Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,810,863	T→C	V76A (GTC→GCC)	emrB →	EmrB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,810,863	0	T	C	99.6%	786.4 / NA	229	V76A (GTC→GCC)	emrB	EmrB
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (100/128); minor base G (1/0); total (101/128)
Fisher's exact test for biased strand distribution p-value = 4.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 246 total aligned reads displayed.

ATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGTCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGA  >  NC_000913/2810774‑2810952

aTCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCgg                                                                                        <  2:3312263/93‑1 (MQ=255)

aTCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCgg                                                                                        >  1:4074961/1‑93 (MQ=255)

aTCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCgg                                                                                        <  2:1618703/93‑1 (MQ=255)

aTCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCgg                                                                                        <  2:2474787/93‑1 (MQ=255)

  cGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCgggg                                                                                      <  1:88455/93‑1 (MQ=255)

   gCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGa                                                                                     >  2:4972677/1‑93 (MQ=255)

     tCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAg                                                                                   <  2:4001268/93‑1 (MQ=255)

     tCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAg                                                                                   <  1:1508468/93‑1 (MQ=255)

     tCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAg                                                                                   <  1:1747328/93‑1 (MQ=255)

      cAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGt                                                                                  <  1:429074/93‑1 (MQ=255)

       aGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCGGGGGCAggg                                                                                 >  1:1007388/1‑91 (MQ=255)

        gCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGGAGTGa                                                                                >  1:6144757/1‑93 (MQ=255)

        gCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGa                                                                                <  2:657124/93‑1 (MQ=255)

         ccAGGGAACGTGGGTAATCACTTCTTTCGGGGCGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCCGGCAAAGCGCCCCGGGGGAggcaa                                                                               >  2:4254434/1‑89 (MQ=255)

            gggAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACt                                                                            >  1:5431889/1‑93 (MQ=255)

            gggAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACt                                                                            >  1:310073/1‑93 (MQ=255)

            gggAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACt                                                                            >  1:1399209/1‑93 (MQ=255)

             ggAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTg                                                                           <  1:4707370/93‑1 (MQ=255)

              gAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGt                                                                          <  2:5141562/93‑1 (MQ=255)

               aaCGAGGGGAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGGAGCGAAACCGtt                                                                         >  2:2668451/1‑93 (MQ=255)

                 cGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTcc                                                                       >  2:3345231/1‑93 (MQ=255)

                 cGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTcc                                                                       <  2:3064221/93‑1 (MQ=255)

                   tGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGGCAAGCGCGCCGGGGGAGGGAGACTGTTTCtt                                                                     >  2:4410096/1‑93 (MQ=255)

                    gggTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCttt                                                                    >  2:621437/1‑93 (MQ=255)

                    gggTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAAGGAAACTGTTGCttt                                                                    >  2:357907/1‑93 (MQ=255)

                     ggTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTg                                                                   <  2:1941258/93‑1 (MQ=255)

                     ggTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTg                                                                   >  1:5315985/1‑93 (MQ=255)

                      gTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTgg                                                                  <  2:1707382/93‑1 (MQ=255)

                       tAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGt                                                                 <  2:1665704/93‑1 (MQ=255)

                         aTCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTcc                                                               <  1:5485844/93‑1 (MQ=255)

                         aTCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTcc                                                               >  2:5577509/1‑93 (MQ=255)

                         aTCACTGCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGTGCGCCGGGGAAGTGAAACTGTTCCTTTGGTcc                                                               <  2:2421527/93‑1 (MQ=255)

                          taaCTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTcca                                                              >  2:2011300/3‑93 (MQ=255)

                              ttcttTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCAt                                                          <  1:2088133/93‑1 (MQ=255)

                                  ttCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGcc                                                      >  2:2647144/1‑93 (MQ=255)

                                  ttCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGcc                                                      >  2:5666277/1‑93 (MQ=255)

                                      gggTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGGGCGCCGGGGAAGGGAAACTGTTCCTTTGGTCCACCATCGCCTTTg                                                  >  2:5354730/1‑93 (MQ=255)

                                      gggTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTg                                                  >  1:3750495/1‑93 (MQ=255)

                                       ggTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGc                                                 <  2:1516743/93‑1 (MQ=255)

                                       ggTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGc                                                 <  1:12390/93‑1 (MQ=255)

                                        gTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCt                                                <  1:620955/93‑1 (MQ=255)

                                         tGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGTGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTa                                               <  2:1048028/93‑1 (MQ=255)

                                         tGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTa                                               <  1:5109358/93‑1 (MQ=255)

                                         tGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTa                                               <  1:3275845/93‑1 (MQ=255)

                                         tGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTa                                               <  2:58621/93‑1 (MQ=255)

                                         tGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGAGCAACTGTTCCTTTGGTCCACCACCGCCTTTGCtg                                               >  2:1382218/1‑92 (MQ=255)

                                          ggCGAATGTCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTAt                                              >  2:155038/1‑93 (MQ=255)

                                          ggCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTAt                                              <  1:4381014/93‑1 (MQ=255)

                                          ggCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTAt                                              <  1:4168493/93‑1 (MQ=255)

                                            cGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTg                                            <  1:6460206/93‑1 (MQ=255)

                                            cGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAATGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTg                                            >  1:2722168/1‑93 (MQ=255)

                                              aaTGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcg                                          >  2:1975533/1‑93 (MQ=255)

                                              aaTGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcg                                          <  1:5670503/93‑1 (MQ=255)

                                               aTGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgt                                         <  1:362025/93‑1 (MQ=255)

                                               aTGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgt                                         <  1:4151966/93‑1 (MQ=255)

                                                tGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgtc                                        >  2:4248859/1‑93 (MQ=255)

                                                tGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgtc                                        >  2:5133048/1‑93 (MQ=255)

                                                 gCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgtcg                                       >  2:3675837/1‑93 (MQ=255)

                                                  ccATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgtcgt                                      <  2:5822914/93‑1 (MQ=255)

                                                  ccATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGcgtcgt                                      >  2:682775/1‑93 (MQ=255)

                                                   cATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTg                                     <  1:2645351/93‑1 (MQ=255)

                                                       tcGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCg                                 >  2:2926838/1‑93 (MQ=255)

                                                         gATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCgtg                               <  2:4439713/93‑1 (MQ=255)

                                                         gATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCgtg                               >  1:1474533/1‑93 (MQ=255)

                                                         gATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCgtg                               >  1:1689256/1‑93 (MQ=255)

                                                          aTCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCgtgg                              >  1:2238123/1‑92 (MQ=255)

                                                           tCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGtgtg                             >  1:4873016/1‑93 (MQ=255)

                                                           tCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGtgtg                             <  1:4525264/93‑1 (MQ=255)

                                                           tCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGtgtg                             <  1:1116455/93‑1 (MQ=255)

                                                            cccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtgg                            >  2:3830277/1‑93 (MQ=255)

                                                            cccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtgg                            <  1:1542187/93‑1 (MQ=255)

                                                            cccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtgg                            >  2:463491/1‑93 (MQ=255)

                                                            cccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtgg                            >  1:4920800/1‑93 (MQ=255)

                                                            cccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtgg                            <  1:129169/93‑1 (MQ=255)

                                                             ccGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtggt                           >  2:4219542/1‑93 (MQ=255)

                                                              cGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtggtg                          <  2:6349889/93‑1 (MQ=255)

                                                              cGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtggtg                          >  1:5622733/1‑93 (MQ=255)

                                                              cGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTgtggtg                          <  2:1279592/93‑1 (MQ=255)

                                                               gCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGGGTGgtgt                         >  1:6429220/1‑93 (MQ=255)

                                                               ccTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGgtgt                         <  1:5891671/92‑1 (MQ=255)

                                                                 ttACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGtct                       >  2:2809706/1‑93 (MQ=255)

                                                                 ttACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGtct                       >  1:2492117/1‑93 (MQ=255)

                                                                  tACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGtctc                      <  2:1185984/93‑1 (MQ=255)

                                                                   aCCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTcc                     >  2:1839643/1‑93 (MQ=255)

                                                                    ccGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTccg                    >  1:104366/1‑92 (MQ=255)

                                                                    ccGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCca                    >  2:6032481/1‑93 (MQ=255)

                                                                    ccGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCca                    <  1:434189/93‑1 (MQ=255)

                                                                     cGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCcag                   >  2:2177752/1‑93 (MQ=255)

                                                                       gctggctgGCAAAGCGCGCCGGGGAAGTGAAACTGTTCATTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCcagca                 >  2:5731897/1‑93 (MQ=255)

                                                                          ggctggcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGcc              <  1:1331515/93‑1 (MQ=255)

                                                                          ggctggcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGAGTGGTGTCTCCAGCAGcc              <  2:1434363/93‑1 (MQ=255)

                                                                            ctggcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTg            <  1:107979/93‑1 (MQ=255)

                                                                             tggcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGa           <  2:3877420/93‑1 (MQ=255)

                                                                               gcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAat         >  1:2756795/1‑93 (MQ=255)

                                                                               gcAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAat         <  2:3150138/93‑1 (MQ=255)

                                                                                cAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAata        <  1:5459361/93‑1 (MQ=255)

                                                                                cAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAata        <  1:1837512/93‑1 (MQ=255)

                                                                                 aaaGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAatat       >  1:4622636/1‑93 (MQ=255)

                                                                                    gcgcgcCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCt    <  1:6088612/93‑1 (MQ=255)

                                                                                      gcgcCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGa  >  2:392705/1‑93 (MQ=255)

ATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGTCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGA  >  NC_000913/2810774‑2810952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTCATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGTCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCTT  >  NC_000913/2810771‑2810956

CTCATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCCAAGCGCGCC                                                                                              >  SRR4302537.1627319/1‑94 (MQ=60)

CTCATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCC                                                                                              <  SRR4302537.25590/94‑1 (MQ=60)

CTCATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCC                                                                                              <  SRR4302537.782138/94‑1 (MQ=60)

  CATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGG                                                                                            >  SRR4302537.4103412/1‑94 (MQ=60)

   ATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGG                                                                                           <  SRR4302537.1504852/94‑1 (MQ=60)

    gcgcgCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGG                                                                                          <  SRR4302537.2504426/89‑1 (MQ=60)

    GCGCTCAGCGAGGGAACGTGGGTAATCACTTCTGTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGG                                                                                          <  SRR4302537.581777/94‑1 (MQ=60)

     CGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGA                                                                                         <  SRR4302537.89096/94‑1 (MQ=60)

       CTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAG                                                                                       >  SRR4302537.6060639/1‑94 (MQ=60)

        TCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGT                                                                                      <  SRR4302537.1759518/94‑1 (MQ=60)

        TCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGT                                                                                      <  SRR4302537.1519017/94‑1 (MQ=60)

         CAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTG                                                                                     <  SRR4302537.432064/94‑1 (MQ=60)

          AGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGGAGTGA                                                                                    >  SRR4302537.6187014/1‑94 (MQ=60)

          AGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGA                                                                                    <  SRR4302537.2751830/94‑1 (MQ=60)

          AGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGA                                                                                    <  SRR4302537.5611507/94‑1 (MQ=60)

           GCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAA                                                                                   <  SRR4302537.1296740/94‑1 (MQ=60)

           GCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAA                                                                                   <  SRR4302537.1531516/94‑1 (MQ=60)

             CAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAAC                                                                                 >  SRR4302537.3925249/1‑94 (MQ=60)

             CAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAAC                                                                                 >  SRR4302537.686986/1‑94 (MQ=60)

              AGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACT                                                                                >  SRR4302537.1408963/1‑94 (MQ=60)

              AGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACT                                                                                >  SRR4302537.5468937/1‑94 (MQ=60)

              AGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACT                                                                                >  SRR4302537.312219/1‑94 (MQ=60)

                GGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGT                                                                              <  SRR4302537.4739937/94‑1 (MQ=60)

                     GTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGGAGTGAAACTGTTCCTT                                                                         >  SRR4302537.4706957/1‑94 (MQ=60)

                     GTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTT                                                                         <  SRR4302537.2931023/94‑1 (MQ=60)

                     GTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGGGAAACTGTTCCTT                                                                         >  SRR4302537.4360995/1‑94 (MQ=60)

                      TGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTT                                                                        >  SRR4302537.3252329/1‑94 (MQ=60)

                       GGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTG                                                                       >  SRR4302537.5352490/1‑94 (MQ=60)

                          TAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTC                                                                    >  SRR4302537.1120925/1‑94 (MQ=60)

                          TAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTC                                                                    >  SRR4302537.1932782/1‑94 (MQ=60)

                           AATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCC                                                                   <  SRR4302537.617810/94‑1 (MQ=60)

                            ATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCA                                                                  <  SRR4302537.5523292/94‑1 (MQ=60)

                              CACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACC                                                                <  SRR4302537.2703321/94‑1 (MQ=60)

                                 TTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATC                                                             <  SRR4302537.2102861/94‑1 (MQ=60)

                                 TTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATC                                                             <  SRR4302537.1788476/94‑1 (MQ=60)

                                  TCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCG                                                            <  SRR4302537.5353162/94‑1 (MQ=60)

                                   CTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCAGCATCGC                                                           >  SRR4302537.6185290/1‑94 (MQ=60)

                                     TTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCT                                                         <  SRR4302537.1258171/94‑1 (MQ=60)

                                       CGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTT                                                       >  SRR4302537.1079716/1‑94 (MQ=60)

                                        GGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTG                                                      >  SRR4302537.1428268/1‑94 (MQ=60)

                                        GGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTG                                                      >  SRR4302537.3776833/1‑94 (MQ=60)

                                          GGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCT                                                    <  SRR4302537.12481/94‑1 (MQ=60)

                                           GTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTA                                                   <  SRR4302537.625185/94‑1 (MQ=60)

                                            TGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTAT                                                  <  SRR4302537.3298962/94‑1 (MQ=60)

                                            TGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTAT                                                  <  SRR4302537.5144564/94‑1 (MQ=60)

                                             GGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATT                                                 <  SRR4302537.4197611/94‑1 (MQ=60)

                                             GGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATT                                                 <  SRR4302537.4411252/94‑1 (MQ=60)

                                             GGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATT                                                 <  SRR4302537.781554/94‑1 (MQ=60)

                                              GCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTG                                                >  SRR4302537.1713185/1‑94 (MQ=60)

                                              GCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAATGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTG                                                >  SRR4302537.2741177/1‑94 (MQ=60)

                                               CGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGC                                               <  SRR4302537.6503984/94‑1 (MQ=60)

                                               CGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGC                                               <  SRR4302537.484026/94‑1 (MQ=60)

                                                GAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCG                                              <  SRR4302537.4404810/94‑1 (MQ=60)

                                                 AATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGT                                             <  SRR4302537.5709302/94‑1 (MQ=60)

                                                  ATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATTGCCTTTTCTATTGCGTC                                            >  SRR4302537.5808512/1‑94 (MQ=60)

                                                  ATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTC                                            <  SRR4302537.4180957/94‑1 (MQ=60)

                                                  ATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTC                                            <  SRR4302537.364541/94‑1 (MQ=60)

                                                     CCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCCTTGCTATTGCGTCGTG                                         >  SRR4302537.3670346/1‑94 (MQ=60)

                                                     CCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGGCCACCATCGCCTTTGCTATTGCGTCGTG                                         >  SRR4302537.1353849/1‑94 (MQ=60)

                                                      CATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGGCGGGGAAGTGAAACTGTTCCTTTGGACCACCATCGCCTTTGCTATTGCGTCGTGG                                        >  SRR4302537.4980220/1‑94 (MQ=60)

                                                      CATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGG                                        <  SRR4302537.4632159/94‑1 (MQ=60)

                                                      CATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGG                                        >  SRR4302537.6273066/1‑94 (MQ=60)

                                                      CATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGG                                        <  SRR4302537.2663853/94‑1 (MQ=60)

                                                       ATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGG                                       >  SRR4302537.1103417/1‑94 (MQ=60)

                                                       ATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGG                                       >  SRR4302537.2523991/1‑94 (MQ=60)

                                                        TCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTCTTGCGTCGTGGGC                                      >  SRR4302537.5479640/1‑94 (MQ=60)

                                                           CGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTG                                   >  SRR4302537.2725699/1‑94 (MQ=60)

                                                           CGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTG                                   >  SRR4302537.1484781/1‑94 (MQ=60)

                                                           CGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTG                                   >  SRR4302537.1403377/1‑94 (MQ=60)

                                                           CGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTG                                   >  SRR4302537.1701082/1‑94 (MQ=60)

                                                            GATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGT                                  >  SRR4302537.4408959/1‑94 (MQ=60)

                                                            GATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGG                                  >  SRR4302537.2253905/1‑94 (MQ=60)

                                                             ATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTG                                 >  SRR4302537.4906648/1‑94 (MQ=60)

                                                             ATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTG                                 <  SRR4302537.1999542/94‑1 (MQ=60)

                                                             ATCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTG                                 >  SRR4302537.4522290/1‑94 (MQ=60)

                                                             AGCCCGCTTACCGGCTGGCTGGCAAAGCGCGCAGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTG                                 <  SRR4302537.3863869/94‑1 (MQ=60)

                                                              TCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGG                                <  SRR4302537.1124179/94‑1 (MQ=60)

                                                              TCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGG                                <  SRR4302537.1632585/94‑1 (MQ=60)

                                                              TCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGG                                <  SRR4302537.4556574/94‑1 (MQ=60)

                                                              TCCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGG                                >  SRR4302537.4954743/1‑94 (MQ=60)

                                                               CCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGT                               <  SRR4302537.130086/94‑1 (MQ=60)

                                                               CCCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGT                               <  SRR4302537.1552951/94‑1 (MQ=60)

                                                                CCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTG                              >  SRR4302537.5661174/1‑94 (MQ=60)

                                                                CCGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTG                              >  SRR4302537.1324374/1‑94 (MQ=60)

                                                                 CGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGT                             >  SRR4302537.5030756/1‑94 (MQ=60)

                                                                 CGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGT                             >  SRR4302537.6472902/1‑94 (MQ=60)

                                                                 CGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGT                             >  SRR4302537.5072573/1‑94 (MQ=60)

                                                                 CGCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGGGTGGTGT                             >  SRR4302537.6472901/1‑94 (MQ=60)

                                                                  CCTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTC                            <  SRR4302537.5932097/94‑1 (MQ=60)

                                                                   CTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCT                           >  SRR4302537.1630469/1‑94 (MQ=60)

                                                                   CTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCT                           <  SRR4302537.6379319/94‑1 (MQ=60)

                                                                   CTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCT                           <  SRR4302537.1125847/94‑1 (MQ=60)

                                                                   CTTACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCT                           >  SRR4302537.2509665/1‑94 (MQ=60)

                                                                     TACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCC                         >  SRR4302537.1049485/1‑94 (MQ=60)

                                                                     TACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCC                         <  SRR4302537.4276940/94‑1 (MQ=60)

                                                                     TACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCC                         <  SRR4302537.2453193/94‑1 (MQ=60)

                                                                      ACCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCG                        >  SRR4302537.105118/1‑94 (MQ=60)

                                                                       CCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAG                       <  SRR4302537.4772120/94‑1 (MQ=60)

                                                                       CCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAG                       <  SRR4302537.2895850/94‑1 (MQ=60)

                                                                       CCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAG                       <  SRR4302537.3454159/94‑1 (MQ=60)

                                                                       CCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAG                       <  SRR4302537.557867/94‑1 (MQ=60)

                                                                       CCGGCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAG                       <  SRR4302537.437218/94‑1 (MQ=60)

                                                                          GCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAG                    <  SRR4302537.5451771/94‑1 (MQ=60)

                                                                          GCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAG                    <  SRR4302537.2232154/94‑1 (MQ=60)

                                                                          GCTGGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAG                    <  SRR4302537.5675251/94‑1 (MQ=60)

                                                                             GGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCT                 <  SRR4302537.1340794/94‑1 (MQ=60)

                                                                             GGCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTAGTGGGCGTGTGGTGTCTCCAGCAGCCT                 <  SRR4302537.4628705/94‑1 (MQ=60)

                                                                              GCTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTG                <  SRR4302537.4942018/94‑1 (MQ=60)

                                                                               CTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGA               <  SRR4302537.4280588/94‑1 (MQ=60)

                                                                               CTGGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGA               <  SRR4302537.108768/94‑1 (MQ=60)

                                                                                 GGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAAT             <  SRR4302537.4187739/94‑1 (MQ=60)

                                                                                 GGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAAT             <  SRR4302537.3423642/94‑1 (MQ=60)

                                                                                 GGCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAAT             >  SRR4302537.2776038/1‑94 (MQ=60)

                                                                                  GCAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATA            <  SRR4302537.4135288/94‑1 (MQ=60)

                                                                                   CAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATAT           >  SRR4302537.4654634/1‑94 (MQ=60)

                                                                                   CAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATAT           <  SRR4302537.5496602/94‑1 (MQ=60)

                                                                                   CAAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATAT           <  SRR4302537.1850304/94‑1 (MQ=60)

                                                                                    AAAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATG          >  SRR4302537.5512739/1‑94 (MQ=60)

                                                                                     AAGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGC         <  SRR4302537.5166912/94‑1 (MQ=60)

                                                                                      AGCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCT        >  SRR4302537.6191729/1‑94 (MQ=60)

                                                                                       GCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTG       <  SRR4302537.5886241/94‑1 (MQ=60)

                                                                                       GCGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTG       <  SRR4302537.6130440/94‑1 (MQ=60)

                                                                                        CGCGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGCCTCCAGCAGCCTGAATATGCTGA      <  SRR4302537.1502358/94‑1 (MQ=60)

                                                                                          CGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATC    <  SRR4302537.2854343/94‑1 (MQ=60)

                                                                                          CGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATC    >  SRR4302537.2735855/1‑94 (MQ=60)

                                                                                          CGCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATC    >  SRR4302537.5608186/1‑94 (MQ=60)

                                                                                           GCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATTGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTTCAGCAGCCTGAATATGCTGATCT   >  SRR4302537.1239801/1‑94 (MQ=60)

                                                                                           GCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCT   <  SRR4302537.2463963/94‑1 (MQ=60)

                                                                                           GCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCT   <  SRR4302537.5891301/94‑1 (MQ=60)

                                                                                           GCCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCT   <  SRR4302537.943617/94‑1 (MQ=60)

                                                                                            CCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCTT  <  SRR4302537.4673699/94‑1 (MQ=60)

                                                                                            CCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCTT  <  SRR4302537.1814955/94‑1 (MQ=60)

                                                                                            CCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCTT  <  SRR4302537.2871183/94‑1 (MQ=60)

CTCATCGCTCAGCCAGGGAACGTGGGTAATCACTTCTTTCGGGGTGGCGAATGCCATCTCGATCCCGCTTACCGGCTGGCTGGCAAAGCGCGTCGGGGAAGTGAAACTGTTCCTTTGGTCCACCATCGCCTTTGCTATTGCGTCGTGGGCGTGTGGTGTCTCCAGCAGCCTGAATATGCTGATCTT  >  NC_000913/2810771‑2810956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`