Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,620,459	G→A	R69Q (CGG→CAG)	purN →	phosphoribosylglycinamide formyltransferase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,620,459	0	G	A	100.0%	839.9 / NA	233	R69Q (CGG→CAG)	purN	phosphoribosylglycinamide formyltransferase 1
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (102/131); total (102/131)

Only 100 of 241 total aligned reads displayed.

ACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCGGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCC  >  NC_000913/2620369‑2620548

aCGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCagg                                                                                         >  1:267858/1‑93 (MQ=255)

aCGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCagg                                                                                         >  2:2060319/1‑93 (MQ=255)

  gcgTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAg                                                                                       <  2:3541562/93‑1 (MQ=255)

   cgTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGt                                                                                      <  1:5768902/93‑1 (MQ=255)

    gTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGtt                                                                                     <  1:1166293/93‑1 (MQ=255)

     ttCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCTTATGACCAGGAGTTg                                                                                    >  1:1202861/1‑93 (MQ=255)

     ttCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTg                                                                                    >  1:4314965/1‑93 (MQ=255)

     ttCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTg                                                                                    >  1:1582345/1‑93 (MQ=255)

       cGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGAt                                                                                  <  2:3937754/93‑1 (MQ=255)

       cGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGAt                                                                                  <  1:4506258/93‑1 (MQ=255)

       cGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGAt                                                                                  <  2:313968/93‑1 (MQ=255)

        ggCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGAtt                                                                                 <  1:5984389/93‑1 (MQ=255)

          ccTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCa                                                                               >  2:5904389/1‑93 (MQ=255)

          ccTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCa                                                                               >  2:2428297/1‑93 (MQ=255)

          ccTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCa                                                                               <  2:4260911/93‑1 (MQ=255)

          ccTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCa                                                                               >  1:4140859/1‑93 (MQ=255)

            ttGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATg                                                                             >  1:796000/1‑93 (MQ=255)

            ttGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATg                                                                             <  2:1814868/93‑1 (MQ=255)

             tGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGa                                                                            <  2:4307658/93‑1 (MQ=255)

              gAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGaa                                                                           >  1:4355119/1‑93 (MQ=255)

               aaCGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGaaa                                                                          <  2:5948228/93‑1 (MQ=255)

               aaCGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGaaa                                                                          <  1:1535314/93‑1 (MQ=255)

                aCGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAAt                                                                         <  2:3303756/93‑1 (MQ=255)

                 cgcgCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGCTGATTCATGAAAtg                                                                        >  2:1534717/1‑92 (MQ=255)

                  gcgcCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCg                                                                       <  2:2680498/93‑1 (MQ=255)

                    gcgcgccAGGCGGGTATTGCAACACATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGAc                                                                     <  1:3259562/90‑1 (MQ=255)

                    gcccgccAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGAc                                                                     >  1:1096926/1‑93 (MQ=255)

                      ccgccAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACAt                                                                   <  2:1886677/93‑1 (MQ=255)

                      ccgccAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACAt                                                                   <  2:3107206/93‑1 (MQ=255)

                         ccAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTa                                                                <  2:4833923/93‑1 (MQ=255)

                          cAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTAc                                                               >  1:1723682/1‑93 (MQ=255)

                          cAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTAc                                                               >  2:539921/1‑93 (MQ=255)

                           aGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACg                                                              <  2:3966284/93‑1 (MQ=255)

                            ggCGGGTATTGCAACGCATCCGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGc                                                             <  1:1272108/93‑1 (MQ=255)

                            ggCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGc                                                             >  2:6273922/1‑93 (MQ=255)

                              cGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAc                                                           >  1:5752796/1‑93 (MQ=255)

                               gggTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAcc                                                          >  2:5746624/1‑93 (MQ=255)

                                ggTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAccc                                                         >  1:3345509/1‑93 (MQ=255)

                                ggTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAccc                                                         >  2:1344572/1‑93 (MQ=255)

                                ggTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAccc                                                         >  2:2841460/1‑93 (MQ=255)

                                  tATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGGCCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGa                                                       <  1:4836000/93‑1 (MQ=255)

                                  tATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGa                                                       >  1:2732354/1‑93 (MQ=255)

                                  tATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGa                                                       <  2:3813105/93‑1 (MQ=255)

                                    ttGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGAtg                                                     <  1:5183605/93‑1 (MQ=255)

                                    ttGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGAtg                                                     >  2:5329110/1‑93 (MQ=255)

                                        aaCGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGt                                                 >  1:6358275/1‑93 (MQ=255)

                                         aCGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTc                                                <  2:6110338/93‑1 (MQ=255)

                                         aCGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTc                                                <  1:4525114/93‑1 (MQ=255)

                                            cATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTg                                             <  2:1777837/93‑1 (MQ=255)

                                             aTACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgc                                            <  2:2227756/93‑1 (MQ=255)

                                             aTACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgc                                            <  2:4995153/93‑1 (MQ=255)

                                             aTACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgc                                            >  2:898256/1‑93 (MQ=255)

                                                 gCTCATCGCCAGCTCGTTTGACAGTCGTGAAGGCTATGACCAGGAGTTGATTTATGAAATCGACAACTCAGCACGCGAACTGTTCGTgctggg                                        >  2:1134416/1‑92 (MQ=255)

                                                 gCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggc                                        >  2:668417/1‑93 (MQ=255)

                                                 gCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggc                                        <  1:1880583/93‑1 (MQ=255)

                                                 gCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggc                                        >  1:6085144/1‑93 (MQ=255)

                                                  cTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggct                                       >  2:2862620/1‑93 (MQ=255)

                                                   tCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggctg                                      >  2:4739339/1‑93 (MQ=255)

                                                   tCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTgctggctg                                      <  2:6471401/93‑1 (MQ=255)

                                                      tCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGtt                                   <  2:5100018/93‑1 (MQ=255)

                                                        gCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGtttt                                 >  1:4253528/1‑93 (MQ=255)

                                                         ccAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTa                                <  1:3863312/93‑1 (MQ=255)

                                                         ccAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTa                                <  1:2114329/93‑1 (MQ=255)

                                                         ccAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTa                                >  2:2932226/1‑93 (MQ=255)

                                                         ccAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTa                                >  1:2583723/1‑93 (MQ=255)

                                                          cAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTAt                               <  2:2163583/93‑1 (MQ=255)

                                                          cAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTAt                               <  1:4712013/93‑1 (MQ=255)

                                                           aGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATg                              <  2:6239680/93‑1 (MQ=255)

                                                           aGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATg                              <  1:2957351/93‑1 (MQ=255)

                                                              gcgTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATgcgc                           >  2:1711907/1‑93 (MQ=255)

                                                               cgTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCa                          <  1:4474589/93‑1 (MQ=255)

                                                                gTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAt                         <  2:2553343/93‑1 (MQ=255)

                                                                 tttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAtt                        <  2:447958/93‑1 (MQ=255)

                                                                 tttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAtt                        >  1:1740122/1‑93 (MQ=255)

                                                                 tttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAtt                        >  1:3594151/1‑93 (MQ=255)

                                                                  ttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtc                       <  2:5174145/93‑1 (MQ=255)

                                                                  ttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtc                       <  1:1341011/93‑1 (MQ=255)

                                                                  ttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtc                       <  2:4136135/93‑1 (MQ=255)

                                                                  ttGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtc                       <  1:6390065/93‑1 (MQ=255)

                                                                   tGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtct                      >  1:1938935/1‑93 (MQ=255)

                                                                   tGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtct                      <  2:1287758/93‑1 (MQ=255)

                                                                   tGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtct                      <  1:3093369/93‑1 (MQ=255)

                                                                   tGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATtct                      <  1:560446/93‑1 (MQ=255)

                                                                      cAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAg                   >  2:1447674/1‑93 (MQ=255)

                                                                        gTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGcc                 >  2:1414832/1‑93 (MQ=255)

                                                                        gTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGcc                 >  2:6259985/1‑93 (MQ=255)

                                                                         tCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGccc                <  2:3477305/93‑1 (MQ=255)

                                                                           gTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCgg              >  1:2826907/1‑93 (MQ=255)

                                                                               aGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGtt          >  2:6083432/1‑93 (MQ=255)

                                                                               aGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGtt          >  2:1802289/1‑93 (MQ=255)

                                                                                 ccTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTg        >  2:3248202/1‑93 (MQ=255)

                                                                                  cTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGt       <  1:1842217/93‑1 (MQ=255)

                                                                                  cTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGt       >  2:4533038/1‑93 (MQ=255)

                                                                                  cTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGt       >  1:2216400/1‑93 (MQ=255)

                                                                                  cTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGt       <  1:5400486/93‑1 (MQ=255)

                                                                                   tATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGtc      >  1:5706866/1‑93 (MQ=255)

                                                                                    aTGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGtct     >  1:1547576/1‑93 (MQ=255)

                                                                                      gACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTcc   >  1:487437/1‑93 (MQ=255)

                                                                                      gACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTcc   <  1:5064149/93‑1 (MQ=255)

                                                                                       aCCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTccc  >  2:80072/1‑93 (MQ=255)

ACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCGGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCC  >  NC_000913/2620369‑2620548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCGGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACTA  >  NC_000913/2620366‑2620552

CCGACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCA                                                                                               <  SRR4302537.5056833/94‑1 (MQ=60)

CCGACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCA                                                                                               >  SRR4302537.1750247/1‑94 (MQ=60)

  GACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGG                                                                                             >  SRR4302537.269743/1‑94 (MQ=60)

      CGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTT                                                                                         <  SRR4302537.5808440/94‑1 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCTTATGACCAGGAGTTG                                                                                        >  SRR4302537.1211226/1‑94 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        <  SRR4302537.4823110/94‑1 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        <  SRR4302537.1174402/94‑1 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        >  SRR4302537.4190944/1‑94 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        >  SRR4302537.1593407/1‑94 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        >  SRR4302537.4344954/1‑94 (MQ=60)

       GTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTG                                                                                        <  SRR4302537.2816717/94‑1 (MQ=60)

        TTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGA                                                                                       <  SRR4302537.501389/94‑1 (MQ=60)

          CGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATT                                                                                     <  SRR4302537.4537418/94‑1 (MQ=60)

           GGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTC                                                                                    >  SRR4302537.3511489/1‑94 (MQ=60)

           GGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTC                                                                                    <  SRR4302537.6025459/94‑1 (MQ=60)

           GGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTC                                                                                    >  SRR4302537.3926807/1‑94 (MQ=60)

            GCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCA                                                                                   <  SRR4302537.4524448/94‑1 (MQ=60)

            GCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCA                                                                                   >  SRR4302537.4169745/1‑94 (MQ=60)

            GCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCA                                                                                   <  SRR4302537.1739276/94‑1 (MQ=60)

             CCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCAT                                                                                  <  SRR4302537.1868668/94‑1 (MQ=60)

              CTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATG                                                                                 >  SRR4302537.1675397/1‑94 (MQ=60)

              CTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATG                                                                                 >  SRR4302537.801460/1‑94 (MQ=60)

              CTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATG                                                                                 <  SRR4302537.4740320/94‑1 (MQ=60)

               TTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGA                                                                                <  SRR4302537.802554/94‑1 (MQ=60)

               TTGAACGCGCCCGCCAGGCGGGGATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGATTTGATTCATGA                                                                                >  SRR4302537.5269834/1‑94 (MQ=60)

                TGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAA                                                                               <  SRR4302537.2614333/94‑1 (MQ=60)

                TGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAA                                                                               >  SRR4302537.4385270/1‑94 (MQ=60)

                 GAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAA                                                                              <  SRR4302537.1294278/94‑1 (MQ=60)

                  AACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAAT                                                                             <  SRR4302537.1546036/94‑1 (MQ=60)

                  AACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAAT                                                                             <  SRR4302537.4548930/94‑1 (MQ=60)

                    CGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCG                                                                           <  SRR4302537.1941524/94‑1 (MQ=60)

                    CGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCG                                                                           >  SRR4302537.2040309/1‑94 (MQ=60)

                     GCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGA                                                                          <  SRR4302537.2347028/94‑1 (MQ=60)

                     GCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGA                                                                          >  SRR4302537.2151721/1‑94 (MQ=60)

                      CGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGAC                                                                         >  SRR4302537.1104503/1‑94 (MQ=60)

                       GCGCGCCAGGCGGGTATTGCAACACATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACA                                                                        <  SRR4302537.3282549/94‑1 (MQ=60)

                        CCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACAT                                                                       >  SRR4302537.1549465/1‑94 (MQ=60)

                         CCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATG                                                                      <  SRR4302537.4639341/94‑1 (MQ=60)

                          CGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGT                                                                     <  SRR4302537.491395/94‑1 (MQ=60)

                          CGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGT                                                                     >  SRR4302537.1613254/1‑94 (MQ=60)

                            CCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTAC                                                                   >  SRR4302537.1735725/1‑94 (MQ=60)

                            CCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTAC                                                                   <  SRR4302537.6126964/94‑1 (MQ=60)

                              AGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGC                                                                 >  SRR4302537.3323078/1‑94 (MQ=60)

                               GGCGGGTATTGCAACGCATCCGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCA                                                                <  SRR4302537.1280950/94‑1 (MQ=60)

                                GCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCAC                                                               >  SRR4302537.5792203/1‑94 (MQ=60)

                                  GGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCC                                                             >  SRR4302537.596494/1‑94 (MQ=60)

                                  GGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCC                                                             >  SRR4302537.3369192/1‑94 (MQ=60)

                                    GTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGA                                                           >  SRR4302537.2751427/1‑94 (MQ=60)

                                     TATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGGCCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGAT                                                          <  SRR4302537.4869392/94‑1 (MQ=60)

                                      ATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATG                                                         >  SRR4302537.4507091/1‑94 (MQ=60)

                                       TTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGT                                                        <  SRR4302537.5805591/94‑1 (MQ=60)

                                       TTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGT                                                        <  SRR4302537.5219268/94‑1 (MQ=60)

                                        TGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTG                                                       <  SRR4302537.795958/94‑1 (MQ=60)

                                         GCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGG                                                      <  SRR4302537.831192/94‑1 (MQ=60)

                                         GCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGG                                                      <  SRR4302537.4890400/94‑1 (MQ=60)

                                          CAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGT                                                     >  SRR4302537.6401663/1‑94 (MQ=60)

                                           AACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTC                                                    >  SRR4302537.1125912/1‑94 (MQ=60)

                                           AACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTC                                                    <  SRR4302537.3115807/94‑1 (MQ=60)

                                            ACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCG                                                   <  SRR4302537.4556423/94‑1 (MQ=60)

                                             CGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGT                                                  >  SRR4302537.2405706/1‑94 (MQ=60)

                                              GCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTG                                                 >  SRR4302537.1414091/1‑94 (MQ=60)

                                              GCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTG                                                 <  SRR4302537.4439785/94‑1 (MQ=60)

                                              GCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTG                                                 >  SRR4302537.6403352/1‑94 (MQ=60)

                                              GCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTC                                                 >  SRR4302537.5402918/1‑94 (MQ=60)

                                                ATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCT                                               >  SRR4302537.6163249/1‑94 (MQ=60)

                                                   CGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGC                                            >  SRR4302537.6126948/1‑94 (MQ=60)

                                                    GCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCT                                           <  SRR4302537.300845/94‑1 (MQ=60)

                                                    GCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCT                                           <  SRR4302537.1893662/94‑1 (MQ=60)

                                                      TCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGG                                         >  SRR4302537.4290575/1‑94 (MQ=60)

                                                      TCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGG                                         <  SRR4302537.2093408/94‑1 (MQ=60)

                                                        ATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTT                                       <  SRR4302537.5726212/94‑1 (MQ=60)

                                                        ATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTT                                       >  SRR4302537.4286764/1‑94 (MQ=60)

                                                          CGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTT                                     >  SRR4302537.4283094/1‑94 (MQ=60)

                                                          CGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTT                                     >  SRR4302537.6035975/1‑94 (MQ=60)

                                                           GCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTA                                    <  SRR4302537.1190671/94‑1 (MQ=60)

                                                           GCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTA                                    >  SRR4302537.2601805/1‑94 (MQ=60)

                                                           GCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTA                                    <  SRR4302537.1239587/94‑1 (MQ=60)

                                                            CCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTAT                                   <  SRR4302537.3890355/94‑1 (MQ=60)

                                                            CCAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTAT                                   <  SRR4302537.2129229/94‑1 (MQ=60)

                                                             CAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATG                                  >  SRR4302537.1269659/1‑94 (MQ=60)

                                                             CAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATG                                  <  SRR4302537.5757788/94‑1 (MQ=60)

                                                             CAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATG                                  >  SRR4302537.1481781/1‑94 (MQ=60)

                                                             CAGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATG                                  <  SRR4302537.4744609/94‑1 (MQ=60)

                                                              AGCGCGTTTGTCAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGC                                 >  SRR4302537.3721467/1‑94 (MQ=60)

                                                              AGCGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGC                                 <  SRR4302537.2978101/94‑1 (MQ=60)

                                                                CGCGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGC                               <  SRR4302537.2780213/94‑1 (MQ=60)

                                                                  CGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAT                             <  SRR4302537.4505541/94‑1 (MQ=60)

                                                                  CGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAT                             >  SRR4302537.5812917/1‑94 (MQ=60)

                                                                  CGTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCAT                             >  SRR4302537.156745/1‑94 (MQ=60)

                                                                   GTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATT                            >  SRR4302537.3619488/1‑94 (MQ=60)

                                                                   GTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATT                            >  SRR4302537.1752250/1‑94 (MQ=60)

                                                                   GTTTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATT                            >  SRR4302537.1772893/1‑94 (MQ=60)

                                                                     TTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCT                          >  SRR4302537.1952417/1‑94 (MQ=60)

                                                                     TTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCT                          <  SRR4302537.1350350/94‑1 (MQ=60)

                                                                     TTGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCT                          <  SRR4302537.6433603/94‑1 (MQ=60)

                                                                      TGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTC                         <  SRR4302537.564308/94‑1 (MQ=60)

                                                                      TGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTC                         <  SRR4302537.3114946/94‑1 (MQ=60)

                                                                      TGACAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTC                         >  SRR4302537.3322168/1‑94 (MQ=60)

                                                                       GACAGTCGTGAAGCCTATGACCAGGAGTAGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCA                        <  SRR4302537.57561/94‑1 (MQ=60)

                                                                         CAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGC                      <  SRR4302537.1764210/94‑1 (MQ=60)

                                                                         CAGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGGTTTATGCGCATTCTCAGC                      >  SRR4302537.2895476/1‑94 (MQ=60)

                                                                          AGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCC                     >  SRR4302537.5579092/1‑94 (MQ=60)

                                                                          AGTCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCC                     <  SRR4302537.5181480/94‑1 (MQ=60)

                                                                            TCGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCG                   <  SRR4302537.2740243/94‑1 (MQ=60)

                                                                             CGTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGG                  >  SRR4302537.2846664/1‑94 (MQ=60)

                                                                              GTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGC                 <  SRR4302537.4380404/94‑1 (MQ=60)

                                                                              GTGAAGCCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGC                 >  SRR4302537.3102750/1‑94 (MQ=60)

                                                                                    CCTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGT           >  SRR4302537.2232026/1‑94 (MQ=60)

                                                                                     CTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTC          <  SRR4302537.1855039/94‑1 (MQ=60)

                                                                                     CTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTC          >  SRR4302537.5745919/1‑94 (MQ=60)

                                                                                     CTATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTC          <  SRR4302537.5437347/94‑1 (MQ=60)

                                                                                      TATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCT         >  SRR4302537.1558378/1‑94 (MQ=60)

                                                                                       ATGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTC        <  SRR4302537.4046663/94‑1 (MQ=60)

                                                                                        TGACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCC       >  SRR4302537.490785/1‑94 (MQ=60)

                                                                                         GACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCC      <  SRR4302537.5099005/94‑1 (MQ=60)

                                                                                          ACCAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCATCCCGGCGTTTGTCTCCCC     >  SRR4302537.4483784/1‑94 (MQ=60)

                                                                                            CAGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACT   <  SRR4302537.1505228/94‑1 (MQ=60)

                                                                                             AGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACTA  >  SRR4302537.397803/1‑94 (MQ=60)

                                                                                             AGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACTA  >  SRR4302537.3965876/1‑94 (MQ=60)

                                                                                             AGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACTA  >  SRR4302537.1149678/1‑94 (MQ=60)

CCGACGCGTTCGGCCTTGAACGCGCCCGCCAGGCGGGTATTGCAACGCATACGCTCATCGCCAGCGCGTTTGACAGTCGTGAAGCCTATGACCGGGAGTTGATTCATGAAATCGACATGTACGCACCCGATGTGGTCGTGCTGGCTGGTTTTATGCGCATTCTCAGCCCGGCGTTTGTCTCCCACTA  >  NC_000913/2620366‑2620552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`