Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,865,029	T→C	A182A (GCA→GCG)	rpoS ←	sigma S factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,865,029	0	T	C	100.0%	796.1 / NA	228	A182A (GCA→GCG)	rpoS	sigma S factor
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (97/131); total (97/131)

Only 100 of 243 total aligned reads displayed.

CATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCG  >  NC_000913/2864939‑2865117

cATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACgcgc                                                                                        >  1:6295863/1‑93 (MQ=255)

 aTACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCAcgcgcg                                                                                       >  1:1322804/1‑93 (MQ=255)

   aCGGCTGACCTCCTCAACTGGCTTATCCAGTTTCTCTGCGATCTCTTCCGCACCTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGt                                                                                     <  1:1170020/93‑1 (MQ=255)

    cGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGtt                                                                                    <  1:71149/93‑1 (MQ=255)

     ggCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTc                                                                                   <  2:2398947/93‑1 (MQ=255)

        tGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCa                                                                                <  2:307384/93‑1 (MQ=255)

        tGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCa                                                                                <  2:5992486/93‑1 (MQ=255)

         gACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAg                                                                               >  1:934014/1‑93 (MQ=255)

             tcatcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTaa                                                                           >  1:4679866/1‑93 (MQ=255)

             tcatcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTaa                                                                           >  1:2797784/1‑93 (MQ=255)

              catcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTaaa                                                                          <  1:5543685/93‑1 (MQ=255)

               atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAAc                                                                         <  1:4195945/93‑1 (MQ=255)

               atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAAc                                                                         >  1:4242888/1‑93 (MQ=255)

                tcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACg                                                                        >  1:597886/1‑93 (MQ=255)

                 caACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGt                                                                       >  2:3586350/1‑93 (MQ=255)

                  aaCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGtt                                                                      >  1:5746074/1‑93 (MQ=255)

                  aaCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGtt                                                                      <  2:1241307/93‑1 (MQ=255)

                   aCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTc                                                                     <  1:4838239/93‑1 (MQ=255)

                   aCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTc                                                                     <  2:1280486/93‑1 (MQ=255)

                   aCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTc                                                                     <  2:1599762/93‑1 (MQ=255)

                   aCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTc                                                                     <  1:4636772/93‑1 (MQ=255)

                    cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCa                                                                    <  1:2010541/93‑1 (MQ=255)

                    cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGGTCGCAGGTAAACGTTCa                                                                    >  2:5927425/1‑93 (MQ=255)

                    cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGATCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCa                                                                    >  1:4021809/1‑93 (MQ=255)

                        cTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGTGGTTCGCAGGTAAACGCTCAGCTc                                                                >  1:3813274/1‑93 (MQ=255)

                        cTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTc                                                                >  2:3156090/1‑93 (MQ=255)

                         ttATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTcc                                                               >  1:4952828/1‑93 (MQ=255)

                           aTCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCtt                                                             <  1:225957/93‑1 (MQ=255)

                            cccAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCttt                                                            >  2:6205429/2‑93 (MQ=255)

                             ccAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTa                                                           <  1:3479738/93‑1 (MQ=255)

                             ccAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTa                                                           >  1:3708648/1‑93 (MQ=255)

                             ccAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTa                                                           <  2:4149307/93‑1 (MQ=255)

                               aGTTGCTCAGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACg                                                         >  2:6302424/1‑93 (MQ=255)

                                gTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGa                                                        >  1:2924096/1‑93 (MQ=255)

                                  tGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGAtg                                                      <  2:3704732/93‑1 (MQ=255)

                                  tGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGAtg                                                      <  1:5596779/93‑1 (MQ=255)

                                     tctGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGa                                                   <  2:2944616/93‑1 (MQ=255)

                                      ctGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGaa                                                  >  1:2965171/1‑93 (MQ=255)

                                       tGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAt                                                 <  2:5100176/93‑1 (MQ=255)

                                       tGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAt                                                 >  2:3426029/1‑93 (MQ=255)

                                       tGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAt                                                 >  1:1791870/1‑93 (MQ=255)

                                        gCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATc                                                >  1:155108/1‑93 (MQ=255)

                                        gCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATc                                                >  1:3685353/1‑93 (MQ=255)

                                          gATCTTTTCCGCACTTGCTTCATGGGCCAGATGATGGGACTACTCACGCGCGGTTCGCAGCTAAACGTTCAGCCCCTTTACGATGTGAATCgg                                              <  2:4881556/93‑1 (MQ=255)

                                          gATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCgg                                              >  2:2674613/1‑93 (MQ=255)

                                          gATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCgg                                              >  1:1014818/1‑93 (MQ=255)

                                            tctcTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCa                                            >  1:3088728/1‑93 (MQ=255)

                                            tctcTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCa                                            <  2:1763869/93‑1 (MQ=255)

                                            tctcTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCa                                            <  1:1629945/93‑1 (MQ=255)

                                            tctcTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCa                                            <  2:1506365/93‑1 (MQ=255)

                                             ctctTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCaa                                           <  1:2443511/93‑1 (MQ=255)

                                                   cGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAt                                     <  2:4441646/93‑1 (MQ=255)

                                                   cGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAt                                     <  2:348122/93‑1 (MQ=255)

                                                   cGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAt                                     >  1:4054769/1‑93 (MQ=255)

                                                   cGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAt                                     <  2:4669098/93‑1 (MQ=255)

                                                    ggaCTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATa                                    <  2:4785539/91‑1 (MQ=255)

                                                     cACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAg                                   <  2:714646/93‑1 (MQ=255)

                                                      aCTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGt                                  <  1:5192018/93‑1 (MQ=255)

                                                       cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGTAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTa                                 <  2:2116100/93‑1 (MQ=255)

                                                       cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTa                                 >  2:3948123/1‑93 (MQ=255)

                                                       cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTa                                 >  1:3179566/1‑93 (MQ=255)

                                                       cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTa                                 <  2:5308415/93‑1 (MQ=255)

                                                        ttGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTAc                                >  2:5764588/1‑93 (MQ=255)

                                                        ttGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTAc                                <  1:2893754/93‑1 (MQ=255)

                                                        ttGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTAc                                <  2:2555847/93‑1 (MQ=255)

                                                          ggTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACgg                              >  1:868018/1‑93 (MQ=255)

                                                          ggTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACgg                              <  2:224138/93‑1 (MQ=255)

                                                          ggTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACgg                              <  1:3889434/93‑1 (MQ=255)

                                                          ggTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACgg                              >  1:6160663/1‑93 (MQ=255)

                                                            ttCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGt                            >  2:5484160/1‑93 (MQ=255)

                                                            ttCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGt                            <  2:3883088/93‑1 (MQ=255)

                                                             tCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGtt                           >  1:2719373/1‑93 (MQ=255)

                                                              cATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttt                          <  2:3706930/93‑1 (MQ=255)

                                                              cATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttt                          <  2:5321644/93‑1 (MQ=255)

                                                              cATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttt                          <  1:3064926/93‑1 (MQ=255)

                                                               aTGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTg                         >  1:6342880/1‑93 (MQ=255)

                                                               aTGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTg                         >  1:5146363/1‑93 (MQ=255)

                                                                tGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTgg                        <  2:321252/93‑1 (MQ=255)

                                                                 ggTCCAGCTTATGGGACAACTNACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGt                       <  1:2422437/93‑1 (MQ=255)

                                                                 ggTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGt                       <  2:521163/93‑1 (MQ=255)

                                                                   tCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTc                     >  1:1377932/1‑93 (MQ=255)

                                                                    ccAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCa                    <  1:4904837/93‑1 (MQ=255)

                                                                     cAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCAt                   >  2:2034105/1‑93 (MQ=255)

                                                                     cAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCATTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCAt                   >  2:5609196/1‑93 (MQ=255)

                                                                      aGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATa                  <  2:2720198/93‑1 (MQ=255)

                                                                      aGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATa                  >  1:6218170/1‑93 (MQ=255)

                                                                       gCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATaa                 <  1:3192557/93‑1 (MQ=255)

                                                                        cTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAAt                <  2:4255597/93‑1 (MQ=255)

                                                                        cTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAAt                >  2:1877459/1‑93 (MQ=255)

                                                                           aTGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGc             >  2:4953240/1‑93 (MQ=255)

                                                                            tGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGcc            <  2:4064681/93‑1 (MQ=255)

                                                                            tGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGcc            <  2:1553815/93‑1 (MQ=255)

                                                                            tGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGcc            >  2:800837/1‑93 (MQ=255)

                                                                             gggACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGccc           >  1:22311/1‑93 (MQ=255)

                                                                                 cAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTc       <  1:3606216/93‑1 (MQ=255)

                                                                                    cTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAt    <  2:5513218/93‑1 (MQ=255)

                                                                                    cTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAt    <  1:4149437/93‑1 (MQ=255)

                                                                                    cTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAt    >  1:5894228/1‑93 (MQ=255)

                                                                                    cTCACGCGCGGTGCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAt    <  1:3511603/93‑1 (MQ=255)

                                                                                      cACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCg  >  2:5707962/1‑93 (MQ=255)

CATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCG  >  NC_000913/2864939‑2865117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  >  NC_000913/2864936‑2865122

AAGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGC                                                                                               >  SRR4302537.5791273/1‑94 (MQ=60)

 AGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCG                                                                                              >  SRR4302537.1051899/1‑94 (MQ=60)

 AGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCG                                                                                              <  SRR4302537.5245093/94‑1 (MQ=60)

 AGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCG                                                                                              <  SRR4302537.5017314/94‑1 (MQ=60)

 AGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCG                                                                                              <  SRR4302537.2233797/94‑1 (MQ=60)

 AGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCG                                                                                              <  SRR4302537.1790861/94‑1 (MQ=60)

  GCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGC                                                                                             >  SRR4302537.6338990/1‑94 (MQ=60)

  GCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGC                                                                                             >  SRR4302537.393999/1‑94 (MQ=60)

   CATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCG                                                                                            >  SRR4302537.1332026/1‑94 (MQ=60)

    ATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGG                                                                                           <  SRR4302537.2977312/94‑1 (MQ=60)

      ACGGCTGACCTCCTCAACTGGCTTATCCAGTTTCTCTGCGATCTCTTCCGCACCTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTT                                                                                         <  SRR4302537.1178160/94‑1 (MQ=60)

       CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTC                                                                                        <  SRR4302537.71669/94‑1 (MQ=60)

       CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTC                                                                                        <  SRR4302537.2257072/94‑1 (MQ=60)

         GCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGC                                                                                      >  SRR4302537.5009710/1‑94 (MQ=60)

           TGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAG                                                                                    >  SRR4302537.940449/1‑94 (MQ=60)

           TGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAG                                                                                    >  SRR4302537.6237495/1‑94 (MQ=60)

             ACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGT                                                                                  <  SRR4302537.3212362/94‑1 (MQ=60)

             ACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGT                                                                                  <  SRR4302537.4214262/94‑1 (MQ=60)

               GTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAA                                                                                >  SRR4302537.4712241/1‑94 (MQ=60)

               GTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAA                                                                                >  SRR4302537.2817348/1‑94 (MQ=60)

               GTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAA                                                                                >  SRR4302537.1338554/1‑94 (MQ=60)

                 CATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAAC                                                                              <  SRR4302537.5581536/94‑1 (MQ=60)

                 CATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAAC                                                                              >  SRR4302537.4272383/1‑94 (MQ=60)

                  ATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACG                                                                             <  SRR4302537.4225250/94‑1 (MQ=60)

                  ATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACG                                                                             >  SRR4302537.601978/1‑94 (MQ=60)

                    CAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTT                                                                           >  SRR4302537.5785423/1‑94 (MQ=60)

                    CAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTT                                                                           <  SRR4302537.4705969/94‑1 (MQ=60)

                     AACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTC                                                                          >  SRR4302537.4964260/1‑94 (MQ=60)

                      ACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCA                                                                         <  SRR4302537.4871639/94‑1 (MQ=60)

                      ACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCA                                                                         <  SRR4302537.4668843/94‑1 (MQ=60)

                      ACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGATCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCA                                                                         >  SRR4302537.4049968/1‑94 (MQ=60)

                       CTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAG                                                                        >  SRR4302537.182252/1‑94 (MQ=60)

                       CTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAG                                                                        <  SRR4302537.2024554/94‑1 (MQ=60)

                       CTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAG                                                                        <  SRR4302537.3221784/94‑1 (MQ=60)

                       CTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAG                                                                        <  SRR4302537.2916875/94‑1 (MQ=60)

                        TGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGC                                                                       >  SRR4302537.235133/1‑94 (MQ=60)

                        TGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGC                                                                       >  SRR4302537.5945490/1‑94 (MQ=60)

                         GGCTTATCCAGTTGCTCTGCGATCTCTTCCTCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCT                                                                      >  SRR4302537.2457927/1‑94 (MQ=60)

                          GCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGTGGTTCGCAGGTAAACGCTCAGCTC                                                                     >  SRR4302537.3840014/1‑94 (MQ=60)

                           CTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCC                                                                    >  SRR4302537.4986983/1‑94 (MQ=60)

                             TATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGGTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTT                                                                  >  SRR4302537.4221116/1‑94 (MQ=60)

                              ATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTT                                                                 <  SRR4302537.227561/94‑1 (MQ=60)

                               TCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTA                                                                >  SRR4302537.3734723/1‑94 (MQ=60)

                                CCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTAC                                                               <  SRR4302537.2835668/94‑1 (MQ=60)

                                CCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTAC                                                               <  SRR4302537.3606006/94‑1 (MQ=60)

                                CCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTAC                                                               <  SRR4302537.3504358/94‑1 (MQ=60)

                                CCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTAC                                                               <  SRR4302537.4879996/94‑1 (MQ=60)

                                CCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTAC                                                               >  SRR4302537.2549788/1‑94 (MQ=60)

                                  AGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGA                                                             >  SRR4302537.2944636/1‑94 (MQ=60)

                                   GTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGAT                                                            >  SRR4302537.5510856/1‑94 (MQ=60)

                                   GTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGAT                                                            <  SRR4302537.3068492/94‑1 (MQ=60)

                                   GTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGAT                                                            <  SRR4302537.6097719/94‑1 (MQ=60)

                                     TGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGT                                                          <  SRR4302537.5635046/94‑1 (MQ=60)

                                      GCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTG                                                         <  SRR4302537.6461509/94‑1 (MQ=60)

                                      GCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTG                                                         <  SRR4302537.71638/94‑1 (MQ=60)

                                      GCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTG                                                         <  SRR4302537.75032/94‑1 (MQ=60)

                                       CTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGA                                                        >  SRR4302537.6349502/1‑94 (MQ=60)

                                        TCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAA                                                       >  SRR4302537.2985976/1‑94 (MQ=60)

                                         CTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAT                                                      >  SRR4302537.2825764/1‑94 (MQ=60)

                                         CTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAT                                                      >  SRR4302537.138277/1‑94 (MQ=60)

                                         CTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAT                                                      <  SRR4302537.1579149/94‑1 (MQ=60)

                                         CTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAAT                                                      >  SRR4302537.1804380/1‑94 (MQ=60)

                                          TGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATC                                                     >  SRR4302537.156212/1‑94 (MQ=60)

                                          TGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATC                                                     >  SRR4302537.3711273/1‑94 (MQ=60)

                                            CGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGG                                                   >  SRR4302537.1021806/1‑94 (MQ=60)

                                            CGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGG                                                   <  SRR4302537.3817765/94‑1 (MQ=60)

                                             GATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGAC                                                  >  SRR4302537.2567604/1‑94 (MQ=60)

                                              ATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCA                                                 >  SRR4302537.3724235/1‑94 (MQ=60)

                                              ATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCA                                                 >  SRR4302537.3738584/1‑94 (MQ=60)

                                              ATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCA                                                 >  SRR4302537.3110273/1‑94 (MQ=60)

                                               TCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAA                                                <  SRR4302537.1641359/94‑1 (MQ=60)

                                                CTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAA                                               <  SRR4302537.3701519/94‑1 (MQ=60)

                                                CTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAA                                               <  SRR4302537.2460707/94‑1 (MQ=60)

                                                CTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAA                                               <  SRR4302537.4109413/94‑1 (MQ=60)

                                                   TTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGC                                            <  SRR4302537.5589595/94‑1 (MQ=60)

                                                    TCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAA                                           <  SRR4302537.2740889/94‑1 (MQ=60)

                                                    TCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAA                                           <  SRR4302537.6114620/94‑1 (MQ=60)

                                                     CCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAT                                          >  SRR4302537.4083111/1‑94 (MQ=60)

                                                      CGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATA                                         <  SRR4302537.4837164/94‑1 (MQ=60)

                                                      CGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATA                                         <  SRR4302537.1622816/94‑1 (MQ=60)

                                                       GCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAG                                        <  SRR4302537.578248/94‑1 (MQ=60)

                                                         ACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTA                                      <  SRR4302537.5227725/94‑1 (MQ=60)

                                                         ACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTA                                      <  SRR4302537.3692085/94‑1 (MQ=60)

                                                         ACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTA                                      >  SRR4302537.3201914/1‑94 (MQ=60)

                                                          CTTGGTTCATGGTCCAGCTTATGGTACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTAC                                     <  SRR4302537.6324964/94‑1 (MQ=60)

                                                          CTTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTAC                                     <  SRR4302537.5923768/94‑1 (MQ=60)

                                                           TTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACG                                    <  SRR4302537.2914066/94‑1 (MQ=60)

                                                           TTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACG                                    >  SRR4302537.4771334/1‑94 (MQ=60)

                                                           TTGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACG                                    <  SRR4302537.5380301/94‑1 (MQ=60)

                                                            TGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGG                                   <  SRR4302537.3507128/94‑1 (MQ=60)

                                                            TGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGG                                   >  SRR4302537.6203061/1‑94 (MQ=60)

                                                            TGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGG                                   >  SRR4302537.873975/1‑94 (MQ=60)

                                                            TGGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGG                                   <  SRR4302537.1724018/94‑1 (MQ=60)

                                                             GGTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG                                  <  SRR4302537.3916640/94‑1 (MQ=60)

                                                              GTTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGT                                 <  SRR4302537.4066985/94‑1 (MQ=60)

                                                               TTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTT                                >  SRR4302537.2738366/1‑94 (MQ=60)

                                                               TTCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTCCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTT                                <  SRR4302537.3478627/94‑1 (MQ=60)

                                                                TCATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTT                               <  SRR4302537.5226399/94‑1 (MQ=60)

                                                                 CATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTG                              >  SRR4302537.5181826/1‑94 (MQ=60)

                                                                 CATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTG                              <  SRR4302537.3086276/94‑1 (MQ=60)

                                                                 CATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTG                              >  SRR4302537.6386213/1‑94 (MQ=60)

                                                                  ATGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGG                             >  SRR4302537.1064127/1‑94 (MQ=60)

                                                                   TGGTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGT                            <  SRR4302537.1530219/94‑1 (MQ=60)

                                                                    GGTCCAGCTTATGGGACAACTNACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTT                           <  SRR4302537.2439501/94‑1 (MQ=60)

                                                                     GTCCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTC                          >  SRR4302537.1387551/1‑94 (MQ=60)

                                                                       CCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCAT                        <  SRR4302537.4938692/94‑1 (MQ=60)

                                                                       CCAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCAT                        <  SRR4302537.3136135/94‑1 (MQ=60)

                                                                       CCAGCGTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCAT                        <  SRR4302537.3088307/94‑1 (MQ=60)

                                                                        CAGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATA                       >  SRR4302537.6260982/1‑94 (MQ=60)

                                                                         AGCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAA                      <  SRR4302537.2355389/94‑1 (MQ=60)

                                                                          GCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAAT                     <  SRR4302537.5022964/94‑1 (MQ=60)

                                                                          GCTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAAT                     <  SRR4302537.3215005/94‑1 (MQ=60)

                                                                           CTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATC                    <  SRR4302537.4026994/94‑1 (MQ=60)

                                                                           CTTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATC                    >  SRR4302537.3870046/1‑94 (MQ=60)

                                                                            TTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCG                   <  SRR4302537.4626072/94‑1 (MQ=60)

                                                                            TTATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCG                   <  SRR4302537.1299167/94‑1 (MQ=60)

                                                                              ATGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCC                 >  SRR4302537.3027965/1‑94 (MQ=60)

                                                                               TGGGACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCC                >  SRR4302537.22484/1‑94 (MQ=60)

                                                                                  GACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTT             <  SRR4302537.4244132/94‑1 (MQ=60)

                                                                                   ACAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTC            >  SRR4302537.2030362/1‑94 (MQ=60)

                                                                                    CAACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCA           <  SRR4302537.3631631/94‑1 (MQ=60)

                                                                                      ACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAT         >  SRR4302537.5934670/1‑94 (MQ=60)

                                                                                      ACTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAAT         <  SRR4302537.6333298/94‑1 (MQ=60)

                                                                                       CTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATC        <  SRR4302537.4611511/94‑1 (MQ=60)

                                                                                       CTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATC        <  SRR4302537.4178402/94‑1 (MQ=60)

                                                                                       CTCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATC        <  SRR4302537.3137373/94‑1 (MQ=60)

                                                                                       CTCACGCGCGGTGCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATC        <  SRR4302537.3536443/94‑1 (MQ=60)

                                                                                        TCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCG       <  SRR4302537.885327/94‑1 (MQ=60)

                                                                                        TCACGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCG       <  SRR4302537.1933898/94‑1 (MQ=60)

                                                                                        TCACGCGCGCTTCGCAGCTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCG       <  SRR4302537.5678060/94‑1 (MQ=60)

                                                                                           CGCGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCT    <  SRR4302537.5167142/94‑1 (MQ=60)

                                                                                             CGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  <  SRR4302537.6256968/94‑1 (MQ=60)

                                                                                             CGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  <  SRR4302537.2488002/94‑1 (MQ=60)

                                                                                             CGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  >  SRR4302537.4865654/1‑94 (MQ=60)

                                                                                             CGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  <  SRR4302537.545687/94‑1 (MQ=60)

AAGCATACGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGG  >  NC_000913/2864936‑2865122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`