Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,682,855	T→C	T225A (ACC→GCC)	glyA ←	serine hydroxymethyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,682,855	0	T	C	100.0%	627.3 / NA	181	T225A (ACC→GCC)	glyA	serine hydroxymethyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (100/81); total (100/81)

Only 100 of 201 total aligned reads displayed.

CAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAA  >  NC_000913/2682765‑2682943

cAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcag                                                                                        <  1:838933/93‑1 (MQ=255)

cAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcag                                                                                        <  1:275210/93‑1 (MQ=255)

cAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcag                                                                                        >  2:1956440/1‑93 (MQ=255)

 agagTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcagt                                                                                       >  2:881113/1‑93 (MQ=255)

 agagTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcagt                                                                                       >  1:4965201/1‑93 (MQ=255)

  gagTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcagta                                                                                      >  2:5612494/1‑93 (MQ=255)

  gagTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGgcagta                                                                                      >  1:2424795/1‑93 (MQ=255)

    gTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTaac                                                                                    <  1:3676836/93‑1 (MQ=255)

    gTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTaac                                                                                    >  2:1808466/1‑93 (MQ=255)

     ttCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGAGCCGCCAGGGATTTGTGAGTGGTGGGAGTaaca                                                                                   >  1:4486252/1‑93 (MQ=255)

      tCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTaacaa                                                                                  >  1:1743882/1‑93 (MQ=255)

      tCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTaacaa                                                                                  >  2:1907388/1‑93 (MQ=255)

      tCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGCTTTGTGAGTGGTGGCAGTaacaa                                                                                  >  2:2001273/1‑93 (MQ=255)

       cAGTTTTTTGTACAGCTCTTCCCTACCACCTTTCGCCAGGATCATGCCGCCGCGCGGACGCGCCCGGGGTTTGTGAGTGGTGGCAGTcgcaac                                                                                 >  1:3168052/1‑93 (MQ=255)

        aGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACg                                                                                <  2:5006434/93‑1 (MQ=255)

        aGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACg                                                                                >  1:5739796/1‑93 (MQ=255)

          ttttttGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGTCGCGCGGACCCGCCAGGGTATTGTGAGTGGTGGCAGTAACAACgcg                                                                              >  2:5219948/1‑91 (MQ=255)

           tttttGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGa                                                                             >  2:2542542/1‑93 (MQ=255)

            ttttGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAg                                                                            <  1:5052638/93‑1 (MQ=255)

             tttGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGc                                                                           <  2:3106094/93‑1 (MQ=255)

             tttGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGGTTTGTGAGTGGTGGCAGTAACAACGTGAGc                                                                           >  1:5145822/1‑93 (MQ=255)

               tGTACAGCTCTTCGCTACCCCCTTCCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCAt                                                                         <  2:3583318/93‑1 (MQ=255)

               tGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCAt                                                                         >  1:6101219/1‑93 (MQ=255)

               tGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCAt                                                                         <  2:327617/93‑1 (MQ=255)

                 tACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGa                                                                       <  2:3061113/93‑1 (MQ=255)

                  tcAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGAACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAg                                                                      <  1:2841216/92‑1 (MQ=255)

                  aCAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAg                                                                      >  1:1011801/1‑93 (MQ=255)

                  aCAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAg                                                                      >  1:3817946/1‑93 (MQ=255)

                    aGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGATTTGTGAGTGGTGGCAGTTACAACGTGAGCATGAGGa                                                                    >  1:2899259/1‑93 (MQ=255)

                     gCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGaa                                                                   >  1:6266823/1‑93 (MQ=255)

                     gCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGaa                                                                   <  1:475973/93‑1 (MQ=255)

                       tctTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAAcc                                                                 >  1:748753/1‑93 (MQ=255)

                        ctTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCg                                                                >  1:5968327/1‑93 (MQ=255)

                         ttCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCgg                                                               <  1:4078389/93‑1 (MQ=255)

                          tCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCggg                                                              >  1:5360148/1‑93 (MQ=255)

                          tCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCggg                                                              >  1:339499/1‑93 (MQ=255)

                            gCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGtt                                                            >  2:1140385/1‑93 (MQ=255)

                            gCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGtt                                                            >  1:3779073/1‑93 (MQ=255)

                            gCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGtt                                                            >  2:3606001/1‑93 (MQ=255)

                            gCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGtt                                                            >  1:2604328/1‑93 (MQ=255)

                              tACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCg                                                          >  2:4893231/1‑93 (MQ=255)

                               accaccTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCgg                                                         >  2:1415156/1‑93 (MQ=255)

                                 caccTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGt                                                       >  1:5685344/1‑93 (MQ=255)

                                   ccTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAg                                                     >  1:3862850/1‑93 (MQ=255)

                                   ccTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCAAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAg                                                     >  1:3122011/1‑93 (MQ=255)

                                    cTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGa                                                    <  1:6445961/93‑1 (MQ=255)

                                     tttCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGAc                                                   <  2:5910449/93‑1 (MQ=255)

                                      ttCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACg                                                  >  1:3532946/1‑93 (MQ=255)

                                      ttCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACg                                                  >  2:1323760/1‑93 (MQ=255)

                                       tCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGc                                                 >  2:6088390/1‑93 (MQ=255)

                                        cGCCAGGATCAGGCCGCGGCGAGGTCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGcc                                                <  1:1512373/93‑1 (MQ=255)

                                        cGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGcc                                                <  1:1063215/93‑1 (MQ=255)

                                          ccAGGATCAGGTCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCcag                                              >  2:2451746/1‑93 (MQ=255)

                                          ccAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGGGGACGCcag                                              >  1:1286366/1‑93 (MQ=255)

                                          ccAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTGCGGGTAGACGCcag                                              >  1:2848976/1‑93 (MQ=255)

                                           cAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCcagc                                             >  1:4132948/1‑93 (MQ=255)

                                            aGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCcagca                                            <  1:713945/93‑1 (MQ=255)

                                             ggATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCcagcag                                           <  1:2513661/93‑1 (MQ=255)

                                               aTCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAgcagca                                         >  2:3811290/1‑93 (MQ=255)

                                                  gggcggcCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAAcc                                      <  1:2662534/92‑1 (MQ=255)

                                                   ggCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCa                                     >  1:5817840/1‑93 (MQ=255)

                                                   ggCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCa                                     >  1:1901037/1‑93 (MQ=255)

                                                   ggCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCa                                     >  1:2002244/1‑93 (MQ=255)

                                                   ggCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCa                                     >  1:2238024/1‑93 (MQ=255)

                                                    gccgccGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAg                                    <  2:6232488/93‑1 (MQ=255)

                                                    gccgccGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAg                                    >  1:6339152/1‑93 (MQ=255)

                                                     ccgccgCGCGGGCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAgg                                   <  1:2872967/93‑1 (MQ=255)

                                                     ccgccgCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAgg                                   >  2:3219630/1‑93 (MQ=255)

                                                     ccgccgCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAgc                                   >  1:1646868/1‑92 (MQ=255)

                                                      cgccgcGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGc                                  <  2:3462994/93‑1 (MQ=255)

                                                       gccgcGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGcc                                 <  1:3083517/93‑1 (MQ=255)

                                                       gccgcGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGcc                                 >  2:6459620/1‑93 (MQ=255)

                                                         cgcgcgGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCg                               >  2:2228372/1‑93 (MQ=255)

                                                         cgcgcgGACCCGCCAGGGTGTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCg                               <  1:4298351/93‑1 (MQ=255)

                                                               gACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGt                         >  1:3997612/1‑93 (MQ=255)

                                                               gACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGt                         <  1:2408409/93‑1 (MQ=255)

                                                                 cccGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAGCCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTgc                       <  2:5636817/93‑1 (MQ=255)

                                                                 cccGCCAGAGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTgc                       >  2:6294809/1‑93 (MQ=255)

                                                                      cAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCat                  >  2:5189965/1‑93 (MQ=255)

                                                                       aGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCata                 >  2:1625996/1‑93 (MQ=255)

                                                                        gggTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCatat                >  2:684768/1‑93 (MQ=255)

                                                                        gggTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCatat                <  1:110921/93‑1 (MQ=255)

                                                                        gggTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCatat                >  2:4051876/1‑93 (MQ=255)

                                                                        gggTTTTGTGAGAGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCatat                <  2:4613721/93‑1 (MQ=255)

                                                                          gTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCa              >  2:3264633/1‑93 (MQ=255)

                                                                          gTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCa              <  1:1863744/93‑1 (MQ=255)

                                                                          gTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCa              >  2:4788045/1‑93 (MQ=255)

                                                                          gTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCa              >  1:457566/1‑93 (MQ=255)

                                                                           ttttGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTGCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCaa             <  1:5445628/93‑1 (MQ=255)

                                                                            tttGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAAc            <  1:5301694/93‑1 (MQ=255)

                                                                             ttGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACg           <  2:3005369/93‑1 (MQ=255)

                                                                             ttGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACg           <  1:991465/93‑1 (MQ=255)

                                                                                tgAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAc        <  1:3595537/93‑1 (MQ=255)

                                                                                tgAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAc        <  1:4057921/93‑1 (MQ=255)

                                                                                  aGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAg      <  2:486126/93‑1 (MQ=255)

                                                                                    tggtggCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGt    <  1:4232382/93‑1 (MQ=255)

                                                                                    tggtggCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGt    >  2:4284713/1‑93 (MQ=255)

                                                                                     ggtggcAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTa   <  1:5711572/93‑1 (MQ=255)

                                                                                      gtggcAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTaa  >  1:728749/1‑93 (MQ=255)

                                                                                      gtggcAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTaa  <  2:2621089/93‑1 (MQ=255)

CAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAA  >  NC_000913/2682765‑2682943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGCAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACC  >  NC_000913/2682762‑2682948

CGGCAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGC                                                                                               <  SRR4302537.3609283/94‑1 (MQ=60)

   CAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGT                                                                                            >  SRR4302537.4999425/1‑94 (MQ=60)

   CAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGT                                                                                            <  SRR4302537.844680/94‑1 (MQ=60)

   CAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGT                                                                                            <  SRR4302537.277139/94‑1 (MQ=60)

    AGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTA                                                                                           >  SRR4302537.2441883/1‑94 (MQ=60)

    AGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTA                                                                                           <  SRR4302537.3649362/94‑1 (MQ=60)

     GAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAA                                                                                          >  SRR4302537.3175547/1‑94 (MQ=60)

       GTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGAGCCGCCAGGGATTTGTGAGTGGTGGGAGTAACA                                                                                        >  SRR4302537.4517288/1‑94 (MQ=60)

       GTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACA                                                                                        <  SRR4302537.3702703/94‑1 (MQ=60)

        TTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAA                                                                                       >  SRR4302537.4409985/1‑94 (MQ=60)

        TTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAA                                                                                       >  SRR4302537.1756039/1‑94 (MQ=60)

          tgtTTTTTTGTACAGCTCTCCCCTCCCACCTTCCGCCAGGATCAGGCCGCC‑GCGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACG                                                                                     <  SRR4302537.4518254/91‑1 (MQ=60)

          CAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACG                                                                                     >  SRR4302537.1830765/1‑94 (MQ=60)

          CAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACG                                                                                     >  SRR4302537.5779098/1‑94 (MQ=60)

            GTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTG                                                                                   >  SRR4302537.3746101/1‑94 (MQ=60)

            GTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGGTTTGTGAGTGGTGGCAGTAACAACGTG                                                                                   >  SRR4302537.2827918/1‑94 (MQ=60)

            ATTTTTTGTACAGCTCTGCGCTCCCGCCTTTCGCCAGGATCGGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTG                                                                                   <  SRR4302537.5011282/94‑1 (MQ=60)

             TTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGGTTTGTGCGTGGTGGCAGTAACAACGTGA                                                                                  >  SRR4302537.3428046/1‑94 (MQ=60)

              TTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAG                                                                                 <  SRR4302537.1582527/94‑1 (MQ=60)

               TTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGC                                                                                <  SRR4302537.5087424/94‑1 (MQ=60)

               TTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGGTTTGTGAGTGGTGGCAGTAACAACGTGAGC                                                                                >  SRR4302537.5181281/1‑94 (MQ=60)

               TTTTGTACAGCTCTGCGCTACCGCCTTGCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGC                                                                                <  SRR4302537.3591480/94‑1 (MQ=60)

                 TTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCAT                                                                              >  SRR4302537.6143140/1‑94 (MQ=60)

                   GTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGA                                                                            >  SRR4302537.746410/1‑94 (MQ=60)

                    TACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAG                                                                           >  SRR4302537.3844718/1‑94 (MQ=60)

                    TACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAG                                                                           >  SRR4302537.1018775/1‑94 (MQ=60)

                    TACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAG                                                                           >  SRR4302537.3897833/1‑94 (MQ=60)

                    TACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAG                                                                           >  SRR4302537.3311675/1‑94 (MQ=60)

                     TCAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGAACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGG                                                                          <  SRR4302537.2861101/94‑1 (MQ=60)

                     ACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGG                                                                          <  SRR4302537.5907300/94‑1 (MQ=60)

                      CAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGATTTGTGAGTGGTGGCAGTTACAACGTGAGCATGAGGA                                                                         >  SRR4302537.2919630/1‑94 (MQ=60)

                       AGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAA                                                                        >  SRR4302537.6309832/1‑94 (MQ=60)

                       AGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAA                                                                        <  SRR4302537.5395942/94‑1 (MQ=60)

                        GCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAAC                                                                       <  SRR4302537.479226/94‑1 (MQ=60)

                        GCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGCTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAAC                                                                       >  SRR4302537.4089946/1‑94 (MQ=60)

                         CTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACC                                                                      >  SRR4302537.2622715/1‑94 (MQ=60)

                         CTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACC                                                                      <  SRR4302537.1925574/94‑1 (MQ=60)

                         CTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACC                                                                      >  SRR4302537.753859/1‑94 (MQ=60)

                          TCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCG                                                                     >  SRR4302537.6009293/1‑94 (MQ=60)

                            TTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGG                                                                   <  SRR4302537.4106863/94‑1 (MQ=60)

                            TTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGG                                                                   >  SRR4302537.5396851/1‑94 (MQ=60)

                            TTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGG                                                                   >  SRR4302537.341853/1‑94 (MQ=60)

                             TCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCCGGGGTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGCACCGGGT                                                                  >  SRR4302537.5724049/1‑94 (MQ=60)

                              CGCTACCCCCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTT                                                                 <  SRR4302537.2521553/94‑1 (MQ=60)

                              CGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTT                                                                 >  SRR4302537.2622540/1‑94 (MQ=60)

                              CGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTT                                                                 >  SRR4302537.3805611/1‑94 (MQ=60)

                               cctccccctttcCGCCAGGATCA‑GCCGCCGGCGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTC                                                                <  SRR4302537.3499083/82‑1 (MQ=60)

                               GCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTC                                                                >  SRR4302537.215457/1‑94 (MQ=60)

                               GCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGGTTTGTGAGTGGGGGCAGTAACAACGTGAGCATGAGGAGCCGGGTTC                                                                >  SRR4302537.6266879/1‑94 (MQ=60)

                                 TACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGG                                                              >  SRR4302537.1043057/1‑94 (MQ=60)

                                 TACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGCTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGCTCGG                                                              >  SRR4302537.810703/1‑94 (MQ=60)

                                   CCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGT                                                            >  SRR4302537.5724228/1‑94 (MQ=60)

                                    CACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTA                                                           >  SRR4302537.1287151/1‑94 (MQ=60)

                                     ACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAG                                                          >  SRR4302537.3889890/1‑94 (MQ=60)

                                     ACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAG                                                          >  SRR4302537.5081429/1‑94 (MQ=60)

                                     ACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAG                                                          >  SRR4302537.5124948/1‑94 (MQ=60)

                                     ACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCAAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAG                                                          >  SRR4302537.3143849/1‑94 (MQ=60)

                                       CTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGAC                                                        <  SRR4302537.5762225/94‑1 (MQ=60)

                                       CTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGAC                                                        <  SRR4302537.6489689/94‑1 (MQ=60)

                                        TTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACG                                                       >  SRR4302537.3557913/1‑94 (MQ=60)

                                         TTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGC                                                      >  SRR4302537.1747359/1‑94 (MQ=60)

                                           CGCCAGGATCAGGCCGCG‑GCGAGGTCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCA                                                    <  SRR4302537.1522941/94‑1 (MQ=60)

                                           CGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCA                                                    <  SRR4302537.1070543/94‑1 (MQ=60)

                                            GCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAGCGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAG                                                   >  SRR4302537.2562523/1‑94 (MQ=60)

                                            GCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAG                                                   <  SRR4302537.4279569/94‑1 (MQ=60)

                                            GCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAG                                                   >  SRR4302537.5436598/1‑94 (MQ=60)

                                            GCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGGGGACGCCAG                                                   >  SRR4302537.1295313/1‑94 (MQ=60)

                                            GCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTGCGGGTAGACGCCAG                                                   >  SRR4302537.2868927/1‑94 (MQ=60)

                                             CCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGC                                                  >  SRR4302537.4161791/1‑94 (MQ=60)

                                              CAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTGCGGGTAGACGCCAGCA                                                 >  SRR4302537.65574/1‑94 (MQ=60)

                                               AGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAG                                                <  SRR4302537.718828/94‑1 (MQ=60)

                                                GGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGC                                               <  SRR4302537.2531331/94‑1 (MQ=60)

                                                GGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGC                                               <  SRR4302537.3109941/94‑1 (MQ=60)

                                                  ATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAA                                             >  SRR4302537.275384/1‑94 (MQ=60)

                                                     gggcgGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCA                                          <  SRR4302537.2681135/89‑1 (MQ=60)

                                                     AGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCA                                          >  SRR4302537.2253806/1‑94 (MQ=60)

                                                     AGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCA                                          >  SRR4302537.2016167/1‑94 (MQ=60)

                                                     AGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCA                                          >  SRR4302537.1914240/1‑94 (MQ=60)

                                                     AGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCA                                          >  SRR4302537.5857719/1‑94 (MQ=60)

                                                      GGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAG                                         >  SRR4302537.6382471/1‑94 (MQ=60)

                                                      GGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAG                                         <  SRR4302537.384202/94‑1 (MQ=60)

                                                       GCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGG                                        <  SRR4302537.6459433/94‑1 (MQ=60)

                                                       GCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGC                                        >  SRR4302537.1658403/1‑94 (MQ=60)

                                                        CCGCC‑GCGCGGGCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGC                                       <  SRR4302537.2893130/94‑1 (MQ=60)

                                                        CCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGC                                       <  SRR4302537.2893129/94‑1 (MQ=60)

                                                         CGCC‑GCGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCC                                      <  SRR4302537.1087335/94‑1 (MQ=60)

                                                          GCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCC                                     <  SRR4302537.3104994/94‑1 (MQ=60)

                                                            C‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGC                                   >  SRR4302537.2868339/1‑94 (MQ=60)

                                                            C‑GCGCGGACCCGCCAGGGTGTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGC                                   <  SRR4302537.4328222/94‑1 (MQ=60)

                                                                  GGACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGT                              >  SRR4302537.4025600/1‑94 (MQ=60)

                                                                   GACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTG                             <  SRR4302537.4082421/94‑1 (MQ=60)

                                                                   GACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTG                             <  SRR4302537.2425363/94‑1 (MQ=60)

                                                                    ACCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGC                            <  SRR4302537.3871446/94‑1 (MQ=60)

                                                                     CCCGCCAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCG                           <  SRR4302537.1909574/94‑1 (MQ=60)

                                                                          CAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATA                      >  SRR4302537.4849274/1‑94 (MQ=60)

                                                                          CAGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATA                      <  SRR4302537.2957246/94‑1 (MQ=60)

                                                                           AGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATAT                     <  SRR4302537.4135839/94‑1 (MQ=60)

                                                                           AGGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATAT                     >  SRR4302537.5495663/1‑94 (MQ=60)

                                                                            GGGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATC                    <  SRR4302537.111735/94‑1 (MQ=60)

                                                                             GGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCA                   >  SRR4302537.460721/1‑94 (MQ=60)

                                                                             GGTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCA                   <  SRR4302537.2298055/94‑1 (MQ=60)

                                                                              GTTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAA                  <  SRR4302537.1876721/94‑1 (MQ=60)

                                                                               TTTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTGCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAAC                 <  SRR4302537.5482776/94‑1 (MQ=60)

                                                                                TTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACG                <  SRR4302537.573492/94‑1 (MQ=60)

                                                                                TTTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACG                <  SRR4302537.5338143/94‑1 (MQ=60)

                                                                                 TTGTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGA               <  SRR4302537.998314/94‑1 (MQ=60)

                                                                                   GTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAC             <  SRR4302537.5185361/94‑1 (MQ=60)

                                                                                   GTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAC             >  SRR4302537.4645338/1‑94 (MQ=60)

                                                                                   GTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAC             <  SRR4302537.5810472/94‑1 (MQ=60)

                                                                                   GTGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAC             >  SRR4302537.4227938/1‑94 (MQ=60)

                                                                                   GTGAGGGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAAC             >  SRR4302537.2896157/1‑94 (MQ=60)

                                                                                    TGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACA            <  SRR4302537.3620879/94‑1 (MQ=60)

                                                                                    TGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACA            <  SRR4302537.6365234/94‑1 (MQ=60)

                                                                                    TGAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACA            <  SRR4302537.4086275/94‑1 (MQ=60)

                                                                                     GAGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAG           <  SRR4302537.965506/94‑1 (MQ=60)

                                                                                      AGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGG          <  SRR4302537.6057304/94‑1 (MQ=60)

                                                                                      AGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGG          >  SRR4302537.1297197/1‑94 (MQ=60)

                                                                                      AGTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGG          <  SRR4302537.728062/94‑1 (MQ=60)

                                                                                       GTGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGT         <  SRR4302537.2441325/94‑1 (MQ=60)

                                                                                        TGGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTA        <  SRR4302537.4261840/94‑1 (MQ=60)

                                                                                         GGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAA       >  SRR4302537.733724/1‑94 (MQ=60)

                                                                                         GGTGGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAA       <  SRR4302537.5750663/94‑1 (MQ=60)

                                                                                            GGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCA    <  SRR4302537.277483/94‑1 (MQ=60)

                                                                                            GGCAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCA    <  SRR4302537.4796890/94‑1 (MQ=60)

                                                                                              CAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACC  >  SRR4302537.3460169/1‑94 (MQ=60)

                                                                                              CAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACAAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACC  >  SRR4302537.3991865/1‑94 (MQ=60)

CGGCAGAGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCC‑GCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACC  >  NC_000913/2682762‑2682948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`