Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,521,900 T→G T36P (ACC→CCC)  xapB ← xanthosine permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,521,9000TG96.5% 767.8 / 6.3 227T36P (ACC→CCC) xapBxanthosine permease
Reads supporting (aligned to +/- strand):  ref base T (5/3);  new base G (104/115);  total (109/118)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 235 total aligned reads displayed.

CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCGCA  >  NC_000913/2521811‑2521992
                                                                                         |                                                                                            
 cATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGaaa                                                                                          <  1:2426252/93‑1 (MQ=255)
  aTTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAt                                                                                         >  1:477548/1‑93 (MQ=255)
   tttGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATg                                                                                        >  1:5135277/1‑93 (MQ=255)
   tttGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATg                                                                                        >  1:85910/1‑93 (MQ=255)
     tGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGaa                                                                                      >  2:113260/1‑93 (MQ=255)
     tGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGaa                                                                                      >  1:2127961/1‑93 (MQ=255)
      gTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAag                                                                                     >  2:242844/1‑93 (MQ=255)
       tCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAaga                                                                                    >  2:5970068/1‑93 (MQ=255)
          gCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTa                                                                                 <  2:5158555/93‑1 (MQ=255)
             atgatCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTa                                                                              <  2:4174941/93‑1 (MQ=255)
              tgatCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTaa                                                                             >  2:1175243/1‑93 (MQ=255)
               gatCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAAt                                                                            >  1:365674/1‑93 (MQ=255)
                atCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTTTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATc                                                                           >  2:4961889/1‑93 (MQ=255)
                  ccccATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCAt                                                                         <  1:2943673/93‑1 (MQ=255)
                   cccATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATg                                                                        <  1:4508696/93‑1 (MQ=255)
                   cccATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATg                                                                        >  1:1398835/1‑93 (MQ=255)
                   cccATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATg                                                                        <  2:6271114/93‑1 (MQ=255)
                      aTTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTaa                                                                     <  1:6366775/93‑1 (MQ=255)
                       ttATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAag                                                                    <  1:2374967/93‑1 (MQ=255)
                       ttATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAag                                                                    >  1:2842009/1‑93 (MQ=255)
                       ttATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAag                                                                    >  2:1374000/1‑93 (MQ=255)
                       ttATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAag                                                                    <  1:5111355/93‑1 (MQ=255)
                       ttATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAag                                                                    <  1:4701665/93‑1 (MQ=255)
                        tataCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAaga                                                                   <  1:3334854/93‑1 (MQ=255)
                        tataCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAaga                                                                   <  2:461976/93‑1 (MQ=255)
                         ataCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAagag                                                                  <  1:1043607/93‑1 (MQ=255)
                          taCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGc                                                                 >  2:2536857/1‑93 (MQ=255)
                          taCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGc                                                                 <  1:790337/93‑1 (MQ=255)
                           aCCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGcc                                                                <  1:1390997/93‑1 (MQ=255)
                            ccAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCg                                                               >  1:128744/1‑93 (MQ=255)
                             cAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGa                                                              >  2:4495889/1‑93 (MQ=255)
                              aGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAg                                                             >  1:6163129/1‑93 (MQ=255)
                              aGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAg                                                             >  2:3767906/1‑93 (MQ=255)
                                gCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAggg                                                           >  1:4174054/1‑93 (MQ=255)
                                 cATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGCATTAATCATGTAAGAGACGAGGGt                                                          >  1:3599287/1‑93 (MQ=255)
                                   taataaTCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTaa                                                        <  2:4251808/93‑1 (MQ=255)
                                    aataatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAc                                                       <  1:3540740/93‑1 (MQ=255)
                                     ataatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAcc                                                      <  2:5281218/93‑1 (MQ=255)
                                      taatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCTCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAcca                                                     >  2:676579/1‑93 (MQ=255)
                                      taatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAcca                                                     <  2:4029050/93‑1 (MQ=255)
                                      taatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAcca                                                     >  2:2076786/1‑93 (MQ=255)
                                      taatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAcca                                                     <  1:1551768/93‑1 (MQ=255)
                                       aatCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAccag                                                    >  2:193787/1‑93 (MQ=255)
                                         tCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAccagcc                                                  <  1:5066812/93‑1 (MQ=255)
                                         tCGCGGCGATCCATTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAccagcc                                                  >  1:3645437/1‑93 (MQ=255)
                                           gcggcgATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAAccagccag                                                >  2:3844637/1‑93 (MQ=255)
                                            cggcgATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACcagccagc                                               <  2:1340746/93‑1 (MQ=255)
                                            cggcgATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACcagccagc                                               <  2:2254656/93‑1 (MQ=255)
                                             ggcgATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCt                                              >  1:1457959/1‑93 (MQ=255)
                                               cgATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTcc                                            >  2:3428439/1‑93 (MQ=255)
                                                 aTCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTcccc                                          >  2:3162831/1‑93 (MQ=255)
                                                 aTCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTcccc                                          >  1:2312031/1‑93 (MQ=255)
                                                 aTCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTcccc                                          >  2:837958/1‑93 (MQ=255)
                                                 aTCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTcccc                                          >  1:6096794/1‑93 (MQ=255)
                                                  tCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTccccc                                         >  2:3865711/1‑93 (MQ=255)
                                                  tCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTccccc                                         <  2:2799900/93‑1 (MQ=255)
                                                   cccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCa                                        >  2:1458787/1‑93 (MQ=255)
                                                   cccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCa                                        >  2:3741381/1‑93 (MQ=255)
                                                   cccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCa                                        <  2:4720963/93‑1 (MQ=255)
                                                   cccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCa                                        <  2:433934/93‑1 (MQ=255)
                                                    ccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAg                                       <  2:3651862/93‑1 (MQ=255)
                                                    ccTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAg                                       >  1:5538521/1‑93 (MQ=255)
                                                       ttGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATa                                    <  1:4932265/93‑1 (MQ=255)
                                                        tGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATaa                                   <  2:5697894/93‑1 (MQ=255)
                                                         ggAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATaaa                                  <  1:5636975/93‑1 (MQ=255)
                                                          gAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATaaaa                                 <  1:5756446/93‑1 (MQ=255)
                                                            aCTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAata                               <  1:3082816/93‑1 (MQ=255)
                                                            aCTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAata                               <  1:1001771/93‑1 (MQ=255)
                                                             cTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAatat                              >  1:6470857/1‑93 (MQ=255)
                                                              tGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAtt                             >  1:634787/1‑93 (MQ=255)
                                                              tGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAtt                             <  2:5057622/93‑1 (MQ=255)
                                                              tGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAtt                             <  2:1031487/93‑1 (MQ=255)
                                                                tAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGc                           >  2:804231/1‑93 (MQ=255)
                                                                tAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGc                           <  1:3136466/93‑1 (MQ=255)
                                                                  aaCCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCaa                         <  2:2863364/93‑1 (MQ=255)
                                                                   aCCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCaaa                        <  1:3928189/93‑1 (MQ=255)
                                                                      aTGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAg                     >  1:2756017/1‑93 (MQ=255)
                                                                        gCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGa                   <  1:1679304/93‑1 (MQ=255)
                                                                        gCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGa                   <  2:6416861/93‑1 (MQ=255)
                                                                          cAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACa                 <  1:5174122/93‑1 (MQ=255)
                                                                          cAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACa                 >  2:3367363/1‑93 (MQ=255)
                                                                            aCATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACAtt               <  1:6278442/93‑1 (MQ=255)
                                                                            aCATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACAtt               >  2:4576416/1‑93 (MQ=255)
                                                                            aCATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACAtt               <  2:2641371/93‑1 (MQ=255)
                                                                             cATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTa              >  1:4319216/1‑93 (MQ=255)
                                                                             cATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTa              <  2:4852535/93‑1 (MQ=255)
                                                                             cATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTa              >  2:6112536/1‑93 (MQ=255)
                                                                              aTTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTAc             <  1:1097846/93‑1 (MQ=255)
                                                                               ttAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTAcc            >  1:5365420/1‑93 (MQ=255)
                                                                               ttAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTAcc            >  1:43615/1‑93 (MQ=255)
                                                                                 aGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCtt          >  1:4418974/1‑93 (MQ=255)
                                                                                 aGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCtt          <  2:5410838/93‑1 (MQ=255)
                                                                                   cgcCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTa        <  1:1381876/93‑1 (MQ=255)
                                                                                    gcCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTaa       <  1:3236616/93‑1 (MQ=255)
                                                                                    gcCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTaa       <  2:4533629/93‑1 (MQ=255)
                                                                                    gcCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTaa       <  2:1667860/93‑1 (MQ=255)
                                                                                      cGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAgc     >  2:2193156/1‑93 (MQ=255)
                                                                                      cGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAgc     <  1:1193895/93‑1 (MQ=255)
                                                                                      cGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAgc     <  1:3975352/93‑1 (MQ=255)
                                                                                      cGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAgc     <  2:3570776/93‑1 (MQ=255)
                                                                                         |                                                                                            
CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCGCA  >  NC_000913/2521811‑2521992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCGCA  >  NC_000913/2521811‑2521992
                                                                                         |                                                                                            
CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAA                                                                                          <  SRR4302537.3186521/94‑1 (MQ=60)
CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAA                                                                                          >  SRR4302537.4506328/1‑94 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAACCCATGCCAACATCAGCGCCGGGGAAAT                                                                                         <  SRR4302537.5046064/94‑1 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         >  SRR4302537.3586310/1‑94 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         <  SRR4302537.6276504/94‑1 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         <  SRR4302537.2443345/94‑1 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         >  SRR4302537.480813/1‑94 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         <  SRR4302537.4900535/94‑1 (MQ=60)
 CATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAAT                                                                                         <  SRR4302537.1445689/94‑1 (MQ=60)
  ATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATG                                                                                        >  SRR4302537.5204620/1‑94 (MQ=60)
  ATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATG                                                                                        >  SRR4302537.5170660/1‑94 (MQ=60)
  ATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATG                                                                                        >  SRR4302537.86535/1‑94 (MQ=60)
  ATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATG                                                                                        <  SRR4302537.1402291/94‑1 (MQ=60)
    TTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAA                                                                                      >  SRR4302537.2142926/1‑94 (MQ=60)
    TTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAA                                                                                      <  SRR4302537.2705809/94‑1 (MQ=60)
       TCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAG                                                                                   <  SRR4302537.3030816/94‑1 (MQ=60)
          GCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTAT                                                                                <  SRR4302537.5270242/94‑1 (MQ=60)
            GATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTA                                                                              <  SRR4302537.3146358/94‑1 (MQ=60)
            GATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTA                                                                              <  SRR4302537.3302415/94‑1 (MQ=60)
            GATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTA                                                                              >  SRR4302537.4560297/1‑94 (MQ=60)
            GATGATCCCCATGATTCCAGGCATAATAATCGCAGCGATCCGTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTA                                                                              <  SRR4302537.3234799/94‑1 (MQ=60)
             ATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGCAATGAAGAGTATTAA                                                                             >  SRR4302537.6230539/1‑94 (MQ=60)
             ATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAA                                                                             >  SRR4302537.564182/1‑94 (MQ=60)
              TGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAAT                                                                            >  SRR4302537.368214/1‑94 (MQ=60)
              TGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAAT                                                                            <  SRR4302537.4275549/94‑1 (MQ=60)
               GATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATC                                                                           >  SRR4302537.3500139/1‑94 (MQ=60)
               GATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATC                                                                           >  SRR4302537.5571787/1‑94 (MQ=60)
                ATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCA                                                                          >  SRR4302537.2195217/1‑94 (MQ=60)
                ATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCA                                                                          >  SRR4302537.5702698/1‑94 (MQ=60)
                 TCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCAT                                                                         <  SRR4302537.5157908/94‑1 (MQ=60)
                  CCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATG                                                                        >  SRR4302537.1408587/1‑94 (MQ=60)
                  CCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATG                                                                        >  SRR4302537.6085318/1‑94 (MQ=60)
                  CCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATG                                                                        <  SRR4302537.2964335/94‑1 (MQ=60)
                   CCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGT                                                                       <  SRR4302537.4539872/94‑1 (MQ=60)
                      ATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAG                                                                    <  SRR4302537.3680622/94‑1 (MQ=60)
                      ATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAG                                                                    <  SRR4302537.6410197/94‑1 (MQ=60)
                      ATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAG                                                                    >  SRR4302537.2861901/1‑94 (MQ=60)
                      ATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAG                                                                    <  SRR4302537.6345821/94‑1 (MQ=60)
                       TTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGA                                                                   <  SRR4302537.4734190/94‑1 (MQ=60)
                       TTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGA                                                                   <  SRR4302537.2391699/94‑1 (MQ=60)
                       TTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGA                                                                   <  SRR4302537.5146580/94‑1 (MQ=60)
                       TTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGA                                                                   <  SRR4302537.5146579/94‑1 (MQ=60)
                        TATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAG                                                                  <  SRR4302537.3358453/94‑1 (MQ=60)
                        TATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAG                                                                  <  SRR4302537.1081769/94‑1 (MQ=60)
                         ATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGC                                                                 <  SRR4302537.1050810/94‑1 (MQ=60)
                         ATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGC                                                                 >  SRR4302537.2525049/1‑94 (MQ=60)
                          TACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCC                                                                >  SRR4302537.362309/1‑94 (MQ=60)
                          TACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCC                                                                <  SRR4302537.795762/94‑1 (MQ=60)
                           ACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCG                                                               <  SRR4302537.1400698/94‑1 (MQ=60)
                           ACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCG                                                               >  SRR4302537.129659/1‑94 (MQ=60)
                            CCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGA                                                              >  SRR4302537.2849517/1‑94 (MQ=60)
                             CAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAG                                                             <  SRR4302537.4819058/94‑1 (MQ=60)
                             CAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAG                                                             >  SRR4302537.6205546/1‑94 (MQ=60)
                               GGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGG                                                           <  SRR4302537.3034418/94‑1 (MQ=60)
                               GGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGG                                                           >  SRR4302537.4203200/1‑94 (MQ=60)
                                GCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGT                                                          <  SRR4302537.3986101/94‑1 (MQ=60)
                                GCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGCATTAATCATGTAAGAGACGAGGGT                                                          >  SRR4302537.3624656/1‑94 (MQ=60)
                                    AATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACC                                                      <  SRR4302537.3565750/94‑1 (MQ=60)
                                      TAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAG                                                    <  SRR4302537.1562594/94‑1 (MQ=60)
                                      TAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAG                                                    >  SRR4302537.8032/1‑94 (MQ=60)
                                        ATCGCGGCGATCCATTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCC                                                  >  SRR4302537.3671103/1‑94 (MQ=60)
                                         TCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCA                                                 <  SRR4302537.5101691/94‑1 (MQ=60)
                                          CGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAG                                                >  SRR4302537.1503737/1‑94 (MQ=60)
                                          CGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAG                                                <  SRR4302537.726735/94‑1 (MQ=60)
                                            CGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCT                                              >  SRR4302537.1468110/1‑94 (MQ=60)
                                            CGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCT                                              <  SRR4302537.5137607/94‑1 (MQ=60)
                                            CGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCT                                              <  SRR4302537.3937969/94‑1 (MQ=60)
                                             GGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTC                                             >  SRR4302537.4355461/1‑94 (MQ=60)
                                                GATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCC                                          >  SRR4302537.2125541/1‑94 (MQ=60)
                                                GATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCC                                          >  SRR4302537.2328353/1‑94 (MQ=60)
                                                GATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCC                                          >  SRR4302537.6138685/1‑94 (MQ=60)
                                                 ATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCC                                         <  SRR4302537.6480826/94‑1 (MQ=60)
                                                  TCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCA                                        >  SRR4302537.5224490/1‑94 (MQ=60)
                                                   CCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAG                                       >  SRR4302537.5576328/1‑94 (MQ=60)
                                                   CCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAG                                       <  SRR4302537.93754/94‑1 (MQ=60)
                                                   CCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAG                                       <  SRR4302537.2412943/94‑1 (MQ=60)
                                                    CCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGA                                      >  SRR4302537.4778912/1‑94 (MQ=60)
                                                    CCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGA                                      >  SRR4302537.1318744/1‑94 (MQ=60)
                                                      TTTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATA                                    <  SRR4302537.2155616/94‑1 (MQ=60)
                                                       TTGGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAA                                   <  SRR4302537.4966260/94‑1 (MQ=60)
                                                         GGAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAA                                 <  SRR4302537.5675553/94‑1 (MQ=60)
                                                          GAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAAT                                >  SRR4302537.1519702/1‑94 (MQ=60)
                                                          GAACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAAT                                <  SRR4302537.5795873/94‑1 (MQ=60)
                                                            ACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAT                              <  SRR4302537.1008683/94‑1 (MQ=60)
                                                            ACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAT                              <  SRR4302537.3104289/94‑1 (MQ=60)
                                                            ACTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATAT                              >  SRR4302537.6514731/1‑94 (MQ=60)
                                                             CTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATT                             >  SRR4302537.639102/1‑94 (MQ=60)
                                                             CTGTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATT                             >  SRR4302537.5690723/1‑94 (MQ=60)
                                                               GTAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGC                           >  SRR4302537.3949695/1‑94 (MQ=60)
                                                                TAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCA                          <  SRR4302537.6409096/94‑1 (MQ=60)
                                                                TAAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCA                          <  SRR4302537.3158479/94‑1 (MQ=60)
                                                                 AAACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAGCCAGCCAGCTCCCCCAGATAAAATATTGCAA                         >  SRR4302537.1400081/1‑94 (MQ=60)
                                                                  ATCCATGCCAACATTAGCGCCGGTCAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAA                        <  SRR4302537.4118541/94‑1 (MQ=60)
                                                                  AACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAA                        >  SRR4302537.4479020/1‑94 (MQ=60)
                                                                   ACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAA                       <  SRR4302537.3955636/94‑1 (MQ=60)
                                                                   ACCATGCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAA                       >  SRR4302537.1395926/1‑94 (MQ=60)
                                                                     CATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAG                     >  SRR4302537.2775254/1‑94 (MQ=60)
                                                                        GCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGAC                  >  SRR4302537.1121127/1‑94 (MQ=60)
                                                                        GCCAACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGAC                  <  SRR4302537.1691054/94‑1 (MQ=60)
                                                                        GCCAACATTAGCGCCGGGGAAATGAAGAGGATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGAC                  >  SRR4302537.2369090/1‑94 (MQ=60)
                                                                          CAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACAT                <  SRR4302537.5209737/94‑1 (MQ=60)
                                                                           AACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATT               >  SRR4302537.1208206/1‑94 (MQ=60)
                                                                           AACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATT               <  SRR4302537.6147673/94‑1 (MQ=60)
                                                                            ACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTA              <  SRR4302537.6321508/94‑1 (MQ=60)
                                                                            ACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTA              >  SRR4302537.4349241/1‑94 (MQ=60)
                                                                            ACATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTA              <  SRR4302537.4235363/94‑1 (MQ=60)
                                                                             CATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTAC             <  SRR4302537.1049488/94‑1 (MQ=60)
                                                                              ATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACC            >  SRR4302537.43940/1‑94 (MQ=60)
                                                                              ATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACC            <  SRR4302537.1105432/94‑1 (MQ=60)
                                                                              ATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACC            >  SRR4302537.5402136/1‑94 (MQ=60)
                                                                              ATTAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACC            <  SRR4302537.2958152/94‑1 (MQ=60)
                                                                                TAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTT          <  SRR4302537.1627850/94‑1 (MQ=60)
                                                                                TAGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTT          >  SRR4302537.4449483/1‑94 (MQ=60)
                                                                                 AGCGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTT         >  SRR4302537.6475422/1‑94 (MQ=60)
                                                                                   CGCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAA       <  SRR4302537.1391517/94‑1 (MQ=60)
                                                                                    GCCGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAG      <  SRR4302537.3259428/94‑1 (MQ=60)
                                                                                      CGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCG    <  SRR4302537.4003177/94‑1 (MQ=60)
                                                                                      CGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCG    <  SRR4302537.3661914/94‑1 (MQ=60)
                                                                                      CGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCG    <  SRR4302537.4419505/94‑1 (MQ=60)
                                                                                      CGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCG    <  SRR4302537.1202184/94‑1 (MQ=60)
                                                                                      CGGGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCG    <  SRR4302537.1113539/94‑1 (MQ=60)
                                                                                        GGGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCGCA  >  SRR4302537.6389315/1‑94 (MQ=60)
                                                                                         |                                                                                            
CCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTAAGAGCCGAGGGTAACCAGCCAGCTCCCCCAGATAAAATATTGCAAAAAGGACATTACCTTTAAGCGCA  >  NC_000913/2521811‑2521992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑