Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,702,744	T→C	T196A (ACC→GCC)	lepB ←	leader peptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,702,744	0	T	C	100.0%	776.0 / NA	227	T196A (ACC→GCC)	lepB	leader peptidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/84); total (143/84)

Only 100 of 234 total aligned reads displayed.

CGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGTCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG  >  NC_000913/2702654‑2702833

cGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCt                                                                                         <  2:2825684/93‑1 (MQ=255)

 ggAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTg                                                                                        >  2:2308997/1‑93 (MQ=255)

  gAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGa                                                                                       >  2:3077432/1‑93 (MQ=255)

   aaaGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGaa                                                                                      <  2:2269956/93‑1 (MQ=255)

    aaGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAAc                                                                                     <  1:4823592/93‑1 (MQ=255)

     aGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACg                                                                                    >  2:774840/1‑93 (MQ=255)

     aGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACg                                                                                    >  1:1472459/1‑93 (MQ=255)

      gACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGGCTGAACGa                                                                                   >  2:5201854/1‑93 (MQ=255)

      gACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGa                                                                                   >  2:3744864/1‑93 (MQ=255)

      gACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGa                                                                                   <  2:17035/93‑1 (MQ=255)

         gAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAAt                                                                                <  2:2494226/93‑1 (MQ=255)

         gAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAAt                                                                                >  1:4791388/1‑93 (MQ=255)

          aaTTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCTCACCATTACGGCGTGAGAAGGCCTGAACGAAAta                                                                               >  1:3166930/1‑92 (MQ=255)

           aTTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCg                                                                              >  1:3336615/1‑93 (MQ=255)

           aTTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCg                                                                              <  2:4418847/93‑1 (MQ=255)

            ttCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGTGTGAGAAGGCCTGAACGAAATCGc                                                                             >  1:5507581/1‑93 (MQ=255)

            ttCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGc                                                                             <  1:1762098/93‑1 (MQ=255)

             tCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCt                                                                            >  2:5727892/1‑93 (MQ=255)

             tCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCt                                                                            <  2:4098076/93‑1 (MQ=255)

              ccATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTc                                                                           >  1:5319390/1‑93 (MQ=255)

               cATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCg                                                                          >  2:5349356/1‑93 (MQ=255)

                aTTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCgg                                                                         <  1:2901739/93‑1 (MQ=255)

                 ttttCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGt                                                                        >  2:4039027/1‑93 (MQ=255)

                 ttttCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGt                                                                        >  2:4280475/1‑93 (MQ=255)

                  tttCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGtt                                                                       >  2:2666053/1‑93 (MQ=255)

                  tttCTTTGGTTTCGTTTTTCGACTATTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGtt                                                                       <  2:3169252/93‑1 (MQ=255)

                   ttCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTc                                                                      >  1:3745142/1‑93 (MQ=255)

                   ttCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTc                                                                      >  1:1192719/1‑93 (MQ=255)

                    tCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTcc                                                                     >  2:4343902/1‑93 (MQ=255)

                      tttGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCAc                                                                   >  1:6327460/1‑93 (MQ=255)

                      tttGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCAc                                                                   <  1:4854553/93‑1 (MQ=255)

                       ttGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACg                                                                  >  2:1876356/1‑93 (MQ=255)

                       ttGGTTTCGTTTTTCCGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACg                                                                  <  1:978034/93‑1 (MQ=255)

                         ggTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGtt                                                                <  2:1089668/93‑1 (MQ=255)

                          gTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGttt                                                               <  1:3494721/93‑1 (MQ=255)

                          gTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGttt                                                               >  1:1702061/1‑93 (MQ=255)

                          gTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGtct                                                               >  1:4956365/1‑91 (MQ=255)

                           tttCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTg                                                              <  2:648719/93‑1 (MQ=255)

                           tttCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTg                                                              >  2:5232251/1‑93 (MQ=255)

                            ttCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGa                                                             >  1:158717/1‑93 (MQ=255)

                             tCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAg                                                            >  1:6413910/1‑93 (MQ=255)

                              cGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGt                                                           <  2:1772610/93‑1 (MQ=255)

                                 ttttCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAgg                                                        <  1:4149237/93‑1 (MQ=255)

                                 ttttCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAgg                                                        >  1:2142863/1‑93 (MQ=255)

                                  tttCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGt                                                       >  1:5366971/1‑93 (MQ=255)

                                   ttCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTg                                                      <  1:2339359/93‑1 (MQ=255)

                                       gCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTCAGTAGGTGACCg                                                  >  2:4669899/1‑93 (MQ=255)

                                         aCTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGc                                                >  1:2043385/1‑93 (MQ=255)

                                         aCTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGc                                                >  1:6076656/1‑93 (MQ=255)

                                          cTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCa                                               >  1:2622775/1‑93 (MQ=255)

                                            tCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAgg                                             >  2:387333/1‑92 (MQ=255)

                                            tCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAgc                                             >  1:2897307/1‑93 (MQ=255)

                                             cAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAgcg                                            >  2:3669607/1‑93 (MQ=255)

                                               aaGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGcgcg                                          >  1:1052146/1‑93 (MQ=255)

                                               aaGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGcgcg                                          >  2:2174582/1‑93 (MQ=255)

                                               aaGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGcgcg                                          >  1:2272852/1‑93 (MQ=255)

                                                 gAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGtt                                        >  2:6128455/1‑93 (MQ=255)

                                                 gAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGtt                                        >  2:4588311/1‑93 (MQ=255)

                                                  aaTCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGttt                                       >  1:764148/1‑93 (MQ=255)

                                                  aaTCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGttt                                       >  1:1168325/1‑93 (MQ=255)

                                                      cGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTcac                                   >  1:2574365/1‑93 (MQ=255)

                                                      cGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTcac                                   >  2:2731928/1‑93 (MQ=255)

                                                       gCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTcaca                                  >  1:5978141/1‑93 (MQ=255)

                                                       gCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTcaca                                  >  2:3399031/1‑93 (MQ=255)

                                                        cTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCacac                                 <  1:1436614/93‑1 (MQ=255)

                                                        cTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCacac                                 <  2:4936186/93‑1 (MQ=255)

                                                        cTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGCTTGAGTAGGTGACCGGCAGCGAGTTTTCacac                                 >  1:4627643/1‑93 (MQ=255)

                                                         tGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACg                                >  1:33886/1‑93 (MQ=255)

                                                         tGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACg                                <  1:5125546/93‑1 (MQ=255)

                                                          ggTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGc                               <  2:5188853/93‑1 (MQ=255)

                                                            gcGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCCCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCt                             <  1:3698896/92‑1 (MQ=255)

                                                             cGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTg                            <  2:327445/93‑1 (MQ=255)

                                                             cGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTg                            >  1:2504662/1‑93 (MQ=255)

                                                                 tCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCg                        >  2:3322863/1‑93 (MQ=255)

                                                                 tCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCg                        >  2:1925076/1‑93 (MQ=255)

                                                                 tCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCg                        <  1:1570057/93‑1 (MQ=255)

                                                                 tCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCATGGCCg                        >  2:1380456/1‑93 (MQ=255)

                                                                    ccaccaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGaa                     <  1:4440717/93‑1 (MQ=255)

                                                                    ccaccaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGaa                     >  2:488322/1‑93 (MQ=255)

                                                                     caccaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAAc                    <  2:6023526/93‑1 (MQ=255)

                                                                     caccaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAAc                    >  2:1279183/1‑93 (MQ=255)

                                                                      accaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACt                   >  1:199566/1‑93 (MQ=255)

                                                                      accaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACt                   >  2:1159782/1‑93 (MQ=255)

                                                                       ccaTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTg                  >  2:4308197/1‑93 (MQ=255)

                                                                        caTTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGc                 <  1:5047912/93‑1 (MQ=255)

                                                                         aTTACGGCGTGAGAAGACCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCa                <  1:3049087/93‑1 (MQ=255)

                                                                          ttACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGCACTGCAt               >  2:5069604/1‑93 (MQ=255)

                                                                          ttACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCAt               >  1:3408722/1‑93 (MQ=255)

                                                                          tgtcGGCGTCAGAAGGCCTGAACGAAAGCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCAt               <  1:6114133/90‑1 (MQ=255)

                                                                           tACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATc              <  1:4213160/93‑1 (MQ=255)

                                                                            aCGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATcc             <  1:4744053/93‑1 (MQ=255)

                                                                            aCGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATcc             <  1:3581834/93‑1 (MQ=255)

                                                                                cGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGt         >  2:2002383/1‑93 (MQ=255)

                                                                                cGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGt         <  1:4392420/93‑1 (MQ=255)

                                                                                 gTGAGAAGTCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGtt        <  1:2740196/93‑1 (MQ=255)

                                                                                 gTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGtt        <  2:5441905/93‑1 (MQ=255)

                                                                                  tGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTg       >  2:5933148/1‑93 (MQ=255)

                                                                                    agaAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGaa     >  2:4025580/1‑93 (MQ=255)

                                                                                       aGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCTGTTGAATCg  >  1:134909/1‑93 (MQ=255)

                                                                                       aGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCg  >  2:1653310/1‑93 (MQ=255)

CGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGTCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG  >  NC_000913/2702654‑2702833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGTCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTCAG  >  NC_000913/2702651‑2702837

GCTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGC                                                                                               >  SRR4302537.2139637/1‑94 (MQ=60)

 CTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCC                                                                                              >  SRR4302537.103082/1‑94 (MQ=60)

 CTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCC                                                                                              >  SRR4302537.3311083/1‑94 (MQ=60)

 CTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCC                                                                                              >  SRR4302537.1202402/1‑94 (MQ=60)

   CGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACTGCGTGAGAAGGCCTG                                                                                            >  SRR4302537.6403254/1‑94 (MQ=60)

     GAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAA                                                                                          <  SRR4302537.4202133/94‑1 (MQ=60)

     GAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAA                                                                                          <  SRR4302537.2423583/94‑1 (MQ=60)

      AAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAAC                                                                                         <  SRR4302537.5094536/94‑1 (MQ=60)

      AAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAAC                                                                                         <  SRR4302537.2620246/94‑1 (MQ=60)

       AAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACG                                                                                        <  SRR4302537.6129679/94‑1 (MQ=60)

       AAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACG                                                                                        <  SRR4302537.4856911/94‑1 (MQ=60)

       AAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACG                                                                                        >  SRR4302537.1482692/1‑94 (MQ=60)

          ACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAA                                                                                     >  SRR4302537.6346712/1‑94 (MQ=60)

           CGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAAT                                                                                    >  SRR4302537.4824460/1‑94 (MQ=60)

            GAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCTCACCATTACGGCGTGAGAAGGCCTGAACGAAATA                                                                                   >  SRR4302537.3189176/1‑94 (MQ=60)

            GAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATC                                                                                   >  SRR4302537.6511635/1‑94 (MQ=60)

             AATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCG                                                                                  >  SRR4302537.3360232/1‑94 (MQ=60)

              ATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGTGTGAGAAGGCCTGAACGAAATCGC                                                                                 >  SRR4302537.5545195/1‑94 (MQ=60)

               TTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCT                                                                                >  SRR4302537.118951/1‑94 (MQ=60)

               TTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCT                                                                                <  SRR4302537.2832209/94‑1 (MQ=60)

               TTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCT                                                                                <  SRR4302537.1774375/94‑1 (MQ=60)

                TCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTC                                                                               >  SRR4302537.5355904/1‑94 (MQ=60)

                 CCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCG                                                                              <  SRR4302537.2757280/94‑1 (MQ=60)

                   ATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGT                                                                            <  SRR4302537.2922124/94‑1 (MQ=60)

                     TTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTC                                                                          >  SRR4302537.1201002/1‑94 (MQ=60)

                     TTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTC                                                                          >  SRR4302537.3771440/1‑94 (MQ=60)

                      TTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCC                                                                         >  SRR4302537.3038231/1‑94 (MQ=60)

                       TCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCA                                                                        <  SRR4302537.3579777/94‑1 (MQ=60)

                        CTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCAC                                                                       >  SRR4302537.6370735/1‑94 (MQ=60)

                        CTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCAC                                                                       >  SRR4302537.165009/1‑94 (MQ=60)

                         TTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACG                                                                      <  SRR4302537.4888045/94‑1 (MQ=60)

                          TTGGTTTCGTTTTTCCGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGT                                                                     <  SRR4302537.984782/94‑1 (MQ=60)

                            GGTTTCGTTTTTCGGCACTTCAAAGAATCCGGTGGTCGCTTCCCCACCATTACGGCGGGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTT                                                                   <  SRR4302537.6073518/94‑1 (MQ=60)

                            GGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTT                                                                   >  SRR4302537.1713960/1‑94 (MQ=60)

                            GGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTT                                                                   >  SRR4302537.4990539/1‑94 (MQ=60)

                            GGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTT                                                                   >  SRR4302537.5840945/1‑94 (MQ=60)

                            GGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTCT                                                                   >  SRR4302537.4990538/1‑94 (MQ=60)

                             GTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTG                                                                  <  SRR4302537.3519445/94‑1 (MQ=60)

                              TTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGA                                                                 >  SRR4302537.4134138/1‑94 (MQ=60)

                              TTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGA                                                                 >  SRR4302537.159845/1‑94 (MQ=60)

                               TTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGTCCTGAACGAAATCGCTCGGTTCCACGTTTGAT                                                                >  SRR4302537.4799420/1‑94 (MQ=60)

                               TTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAG                                                                >  SRR4302537.6457536/1‑94 (MQ=60)

                                 CGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTA                                                              >  SRR4302537.3514194/1‑94 (MQ=60)

                                 CGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTA                                                              <  SRR4302537.1102642/94‑1 (MQ=60)

                                  GTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAG                                                             >  SRR4302537.2566385/1‑94 (MQ=60)

                                  GTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAG                                                             >  SRR4302537.3560823/1‑94 (MQ=60)

                                  GTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAG                                                             >  SRR4302537.5395128/1‑94 (MQ=60)

                                   TTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGG                                                            >  SRR4302537.2157939/1‑94 (MQ=60)

                                    TTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGT                                                           <  SRR4302537.4178200/94‑1 (MQ=60)

                                    TTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGT                                                           <  SRR4302537.2053221/94‑1 (MQ=60)

                                    TTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGT                                                           >  SRR4302537.5403695/1‑94 (MQ=60)

                                      TTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGA                                                         >  SRR4302537.5313686/1‑94 (MQ=60)

                                      TTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGA                                                         <  SRR4302537.2355846/94‑1 (MQ=60)

                                      TTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGA                                                         <  SRR4302537.4918108/94‑1 (MQ=60)

                                         GGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCG                                                      <  SRR4302537.3742639/94‑1 (MQ=60)

                                          GCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGG                                                     >  SRR4302537.4788454/1‑94 (MQ=60)

                                           CACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGC                                                    >  SRR4302537.1582500/1‑94 (MQ=60)

                                           CACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGC                                                    >  SRR4302537.6118411/1‑94 (MQ=60)

                                           CACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGC                                                    >  SRR4302537.2166549/1‑94 (MQ=60)

                                           CACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGC                                                    >  SRR4302537.2057684/1‑94 (MQ=60)

                                            CCTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCA                                                   <  SRR4302537.486034/94‑1 (MQ=60)

                                            ACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCA                                                   >  SRR4302537.2641153/1‑94 (MQ=60)

                                             CTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAG                                                  >  SRR4302537.6476147/1‑94 (MQ=60)

                                              TTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGC                                                 >  SRR4302537.2917644/1‑94 (MQ=60)

                                               TCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCG                                                <  SRR4302537.1767909/94‑1 (MQ=60)

                                                CAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGC                                               >  SRR4302537.444381/1‑94 (MQ=60)

                                                 AAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCG                                              >  SRR4302537.2288903/1‑94 (MQ=60)

                                                 AAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCG                                              >  SRR4302537.1059404/1‑94 (MQ=60)

                                                   AGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTT                                            >  SRR4302537.4749902/1‑94 (MQ=60)

                                                    GAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTT                                           >  SRR4302537.310530/1‑94 (MQ=60)

                                                    GAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTT                                           >  SRR4302537.769375/1‑94 (MQ=60)

                                                    GAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTT                                           >  SRR4302537.1176452/1‑94 (MQ=60)

                                                     AATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTT                                          >  SRR4302537.3385420/1‑94 (MQ=60)

                                                      ATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTC                                         >  SRR4302537.2670176/1‑94 (MQ=60)

                                                        CCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCAC                                       >  SRR4302537.4597380/1‑94 (MQ=60)

                                                        CCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCAC                                       >  SRR4302537.5178679/1‑94 (MQ=60)

                                                        CCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCAC                                       >  SRR4302537.3283/1‑94 (MQ=60)

                                                        CCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCAC                                       <  SRR4302537.4452473/94‑1 (MQ=60)

                                                        CCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCAC                                       >  SRR4302537.2592388/1‑94 (MQ=60)

                                                         CGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACA                                      >  SRR4302537.6019178/1‑94 (MQ=60)

                                                         CGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACA                                      >  SRR4302537.1466842/1‑94 (MQ=60)

                                                         CGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACA                                      >  SRR4302537.820166/1‑94 (MQ=60)

                                                          GCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGCTTGAGTAGGTGACCGGCAGCGAGTTTTCACAC                                     >  SRR4302537.4659662/1‑94 (MQ=60)

                                                           CTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACG                                    <  SRR4302537.1446603/94‑1 (MQ=60)

                                                           CTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACG                                    >  SRR4302537.3386753/1‑94 (MQ=60)

                                                           CTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACG                                    <  SRR4302537.1422798/94‑1 (MQ=60)

                                                           CTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACG                                    >  SRR4302537.34155/1‑94 (MQ=60)

                                                            TGGTCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGC                                   <  SRR4302537.5160868/94‑1 (MQ=60)

                                                               TCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTG                                >  SRR4302537.2522282/1‑94 (MQ=60)

                                                               GCGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCCCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTG                                <  SRR4302537.3724923/94‑1 (MQ=60)

                                                                CGCTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGG                               >  SRR4302537.1505204/1‑94 (MQ=60)

                                                                  CTTCCCCACCATTACGGCGTGAGGAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGTC                             >  SRR4302537.5718884/1‑94 (MQ=60)

                                                                  CTTCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGCAGGTGACCGGCACCGCGGTTTAACAAGCCTGGCC                             >  SRR4302537.2379548/1‑94 (MQ=60)

                                                                    TCCCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGG                           <  SRR4302537.1581013/94‑1 (MQ=60)

                                                                      CCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAA                         >  SRR4302537.1250377/1‑94 (MQ=60)

                                                                      CCCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAA                         >  SRR4302537.2108195/1‑94 (MQ=60)

                                                                       CCACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAAC                        <  SRR4302537.4471384/94‑1 (MQ=60)

                                                                        CACCATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACT                       >  SRR4302537.200989/1‑94 (MQ=60)

                                                                           CATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCA                    <  SRR4302537.2104020/94‑1 (MQ=60)

                                                                           CATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCA                    <  SRR4302537.5082672/94‑1 (MQ=60)

                                                                            ATTACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCAT                   >  SRR4302537.3432871/1‑94 (MQ=60)

                                                                            ATTACGGCGTGAGAAGACCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCAT                   <  SRR4302537.3070335/94‑1 (MQ=60)

                                                                             tgtCGGCGTCAGAAGGCCTGAACGAAAGCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATC                  <  SRR4302537.6156147/91‑1 (MQ=60)

                                                                              TACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCC                 <  SRR4302537.4970361/94‑1 (MQ=60)

                                                                              TACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCC                 <  SRR4302537.4242544/94‑1 (MQ=60)

                                                                               ACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCC                <  SRR4302537.3607083/94‑1 (MQ=60)

                                                                               ACGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCC                <  SRR4302537.4776833/94‑1 (MQ=60)

                                                                                CGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGTAACTGCATCCCG               >  SRR4302537.3788878/1‑94 (MQ=60)

                                                                                CGGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCG               <  SRR4302537.2313230/94‑1 (MQ=60)

                                                                                 GGCGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCTGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGG              >  SRR4302537.124995/1‑94 (MQ=60)

                                                                                   CGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTT            <  SRR4302537.4397559/94‑1 (MQ=60)

                                                                                   CGTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTT            <  SRR4302537.4422728/94‑1 (MQ=60)

                                                                                    GTGAGAAGTCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTG           <  SRR4302537.2759316/94‑1 (MQ=60)

                                                                                    GTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTG           >  SRR4302537.3427014/1‑94 (MQ=60)

                                                                                    GTGAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTG           >  SRR4302537.1982713/1‑94 (MQ=60)

                                                                                     TGAGAAGGCCTGACCGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGA          <  SRR4302537.3633929/94‑1 (MQ=60)

                                                                                      GAGAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAA         >  SRR4302537.1772105/1‑94 (MQ=60)

                                                                                        GAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATC       >  SRR4302537.2928836/1‑94 (MQ=60)

                                                                                        GAAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATC       <  SRR4302537.1521157/94‑1 (MQ=60)

                                                                                         AAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCTGTTGAATCG      >  SRR4302537.135870/1‑94 (MQ=60)

                                                                                         AAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG      >  SRR4302537.2919330/1‑94 (MQ=60)

                                                                                         AAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG      <  SRR4302537.6356986/94‑1 (MQ=60)

                                                                                         AAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG      >  SRR4302537.484210/1‑94 (MQ=60)

                                                                                         AAGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCG      <  SRR4302537.5468001/94‑1 (MQ=60)

                                                                                          AGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGT     >  SRR4302537.3412920/1‑94 (MQ=60)

                                                                                          AGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGT     >  SRR4302537.6427916/1‑94 (MQ=60)

                                                                                          AGGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGT     >  SRR4302537.4821899/1‑94 (MQ=60)

                                                                                           GGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTC    >  SRR4302537.6322695/1‑94 (MQ=60)

                                                                                           GGCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTC    <  SRR4302537.5584353/94‑1 (MQ=60)

                                                                                            GCCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTCA   <  SRR4302537.4121832/94‑1 (MQ=60)

                                                                                             CCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTCAG  <  SRR4302537.170711/94‑1 (MQ=60)

GCTCGGAAAGACGAATTCCATTTTCTTTGGTTTCGTTTTTCGGCACTTCAAAGAATCCGCTGGTCGCTTCCCCACCATTACGGCGTGAGAAGGTCTGAACGAAATCGCTCGGTTCCACGTTTGAGTAGGTGACCGGCAGCGCGTTTTCACACGCCTGGCCGGAACTGCATCCCGGTTGAATCGTCAG  >  NC_000913/2702651‑2702837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`