Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,723,618 T→C H50R (CAC→CGC)  kgtP ← alpha‑ketoglutarate permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,723,6180TC100.0% 791.6 / NA 225H50R (CAC→CGC) kgtPalpha‑ketoglutarate permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (124/101);  total (124/101)

Only 100 of 228 total aligned reads displayed.

CCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATG  >  NC_000913/2723528‑2723707
                                                                                          |                                                                                         
ccGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCgg                                                                                         <  2:2165407/93‑1 (MQ=255)
   ccTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCa                                                                                      >  2:4961115/1‑93 (MQ=255)
    cTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCaa                                                                                     >  1:1072827/1‑93 (MQ=255)
    cTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCaa                                                                                     >  1:1412676/1‑93 (MQ=255)
    cTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCaa                                                                                     >  1:459770/1‑93 (MQ=255)
      aTTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAg                                                                                   <  2:154340/93‑1 (MQ=255)
       ttGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGTGAAGAAGATGCGGGCAAAGt                                                                                  <  1:4333687/93‑1 (MQ=255)
       ttGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGt                                                                                  <  2:4771798/93‑1 (MQ=255)
       ttGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGt                                                                                  <  2:5764398/93‑1 (MQ=255)
       ttGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGt                                                                                  <  1:3667842/93‑1 (MQ=255)
       ttGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGt                                                                                  >  1:5725367/1‑93 (MQ=255)
          ggCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTaga                                                                               <  2:1028996/93‑1 (MQ=255)
          ggCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTaga                                                                               <  1:3844714/93‑1 (MQ=255)
          ggCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTaga                                                                               <  2:4388418/93‑1 (MQ=255)
           gcgcATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTagag                                                                              >  2:2554897/1‑93 (MQ=255)
            cgcATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGt                                                                             <  1:1783009/93‑1 (MQ=255)
             gcATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTg                                                                            <  1:6135707/93‑1 (MQ=255)
             gcATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTg                                                                            >  2:5595047/1‑93 (MQ=255)
             gcATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTg                                                                            >  1:2384197/1‑93 (MQ=255)
              cATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGa                                                                           >  1:3922830/1‑93 (MQ=255)
                tCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAAc                                                                         >  2:5229876/1‑93 (MQ=255)
                tCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAAc                                                                         <  1:5689431/93‑1 (MQ=255)
                 cAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACa                                                                        <  1:5030553/93‑1 (MQ=255)
                 cAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACa                                                                        <  2:1898358/93‑1 (MQ=255)
                   ggAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGa                                                                      <  2:3073506/93‑1 (MQ=255)
                   ggAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGa                                                                      >  2:3927664/1‑93 (MQ=255)
                    gAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGaa                                                                     <  1:5299617/93‑1 (MQ=255)
                    gAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGaa                                                                     >  2:4354034/1‑93 (MQ=255)
                    gAATCCCGCAGCAAAAACACCTGCTGTTTGGAGTAGTTGAGTCGTCGTGTTCCCGGTAGGGAAGAAGAGGCGGGGAAAGTAGAGTGAACaaaa                                                                     >  2:4517826/1‑93 (MQ=255)
                     aaTCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAAc                                                                    >  2:5357915/1‑93 (MQ=255)
                      aTCCTGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACg                                                                   >  2:2432510/1‑93 (MQ=255)
                       tCCCGCAGCAAAAACACTTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGa                                                                  <  2:2617130/93‑1 (MQ=255)
                       tCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGa                                                                  <  1:1462198/93‑1 (MQ=255)
                       tCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGa                                                                  >  2:3885086/1‑93 (MQ=255)
                        cccGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAg                                                                 <  1:2947614/93‑1 (MQ=255)
                         ccGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGt                                                                <  2:5038847/93‑1 (MQ=255)
                         ccGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGt                                                                <  2:4315239/93‑1 (MQ=255)
                         ccGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGt                                                                >  1:3588531/1‑93 (MQ=255)
                          cggcgcaAAAACCCCTGCTGTGTGGAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTa                                                               <  1:446814/89‑1 (MQ=255)
                            cagcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGCAGa                                                             >  2:625061/1‑93 (MQ=255)
                             agcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGAc                                                            <  1:4721740/93‑1 (MQ=255)
                             agcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGAc                                                            >  1:3090791/1‑93 (MQ=255)
                              gcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACa                                                           >  2:552820/1‑93 (MQ=255)
                              gcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACa                                                           >  2:664187/1‑93 (MQ=255)
                              gcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACa                                                           <  1:1037489/93‑1 (MQ=255)
                              gcaAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACa                                                           >  2:4753388/1‑93 (MQ=255)
                               caAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACAt                                                          >  2:5974478/1‑93 (MQ=255)
                               caAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACAt                                                          <  2:2957271/93‑1 (MQ=255)
                                aaaaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATa                                                         >  1:4862959/1‑93 (MQ=255)
                                aaaaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATa                                                         <  1:2284091/93‑1 (MQ=255)
                                aaaaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATa                                                         >  1:3770953/1‑93 (MQ=255)
                                 aaaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAg                                                        <  1:3747652/93‑1 (MQ=255)
                                 aaaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAg                                                        <  2:1641952/93‑1 (MQ=255)
                                  aaaCACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGa                                                       <  1:5729700/93‑1 (MQ=255)
                                   aaCACCTGCTGTTTGTGGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGaa                                                      >  1:743036/1‑93 (MQ=255)
                                    acacCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGaaa                                                     <  1:2789557/93‑1 (MQ=255)
                                       ccTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCg                                                  <  2:2882850/93‑1 (MQ=255)
                                         tgctgTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGaa                                                >  1:3175395/1‑93 (MQ=255)
                                           ctgTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAAcc                                              >  2:4470017/1‑93 (MQ=255)
                                           ctgTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAAcc                                              >  1:901710/1‑93 (MQ=255)
                                           ctgTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAAcc                                              >  1:846350/1‑93 (MQ=255)
                                            tgTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCa                                             >  1:4895066/1‑93 (MQ=255)
                                             gTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCAc                                            <  1:1330485/93‑1 (MQ=255)
                                             gTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCAc                                            >  1:35743/1‑93 (MQ=255)
                                              tttGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACt                                           >  2:3215932/1‑93 (MQ=255)
                                               ttGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGCGAACAGAACGAGTAGACATAGAAATCGAACCACTc                                          >  2:2481099/1‑93 (MQ=255)
                                                 gtagtaGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCgc                                        >  2:1720482/1‑92 (MQ=255)
                                                 gtagtaGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGa                                        >  1:2207981/1‑93 (MQ=255)
                                                  tagtagTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGAc                                       >  2:5433546/1‑93 (MQ=255)
                                                   agtagtTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGGcc                                      >  1:50605/1‑93 (MQ=255)
                                                    gtagtTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCa                                     >  2:1977511/1‑93 (MQ=255)
                                                     tagtTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAg                                    >  2:1372710/1‑93 (MQ=255)
                                                     tagtTGAGTCGTCGTGTTCCCCGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGCGTAGACATAGAAATCGAACCACTCGAcccg                                    >  1:255088/1‑91 (MQ=255)
                                                      agtTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGa                                   <  1:1804420/93‑1 (MQ=255)
                                                        ttGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGAtt                                 <  2:514447/93‑1 (MQ=255)
                                                        ttGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGAtt                                 <  1:1532765/93‑1 (MQ=255)
                                                           aGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTAcc                              <  2:1019762/93‑1 (MQ=255)
                                                           aGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTAcc                              <  1:4229932/93‑1 (MQ=255)
                                                            gtcgtcGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCt                             >  2:1341783/1‑93 (MQ=255)
                                                             tcgtcgTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTg                            >  2:4675857/1‑93 (MQ=255)
                                                               gtcgtGTTCGCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGaa                          <  1:3328365/93‑1 (MQ=255)
                                                               gtcgtGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGaa                          >  2:166606/1‑93 (MQ=255)
                                                                   tgtTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAgg                      <  1:1858725/93‑1 (MQ=255)
                                                                   tgtTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAgg                      >  2:2967432/1‑93 (MQ=255)
                                                                    gtTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGc                     >  1:3075819/1‑93 (MQ=255)
                                                                       cccGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGcccc                  <  2:2025968/93‑1 (MQ=255)
                                                                         cGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCca                >  2:860302/1‑93 (MQ=255)
                                                                           gaagggaagAAGATGCGGGCAAGGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCCCTCGACCAGATTACCTGAAGAGGCCCCcaca              <  2:6043490/93‑1 (MQ=255)
                                                                           gaagggaagAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCcaca              >  1:1294333/1‑93 (MQ=255)
                                                                           gaagggaagAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGGAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCcaca              >  2:4061631/1‑93 (MQ=255)
                                                                             agggaagAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAAt            >  2:6106471/1‑93 (MQ=255)
                                                                              gggaagAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATc           >  2:4890111/1‑93 (MQ=255)
                                                                                gaagaaGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGc         >  2:2701430/1‑93 (MQ=255)
                                                                                 aagaagATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGCGGCACCCACAATCGcc        >  1:1485446/1‑93 (MQ=255)
                                                                                 aagaagATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGcc        >  2:5926120/1‑93 (MQ=255)
                                                                                   gaagaTGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCa      >  2:1701241/1‑93 (MQ=255)
                                                                                    aagaTGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCaa     >  1:628327/1‑93 (MQ=255)
                                                                                     agaTGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCaaa    <  1:2911805/93‑1 (MQ=255)
                                                                                      gaTGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAAt   <  2:3250267/93‑1 (MQ=255)
                                                                                       aTGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATg  >  1:541418/1‑93 (MQ=255)
                                                                                          |                                                                                         
CCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATG  >  NC_000913/2723528‑2723707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGC  >  NC_000913/2723525‑2723711
                                                                                             |                                                                                             
CAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGC                                                                                               >  SRR4302537.2087233/1‑94 (MQ=60)
CAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGC                                                                                               <  SRR4302537.4428588/94‑1 (MQ=60)
CAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGC                                                                                               >  SRR4302537.5047527/1‑94 (MQ=60)
 AACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCG                                                                                              <  SRR4302537.5347138/94‑1 (MQ=60)
  ACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGG                                                                                             <  SRR4302537.6134588/94‑1 (MQ=60)
  ACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGG                                                                                             <  SRR4302537.1984478/94‑1 (MQ=60)
    ctcctattggggtcactAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGC                                                                                           <  SRR4302537.2459189/77‑1 (MQ=60)
     GCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCA                                                                                          >  SRR4302537.1471835/1‑94 (MQ=60)
      CCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAA                                                                                         >  SRR4302537.1080220/1‑94 (MQ=60)
      CCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAA                                                                                         >  SRR4302537.1422510/1‑94 (MQ=60)
      CCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAA                                                                                         <  SRR4302537.1122422/94‑1 (MQ=60)
      CCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAA                                                                                         >  SRR4302537.462936/1‑94 (MQ=60)
      CCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAA                                                                                         <  SRR4302537.5777206/94‑1 (MQ=60)
         ATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGT                                                                                      >  SRR4302537.5764558/1‑94 (MQ=60)
         ATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGT                                                                                      >  SRR4302537.5287660/1‑94 (MQ=60)
          TTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGTGAAGAAGATGCGGGCAAAGTA                                                                                     <  SRR4302537.4363788/94‑1 (MQ=60)
          TTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTA                                                                                     <  SRR4302537.3693655/94‑1 (MQ=60)
             GGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAG                                                                                  <  SRR4302537.3871636/94‑1 (MQ=60)
               CGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTG                                                                                >  SRR4302537.2400992/1‑94 (MQ=60)
               CGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTG                                                                                >  SRR4302537.1817849/1‑94 (MQ=60)
               CGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTG                                                                                <  SRR4302537.1795442/94‑1 (MQ=60)
               CGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTG                                                                                >  SRR4302537.1417265/1‑94 (MQ=60)
                GCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGA                                                                               >  SRR4302537.3950241/1‑94 (MQ=60)
                GCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGA                                                                               <  SRR4302537.6177888/94‑1 (MQ=60)
                  ATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGGAGAGTGAAC                                                                             >  SRR4302537.4744404/1‑94 (MQ=60)
                   TCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACA                                                                            <  SRR4302537.5728347/94‑1 (MQ=60)
                    CAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAG                                                                           <  SRR4302537.5065189/94‑1 (MQ=60)
                    CAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAG                                                                           >  SRR4302537.1367981/1‑94 (MQ=60)
                     AGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGA                                                                          <  SRR4302537.4334770/94‑1 (MQ=60)
                     AGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGA                                                                          >  SRR4302537.6493916/1‑94 (MQ=60)
                       GAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAAC                                                                        <  SRR4302537.5336017/94‑1 (MQ=60)
                        AATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACG                                                                       <  SRR4302537.3100726/94‑1 (MQ=60)
                         ATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGA                                                                      <  SRR4302537.174654/94‑1 (MQ=60)
                         ATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGA                                                                      >  SRR4302537.3503226/1‑94 (MQ=60)
                          TCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAG                                                                     <  SRR4302537.3606595/94‑1 (MQ=60)
                          TCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAG                                                                     <  SRR4302537.1472370/94‑1 (MQ=60)
                           CCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGT                                                                    >  SRR4302537.3613828/1‑94 (MQ=60)
                           CCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGT                                                                    <  SRR4302537.2968304/94‑1 (MQ=60)
                            CCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTA                                                                   >  SRR4302537.935452/1‑94 (MQ=60)
                             cggcGCAAAAACCCCTGCTGTGTGGAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAG                                                                  <  SRR4302537.449915/90‑1 (MQ=60)
                              GCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGA                                                                 >  SRR4302537.2581418/1‑94 (MQ=60)
                               CAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGAC                                                                >  SRR4302537.3112349/1‑94 (MQ=60)
                                AGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTGGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACA                                                               <  SRR4302537.5768332/94‑1 (MQ=60)
                                AGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACA                                                               <  SRR4302537.4754381/94‑1 (MQ=60)
                                AGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACA                                                               <  SRR4302537.5693871/94‑1 (MQ=60)
                                 GCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACAT                                                              >  SRR4302537.801870/1‑94 (MQ=60)
                                 GCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACAT                                                              <  SRR4302537.1044631/94‑1 (MQ=60)
                                  CAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATA                                                             >  SRR4302537.3797424/1‑94 (MQ=60)
                                  CAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATA                                                             >  SRR4302537.4896510/1‑94 (MQ=60)
                                   AAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAG                                                            <  SRR4302537.2300204/94‑1 (MQ=60)
                                    AAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGA                                                           <  SRR4302537.3773971/94‑1 (MQ=60)
                                    AAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGA                                                           >  SRR4302537.2194275/1‑94 (MQ=60)
                                    AAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGA                                                           <  SRR4302537.463354/94‑1 (MQ=60)
                                    AAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGA                                                           >  SRR4302537.3522999/1‑94 (MQ=60)
                                     AAACACCTGCTGTTTGTGGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAA                                                          >  SRR4302537.748102/1‑94 (MQ=60)
                                     AAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAA                                                          <  SRR4302537.4448823/94‑1 (MQ=60)
                                     AAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAA                                                          <  SRR4302537.5740379/94‑1 (MQ=60)
                                     AAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAA                                                          <  SRR4302537.5768923/94‑1 (MQ=60)
                                      AACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAA                                                         <  SRR4302537.2908942/94‑1 (MQ=60)
                                       ACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAAT                                                        <  SRR4302537.2955268/94‑1 (MQ=60)
                                       ACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAAT                                                        <  SRR4302537.2809056/94‑1 (MQ=60)
                                        CACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATC                                                       >  SRR4302537.3186552/1‑94 (MQ=60)
                                        CACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATC                                                       <  SRR4302537.4128974/94‑1 (MQ=60)
                                         ACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCG                                                      <  SRR4302537.3779476/94‑1 (MQ=60)
                                           CTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAA                                                    >  SRR4302537.3197713/1‑94 (MQ=60)
                                            TGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAAC                                                   >  SRR4302537.5786937/1‑94 (MQ=60)
                                             GCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACC                                                  >  SRR4302537.907932/1‑94 (MQ=60)
                                             GCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACC                                                  >  SRR4302537.852148/1‑94 (MQ=60)
                                              CTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCA                                                 >  SRR4302537.4928864/1‑94 (MQ=60)
                                              CTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCA                                                 >  SRR4302537.5017979/1‑94 (MQ=60)
                                               TGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCAC                                                >  SRR4302537.36019/1‑94 (MQ=60)
                                                GTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACT                                               <  SRR4302537.1339759/94‑1 (MQ=60)
                                                 TTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTC                                              <  SRR4302537.2995393/94‑1 (MQ=60)
                                                   TGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGA                                            >  SRR4302537.2223548/1‑94 (MQ=60)
                                                    GTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGAC                                           >  SRR4302537.3758715/1‑94 (MQ=60)
                                                     TAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGGCC                                          >  SRR4302537.50981/1‑94 (MQ=60)
                                                     TAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACC                                          >  SRR4302537.235639/1‑94 (MQ=60)
                                                       GTAGTTGAGTCGTCGTGTTCCCCGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGCGTAGACATAGAAATCGAACCACTCGACCCG                                        >  SRR4302537.256898/1‑94 (MQ=60)
                                                         AGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGAT                                      <  SRR4302537.1817013/94‑1 (MQ=60)
                                                           TTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTA                                    <  SRR4302537.4602019/94‑1 (MQ=60)
                                                           TTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTA                                    <  SRR4302537.1543476/94‑1 (MQ=60)
                                                            TGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGGGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTAC                                   >  SRR4302537.866403/1‑94 (MQ=60)
                                                             GAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACC                                  >  SRR4302537.509144/1‑94 (MQ=60)
                                                              AGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCT                                 <  SRR4302537.4259380/94‑1 (MQ=60)
                                                              AGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCT                                 >  SRR4302537.1712908/1‑94 (MQ=60)
                                                              AGTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCT                                 <  SRR4302537.5367979/94‑1 (MQ=60)
                                                               GTCGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTG                                <  SRR4302537.3827687/94‑1 (MQ=60)
                                                                 CGTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAA                              >  SRR4302537.3909845/1‑94 (MQ=60)
                                                                  GTCGTGTTCGCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAG                             <  SRR4302537.3351918/94‑1 (MQ=60)
                                                                  GTCGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAG                             <  SRR4302537.1057857/94‑1 (MQ=60)
                                                                    CGTGTTCCCGGAAGTGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAG                           <  SRR4302537.5056420/94‑1 (MQ=60)
                                                                    CGTGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAG                           >  SRR4302537.4853688/1‑94 (MQ=60)
                                                                      TGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGC                         <  SRR4302537.1871672/94‑1 (MQ=60)
                                                                      TGTTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGC                         >  SRR4302537.3097245/1‑94 (MQ=60)
                                                                        TTCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCC                       <  SRR4302537.1481855/94‑1 (MQ=60)
                                                                         TCCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCC                      <  SRR4302537.3215455/94‑1 (MQ=60)
                                                                          CCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCC                     <  SRR4302537.5669037/94‑1 (MQ=60)
                                                                          CCCGGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCC                     <  SRR4302537.3006336/94‑1 (MQ=60)
                                                                             GGAAGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACA                  >  SRR4302537.1303332/1‑94 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACCATC               >  SRR4302537.2242330/1‑94 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATC               <  SRR4302537.2625057/94‑1 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATC               >  SRR4302537.4085025/1‑94 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATC               >  SRR4302537.2085251/1‑94 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATC               >  SRR4302537.150711/1‑94 (MQ=60)
                                                                                AGGGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATC               >  SRR4302537.1797018/1‑94 (MQ=60)
                                                                                  GGAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGC             >  SRR4302537.6211935/1‑94 (MQ=60)
                                                                                   GAAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGCGGCACCCACAATCGCC            >  SRR4302537.1495782/1‑94 (MQ=60)
                                                                                    AAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCC           >  SRR4302537.4926536/1‑94 (MQ=60)
                                                                                    AAGAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCC           >  SRR4302537.880291/1‑94 (MQ=60)
                                                                                      GAAGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAA         >  SRR4302537.632604/1‑94 (MQ=60)
                                                                                        AGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAAT       >  SRR4302537.1308956/1‑94 (MQ=60)
                                                                                        AGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAAT       >  SRR4302537.3718861/1‑94 (MQ=60)
                                                                                        AGATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAAT       <  SRR4302537.2932260/94‑1 (MQ=60)
                                                                                         GATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATG      >  SRR4302537.3657041/1‑94 (MQ=60)
                                                                                         GATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATG      >  SRR4302537.545149/1‑94 (MQ=60)
                                                                                          ATGCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGC     >  SRR4302537.4490088/1‑94 (MQ=60)
                                                                                            GCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGG   <  SRR4302537.2124138/94‑1 (MQ=60)
                                                                                            GCGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGG   <  SRR4302537.5702957/94‑1 (MQ=60)
                                                                                             CGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGC  >  SRR4302537.639652/1‑94 (MQ=60)
                                                                                             CGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGC  <  SRR4302537.2809856/94‑1 (MQ=60)
                                                                                             |                                                                                             
CAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGC  >  NC_000913/2723525‑2723711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑