Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,393,759 |
G→A |
A53V (GCG→GTG) |
nuoJ ← |
NADH dehydrogenase I chain J |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,393,759 | 0 | G | A | 98.0%
| 708.1
/ 0.5
| 201 | A53V (GCG→GTG) | nuoJ | NADH dehydrogenase I chain J |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base A (101/96); total (104/97) |
| Fisher's exact test for biased strand distribution p-value = 6.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.38e-02 |
Only 100 of 210 total aligned reads displayed.
TGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATT > NC_000913/2393669‑2393847
|
tGTTCGATTTCTGAACCGCGCAGGTTGAGCATCATCAGCACGAACACGAACAGCACCATAATGGCACCCGCGGAGACGATAATTTCCAGcaca < 2:2623025/93‑1 (MQ=255)
tGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGcaca > 1:1922236/1‑93 (MQ=255)
gTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCacac > 1:2787246/1‑93 (MQ=255)
ttCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACAcc > 1:1595835/1‑93 (MQ=255)
ttCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACAcc < 2:2666129/93‑1 (MQ=255)
ttCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACAcc > 1:2418748/1‑93 (MQ=255)
cGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCgg < 1:1719395/93‑1 (MQ=255)
gATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGc > 1:2584300/1‑93 (MQ=255)
aTTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCg < 2:1273609/93‑1 (MQ=255)
tCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAg > 1:422168/1‑93 (MQ=255)
tGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTa > 1:4816558/1‑93 (MQ=255)
tGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTa > 2:6109861/1‑93 (MQ=255)
gAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTaa > 1:530882/1‑93 (MQ=255)
aCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAgc > 2:4098920/1‑93 (MQ=255)
aCCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAgc < 2:1531167/93‑1 (MQ=255)
ccGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAgcg < 1:2460205/93‑1 (MQ=255)
cGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAgcgc > 2:4971690/1‑93 (MQ=255)
ccAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCa < 1:4006705/93‑1 (MQ=255)
ccAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCa < 1:3949352/93‑1 (MQ=255)
ccAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCa > 2:1183501/1‑93 (MQ=255)
cAGGTTGAGCATCATCGCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAg < 1:371042/93‑1 (MQ=255)
aGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGt < 2:3912714/93‑1 (MQ=255)
aGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGt < 2:5460386/93‑1 (MQ=255)
ggTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTg > 2:6460596/1‑93 (MQ=255)
ggTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTg < 2:2722135/93‑1 (MQ=255)
ggTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGAAGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTg > 1:882035/1‑93 (MQ=255)
gTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTga < 1:5921375/93‑1 (MQ=255)
gTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTga > 2:5910771/1‑93 (MQ=255)
gTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTga > 1:4740726/1‑93 (MQ=255)
ttGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTgag < 1:1783131/93‑1 (MQ=255)
tGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTgaga < 1:4391560/93‑1 (MQ=255)
gAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGagaa < 2:1988304/93‑1 (MQ=255)
atcatcACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAac < 1:5622552/93‑1 (MQ=255)
atcatcACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAac > 2:4757665/1‑93 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca > 2:4388728/1‑93 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca < 2:5696273/93‑1 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca > 1:6075435/1‑93 (MQ=255)
tcatcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAaca < 1:1669994/93‑1 (MQ=255)
catcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAacac < 1:2845066/93‑1 (MQ=255)
atcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAcc < 2:1443751/93‑1 (MQ=255)
atcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAcc > 2:4506174/1‑93 (MQ=255)
atcaCCACGAACACGAACAGCACCATAACGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAcc < 1:2621212/93‑1 (MQ=255)
tcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAccc < 1:1250888/93‑1 (MQ=255)
tcaCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAccc > 1:2899843/1‑93 (MQ=255)
accacGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCg > 1:5026291/1‑93 (MQ=255)
cgaacacgaacaGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGaaa > 2:3553011/1‑93 (MQ=255)
cgaacacgaacaGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGaaa > 1:5800182/1‑93 (MQ=255)
cgaacacgaacaGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGaaa < 1:5397559/93‑1 (MQ=255)
gaacacgaacaGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAt < 1:5486682/93‑1 (MQ=255)
gaacaGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcag < 2:5804322/93‑1 (MQ=255)
caGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagcag < 2:2216297/93‑1 (MQ=255)
caGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCcagcag < 2:1784320/93‑1 (MQ=255)
aGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCagcagc > 1:2297584/1‑93 (MQ=255)
aGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCagcagc > 1:114532/1‑93 (MQ=255)
ccATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGaaa < 2:4242318/93‑1 (MQ=255)
aTAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaata < 2:4893483/93‑1 (MQ=255)
aTAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaata > 2:801267/1‑93 (MQ=255)
tAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataa < 2:1722048/93‑1 (MQ=255)
aaTGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataat < 1:6120320/93‑1 (MQ=255)
aaTGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAaataat < 2:4020249/93‑1 (MQ=255)
aTGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATc < 2:2166839/93‑1 (MQ=255)
aTGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATc < 1:597171/93‑1 (MQ=255)
aTGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAAAAATc > 1:4534010/1‑93 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa > 2:687705/1‑93 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa > 1:4258052/1‑93 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa > 1:4619646/1‑93 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa > 1:4944505/1‑93 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa < 2:749946/93‑1 (MQ=255)
tGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCa < 2:1928250/93‑1 (MQ=255)
aCCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTa > 2:1038006/1‑93 (MQ=255)
cccGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAc < 1:6047500/93‑1 (MQ=255)
ccGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAca > 1:3254326/1‑93 (MQ=255)
cgTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAcagca < 1:4497884/93‑1 (MQ=255)
gTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAcagcag > 2:2945114/1‑93 (MQ=255)
gTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAcagcag < 2:5654063/93‑1 (MQ=255)
tAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCGAGTTAGAAGAACCCCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGt < 2:79019/93‑1 (MQ=255)
tAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGt < 2:2518777/93‑1 (MQ=255)
gaGACGATAATTACCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGt < 1:5996641/92‑1 (MQ=255)
gACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGc < 2:3570317/93‑1 (MQ=255)
gACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGc < 1:3041810/93‑1 (MQ=255)
gACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGc > 2:5206356/1‑93 (MQ=255)
aCGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCg > 1:3778305/1‑93 (MQ=255)
gATAATTTCCATCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACATCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCgtg > 2:3276248/1‑93 (MQ=255)
tAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTa > 1:3058104/1‑93 (MQ=255)
tAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTa > 1:1385362/1‑93 (MQ=255)
tAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTa > 2:5108035/1‑93 (MQ=255)
tAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTa > 2:3867942/1‑93 (MQ=255)
tAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTa > 1:6280305/1‑93 (MQ=255)
aaTTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTAc > 2:3518426/1‑93 (MQ=255)
aTTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGAACAGCAGTGCGTGTAcc > 1:3985904/1‑93 (MQ=255)
aTTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTAcc < 1:1649464/93‑1 (MQ=255)
tttCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCg > 2:5128726/1‑93 (MQ=255)
tttCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCg < 1:4676897/93‑1 (MQ=255)
tCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGa < 2:4618262/93‑1 (MQ=255)
tCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGa < 2:2821266/93‑1 (MQ=255)
ccAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAt < 1:5142528/93‑1 (MQ=255)
ccAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAt < 1:534956/93‑1 (MQ=255)
ccAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAt > 2:6172305/1‑93 (MQ=255)
cAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAtt > 1:2699340/1‑93 (MQ=255)
cAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAtt < 1:646323/93‑1 (MQ=255)
|
TGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATT > NC_000913/2393669‑2393847
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT > NC_000913/2393667‑2393852
|
CCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCAC < SRR4302537.563600/94‑1 (MQ=60)
CTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACA > SRR4302537.1935585/1‑94 (MQ=60)
TGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACAC < SRR4302537.238290/94‑1 (MQ=60)
TGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACAC > SRR4302537.2806737/1‑94 (MQ=60)
GTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACC > SRR4302537.2435793/1‑94 (MQ=60)
GTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACC > SRR4302537.1606985/1‑94 (MQ=60)
TTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCG < SRR4302537.2401441/94‑1 (MQ=60)
CGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGC < SRR4302537.1731409/94‑1 (MQ=60)
CGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGC > SRR4302537.2602389/1‑94 (MQ=60)
CGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGC > SRR4302537.660921/1‑94 (MQ=60)
GATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCG > SRR4302537.6497613/1‑94 (MQ=60)
TTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAA < SRR4302537.402799/94‑1 (MQ=60)
TTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAG > SRR4302537.425093/1‑94 (MQ=60)
TTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAG < SRR4302537.421040/94‑1 (MQ=60)
TCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGT > SRR4302537.6040362/1‑94 (MQ=60)
CTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTA > SRR4302537.4849811/1‑94 (MQ=60)
TGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAA > SRR4302537.534521/1‑94 (MQ=60)
ACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCG < SRR4302537.446395/94‑1 (MQ=60)
CCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGC < SRR4302537.2477506/94‑1 (MQ=60)
CGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCC > SRR4302537.5405019/1‑94 (MQ=60)
GCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCC > SRR4302537.5567312/1‑94 (MQ=60)
CCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCA > SRR4302537.2200059/1‑94 (MQ=60)
CCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCA > SRR4302537.2622222/1‑94 (MQ=60)
CCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCA > SRR4302537.3083645/1‑94 (MQ=60)
CCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGAGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCA > SRR4302537.4979660/1‑94 (MQ=60)
CCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAG < SRR4302537.3976975/94‑1 (MQ=60)
CCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAG < SRR4302537.4034746/94‑1 (MQ=60)
CAGGTTGAGCATCATCGCCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGT < SRR4302537.373615/94‑1 (MQ=60)
CAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGT < SRR4302537.1813371/94‑1 (MQ=60)
CAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGT < SRR4302537.889346/94‑1 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTG < SRR4302537.5347922/94‑1 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTG > SRR4302537.3797841/1‑94 (MQ=60)
AGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGAAGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTG > SRR4302537.888102/1‑94 (MQ=60)
GGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGA > SRR4302537.4773491/1‑94 (MQ=60)
GTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAG < SRR4302537.4644346/94‑1 (MQ=60)
GTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAG < SRR4302537.5962006/94‑1 (MQ=60)
TTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGA < SRR4302537.1795566/94‑1 (MQ=60)
TTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGA > SRR4302537.1291104/1‑94 (MQ=60)
TGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAA > SRR4302537.6249997/1‑94 (MQ=60)
TGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAA < SRR4302537.4421835/94‑1 (MQ=60)
GAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAG < SRR4302537.5422409/94‑1 (MQ=60)
AGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGCAGAAGTATGCGCCCTGTGAGAAGA > SRR4302537.5474341/1‑94 (MQ=60)
ATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACA < SRR4302537.5660991/94‑1 (MQ=60)
ATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACA < SRR4302537.1709634/94‑1 (MQ=60)
ATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACA > SRR4302537.6117187/1‑94 (MQ=60)
TCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAC < SRR4302537.1681692/94‑1 (MQ=60)
TCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACAC < SRR4302537.6093516/94‑1 (MQ=60)
CATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACC < SRR4302537.2864982/94‑1 (MQ=60)
ATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCC > SRR4302537.2920218/1‑94 (MQ=60)
ATCACCACGAACACGAACAGCACCATAACGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCC < SRR4302537.2639575/94‑1 (MQ=60)
TCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCC < SRR4302537.1259596/94‑1 (MQ=60)
CACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCCGTGAGAAGAACACCCCG > SRR4302537.1617655/1‑94 (MQ=60)
CACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCG > SRR4302537.2889867/1‑94 (MQ=60)
CACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCG > SRR4302537.5060905/1‑94 (MQ=60)
CCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGA > SRR4302537.2986184/1‑94 (MQ=60)
CCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGA > SRR4302537.3620226/1‑94 (MQ=60)
CACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAA > SRR4302537.4778393/1‑94 (MQ=60)
ACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAA > SRR4302537.5839946/1‑94 (MQ=60)
ACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACACCGGAAA > SRR4302537.2475319/1‑94 (MQ=60)
CGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAT < SRR4302537.3962123/94‑1 (MQ=60)
CGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAT < SRR4302537.5136527/94‑1 (MQ=60)
CGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAT < SRR4302537.5434409/94‑1 (MQ=60)
CGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAAT > SRR4302537.5698755/1‑94 (MQ=60)
GAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATC < SRR4302537.5524134/94‑1 (MQ=60)
AACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCG > SRR4302537.6030270/1‑94 (MQ=60)
AACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCG < SRR4302537.1159529/94‑1 (MQ=60)
GAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGC < SRR4302537.1784601/94‑1 (MQ=60)
CAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGC > SRR4302537.2313800/1‑94 (MQ=60)
CAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGC > SRR4302537.115366/1‑94 (MQ=60)
AGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCG < SRR4302537.2650867/94‑1 (MQ=60)
AGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCG > SRR4302537.2719848/1‑94 (MQ=60)
ACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAA > SRR4302537.545942/1‑94 (MQ=60)
ATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA > SRR4302537.6160378/1‑94 (MQ=60)
ATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA < SRR4302537.3245109/94‑1 (MQ=60)
ATAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAA > SRR4302537.154446/1‑94 (MQ=60)
TAATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAAT > SRR4302537.4700812/1‑94 (MQ=60)
AATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATC < SRR4302537.6162389/94‑1 (MQ=60)
AATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATC > SRR4302537.4366001/1‑94 (MQ=60)
AATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATC > SRR4302537.624854/1‑94 (MQ=60)
AATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAAAAATC > SRR4302537.4565402/1‑94 (MQ=60)
ATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCA > SRR4302537.4651633/1‑94 (MQ=60)
ATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCA < SRR4302537.2564867/94‑1 (MQ=60)
ATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCA < SRR4302537.601258/94‑1 (MQ=60)
ATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCA > SRR4302537.4978602/1‑94 (MQ=60)
ATGGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCA > SRR4302537.4287642/1‑94 (MQ=60)
GGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGG > SRR4302537.2931058/1‑94 (MQ=60)
GGCACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGG < SRR4302537.5989901/94‑1 (MQ=60)
ACCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTAC > SRR4302537.1663602/1‑94 (MQ=60)
CCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACA > SRR4302537.3277273/1‑94 (MQ=60)
CCCGCGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACA < SRR4302537.6089030/94‑1 (MQ=60)
CGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAG > SRR4302537.4530448/1‑94 (MQ=60)
CGTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAG < SRR4302537.4528996/94‑1 (MQ=60)
GTAGACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGT < SRR4302537.5189515/94‑1 (MQ=60)
GAGACGATAATTACCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTG < SRR4302537.6037833/94‑1 (MQ=60)
GACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCG > SRR4302537.3804837/1‑94 (MQ=60)
GACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCG < SRR4302537.3063005/94‑1 (MQ=60)
ACGATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGT < SRR4302537.4263535/94‑1 (MQ=60)
CGATAATTGCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCGCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTG < SRR4302537.5951729/94‑1 (MQ=60)
ATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTA > SRR4302537.1395026/1‑94 (MQ=60)
ATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTA > SRR4302537.3079411/1‑94 (MQ=60)
ATAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTA > SRR4302537.6323382/1‑94 (MQ=60)
TAATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTAC < SRR4302537.2833456/94‑1 (MQ=60)
AATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACC > SRR4302537.4013813/1‑94 (MQ=60)
AATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGAACAGCAGTGCGTGTACC > SRR4302537.4013814/1‑94 (MQ=60)
ATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCG < SRR4302537.4962411/94‑1 (MQ=60)
ATTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCG < SRR4302537.1661037/94‑1 (MQ=60)
TTTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGG < SRR4302537.4709252/94‑1 (MQ=60)
TTCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGA > SRR4302537.4539857/1‑94 (MQ=60)
TCCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGAT > SRR4302537.3079316/1‑94 (MQ=60)
CCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATT > SRR4302537.2718196/1‑94 (MQ=60)
CCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATT < SRR4302537.538627/94‑1 (MQ=60)
CCAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATT < SRR4302537.5177964/94‑1 (MQ=60)
CAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACCCCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTG < SRR4302537.4715579/94‑1 (MQ=60)
CAGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTG < SRR4302537.650727/94‑1 (MQ=60)
AGCACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGG > SRR4302537.5188020/1‑94 (MQ=60)
ACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT < SRR4302537.2832147/94‑1 (MQ=60)
ACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT > SRR4302537.3481864/1‑94 (MQ=60)
ACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT < SRR4302537.6490317/94‑1 (MQ=60)
ACACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT < SRR4302537.4719687/94‑1 (MQ=60)
|
CCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAACAGCACCATAATGGCACCCGCGTAGACGATAATTTCCAGCGCACCGGCGAAGTAAGCGCCCAGTGAGAAGAACACCCCGGAAATCGCCAGCAGCGAAATAATCAGGTACAGCAGTGCGTGTACCGGATTGGTAT > NC_000913/2393667‑2393852
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
