‑1 (MQ=255)
                                                                                    ttCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGAtt     <  1:584537/93‑1 (MQ=255)
                                                                                       ggCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCATCCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGaa  <  1:2366118/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAA  >  NC_000913/2006828‑2007007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACG  >  NC_000913/2006826‑2007009
                                                                                            |                                                                                           
AAATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGT                                                                                            >  SRR4302537.5821091/1‑94 (MQ=60)
  ATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGC                                                                                          <  SRR4302537.3495049/94‑1 (MQ=60)
  ATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTCTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGC                                                                                          >  SRR4302537.2041147/1‑94 (MQ=60)
   TGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCT                                                                                         >  SRR4302537.4482202/1‑94 (MQ=60)
    GCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTG                                                                                        <  SRR4302537.1477766/94‑1 (MQ=60)
      AGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGG                                                                                      <  SRR4302537.6439739/94‑1 (MQ=60)
      AGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGG                                                                                      >  SRR4302537.842425/1‑94 (MQ=60)
        AAAGTTTCTGCCGCCTCACCGCTGCAGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGCTGCTGGTCTTTTTCGGCATGCTGGGCT                                                                                    >  SRR4302537.2794432/1‑94 (MQ=60)
        AAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCT                                                                                    >  SRR4302537.6006998/1‑94 (MQ=60)
         AAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTG                                                                                   >  SRR4302537.4485617/1‑94 (MQ=60)
           GTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGG                                                                                 <  SRR4302537.908333/94‑1 (MQ=60)
              TCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGC                                                                              >  SRR4302537.6314699/1‑94 (MQ=60)
               CTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCT                                                                             <  SRR4302537.943063/94‑1 (MQ=60)
               CTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCT                                                                             >  SRR4302537.3222169/1‑94 (MQ=60)
               CTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCT                                                                             >  SRR4302537.835512/1‑94 (MQ=60)
               CTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCT                                                                             <  SRR4302537.1321232/94‑1 (MQ=60)
               CTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGGTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCG                                                                             >  SRR4302537.531193/1‑94 (MQ=60)
                TGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTG                                                                            >  SRR4302537.1901597/1‑94 (MQ=60)
                   CGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTC                                                                         >  SRR4302537.6065187/1‑94 (MQ=60)
                        CACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGC                                                                    >  SRR4302537.4268906/1‑94 (MQ=60)
                        CACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGC                                                                    >  SRR4302537.6444761/1‑94 (MQ=60)
                          CCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGA                                                                  >  SRR4302537.849414/1‑94 (MQ=60)
                           CGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGAT                                                                 >  SRR4302537.1559004/1‑94 (MQ=60)
                            GCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATG                                                                <  SRR4302537.4954195/94‑1 (MQ=60)
                             CTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGA                                                               <  SRR4302537.810381/94‑1 (MQ=60)
                              TGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAA                                                              >  SRR4302537.4876021/1‑94 (MQ=60)
                              TGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAA                                                              >  SRR4302537.3855627/1‑94 (MQ=60)
                              TGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAA                                                              >  SRR4302537.2245145/1‑94 (MQ=60)
                               GACGCAAAAGCCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAAC                                                             <  SRR4302537.1363063/94‑1 (MQ=60)
                               GACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAAC                                                             >  SRR4302537.1313142/1‑94 (MQ=60)
                                ACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACC                                                            <  SRR4302537.4313912/94‑1 (MQ=60)
                                 CGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCA                                                           >  SRR4302537.93155/1‑94 (MQ=60)
                                 CGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCA                                                           <  SRR4302537.1735735/94‑1 (MQ=60)
                                  GCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAA                                                          <  SRR4302537.6352973/94‑1 (MQ=60)
                                    AAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACC                                                        <  SRR4302537.1905458/94‑1 (MQ=60)
                                      AAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCA                                                      <  SRR4302537.6522771/94‑1 (MQ=60)
                                      AAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCA                                                      >  SRR4302537.2026609/1‑94 (MQ=60)
                                       AACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAA                                                     >  SRR4302537.10109/1‑94 (MQ=60)
                                       AACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAA                                                     >  SRR4302537.3633840/1‑94 (MQ=60)
                                       AACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAA                                                     >  SRR4302537.3326509/1‑94 (MQ=60)
                                       AACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAA                                                     <  SRR4302537.4415837/94‑1 (MQ=60)
                                        ACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAA                                                    >  SRR4302537.4566445/1‑94 (MQ=60)
                                         CCGGATCAGGCGCGGCGTCGTTTTCGTCTCGTGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAAC                                                   <  SRR4302537.3223390/94‑1 (MQ=60)
                                         CCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAAC                                                   >  SRR4302537.3330102/1‑94 (MQ=60)
                                         CCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGAGATGAACCAACCCAAAC                                                   <  SRR4302537.1527457/94‑1 (MQ=60)
                                          CGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACT                                                  <  SRR4302537.3294803/94‑1 (MQ=60)
                                            GATCAGACGCGGCGCCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCGGGGCGATCCTCACAGCGATGAACCAACCCAAACTGG                                                <  SRR4302537.2620624/94‑1 (MQ=60)
                                             ATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGG                                               <  SRR4302537.4701366/94‑1 (MQ=60)
                                                AGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGCGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCT                                            <  SRR4302537.4582906/94‑1 (MQ=60)
                                                  GCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGG                                          <  SRR4302537.1425784/94‑1 (MQ=60)
                                                   CGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGC                                         >  SRR4302537.6386222/1‑94 (MQ=60)
                                                      GGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAAT                                      >  SRR4302537.3395522/1‑94 (MQ=60)
                                                      GGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAAT                                      >  SRR4302537.6329743/1‑94 (MQ=60)
                                                      GGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAAT                                      >  SRR4302537.2285170/1‑94 (MQ=60)
                                                      GGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAAT                                      <  SRR4302537.1630217/94‑1 (MQ=60)
                                                       GCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATG                                     <  SRR4302537.1943098/94‑1 (MQ=60)
                                                        CGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTGACAGCGATGAACCAAACCAAACTGGGGCTGccacgtt                                    >  SRR4302537.4290119/1‑87 (MQ=60)
                                                        CGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCTCAGCGATGAACCAACCCAAACTGGGGCTGGCAATGC                                    <  SRR4302537.4483842/94‑1 (MQ=60)
                                                         GTCGTTTTCGTCTCGGGATGCTGGTCTTCTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCT                                   <  SRR4302537.6261764/94‑1 (MQ=60)
                                                           CGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGT                                 >  SRR4302537.5097923/1‑94 (MQ=60)
                                                           CGTTTTCGTCTCGGGATGCTGGTCTNTTTCGGCGTNCTGGGCTGGGCGCTGNTCACAGNGATGNACNAAnnnnnnctnngncnnnnnnnncnnt                                 >  SRR4302537.2627868/1‑69 (MQ=60)
                                                             TTTTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTT                               <  SRR4302537.5360027/94‑1 (MQ=60)
                                                             TTTTCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTT                               <  SRR4302537.250557/94‑1 (MQ=60)
                                                               TTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGG                             >  SRR4302537.3006280/1‑94 (MQ=60)
                                                               TTCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGG                             <  SRR4302537.6064153/94‑1 (MQ=60)
                                                               TGCGTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGG                             <  SRR4302537.5184708/94‑1 (MQ=60)
                                                                  GTCTCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGT                          <  SRR4302537.2924471/94‑1 (MQ=60)
                                                                    CTAGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCG                        >  SRR4302537.5990870/1‑94 (MQ=60)
                                                                     TCGGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGG                       >  SRR4302537.1036643/1‑94 (MQ=60)
                                                                       GGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCT                     >  SRR4302537.2491567/1‑94 (MQ=60)
                                                                       GGGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCT                     >  SRR4302537.1372871/1‑94 (MQ=60)
                                                                        GGATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTT                    >  SRR4302537.3350703/1‑94 (MQ=60)
                                                                         GATGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTT                   <  SRR4302537.4865328/94‑1 (MQ=60)
                                                                           TGCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGG                 >  SRR4302537.3918729/1‑94 (MQ=60)
                                                                            GCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGT                <  SRR4302537.3144803/94‑1 (MQ=60)
                                                                            GCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGT                >  SRR4302537.1201149/1‑94 (MQ=60)
                                                                            GCTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGT                <  SRR4302537.2789959/94‑1 (MQ=60)
                                                                             CTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTT               >  SRR4302537.272255/1‑94 (MQ=60)
                                                                             CTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTT               >  SRR4302537.2119851/1‑94 (MQ=60)
                                                                             CTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTT               >  SRR4302537.6232221/1‑94 (MQ=60)
                                                                             CTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTT               >  SRR4302537.5215281/1‑94 (MQ=60)
                                                                             CTGGTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTT               <  SRR4302537.5187319/94‑1 (MQ=60)
                                                                                GTCTTTTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTAC            <  SRR4302537.697510/94‑1 (MQ=60)
                                                                                   TTTTTCGGCGTGCGGGGCTGGGCGCTGCTCACAGCAATGAACCAACCCAAACTGGGGCTGGAAATGCGGTTTGGCGTCGGCTTTGGTTTACTGA         <  SRR4302537.432028/94‑1 (MQ=60)
                                                                                     TTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATT       <  SRR4302537.2085956/94‑1 (MQ=60)
                                                                                     TTTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATT       >  SRR4302537.4453949/1‑94 (MQ=60)
                                                                                     TGTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATT       <  SRR4302537.2355918/94‑1 (MQ=60)
                                                                                      TTCGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTG      <  SRR4302537.588528/94‑1 (MQ=60)
                                                                                      TTCGGCGTGCTGGGCTGCGCGATGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTG      <  SRR4302537.5207862/94‑1 (MQ=60)
                                                                                        CGGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCAAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAA    <  SRR4302537.4305887/94‑1 (MQ=60)
                                                                                         GGCGTGCTGGGCTGGGCGCTTCTCACAGCGATGAACCAACCCAAACTGGGGCCGGCAATGCTGTTTGGCGTCTGCTTTGGTTTACTGATTGAAC   >  SRR4302537.6386008/1‑94 (MQ=60)
                                                                                         GGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCATCCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAAC   <  SRR4302537.2382799/94‑1 (MQ=60)
                                                                                         GGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAAC   <  SRR4302537.5468644/94‑1 (MQ=60)
                                                                                         GGCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAAC   >  SRR4302537.1122490/1‑94 (MQ=60)
                                                                                          GCGTGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACG  <  SRR4302537.6412404/94‑1 (MQ=60)
                                                                                            |                                                                                           
AAATGCAGAAAGTTTCTGCCGCCTCACCGCTGACGCAAAAACCGGATCAGGCGCGGCGTCGTTTTCGTCTCGGGATGCTGGTCTTTTTCGGCATGCTGGGCTGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACG  >  NC_000913/2006826‑2007009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑