Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,945,698 |
(C)5→6 |
noncoding (70/77 nt) |
metV → |
tRNA‑Met |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,945,693 | 1 | . | C | 97.0%
| 527.9
/ 8.4
| 164 | noncoding (65/77 nt) | metV | tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base C (82/77); total (86/78) |
| Fisher's exact test for biased strand distribution p-value = 3.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.24e-01 |
Only 100 of 184 total aligned reads displayed.
ATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATC > NC_000913/2945601‑2945780
|
tttGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑c > 1:2292339/1‑93 (MQ=37)
tttGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑c > 2:2856902/1‑93 (MQ=37)
tgatgaAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑c > 2:3766606/1‑93 (MQ=37)
atgaAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑ccc > 2:704438/1‑93 (MQ=37)
atgaAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑ccc > 1:2705383/1‑93 (MQ=37)
gaAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑ccccg > 1:5925368/1‑91 (MQ=37)
aGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑ccccgca > 2:4738164/1‑89 (MQ=21)
aGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑cc‑ccccgca > 1:205622/1‑89 (MQ=21)
tAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAAc < 1:3058863/93‑1 (MQ=12)
tcAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAatt > 1:5430461/2‑93 (MQ=9)
gCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAatt > 1:507904/1‑93 (MQ=9)
gCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAatt > 2:6176670/1‑93 (MQ=9)
cAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CC‑CCCGCAACCAattat > 1:1021455/1‑93 (MQ=33)
aGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattat < 1:4604654/93‑1 (MQ=16)
gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattatt < 2:1216333/93‑1 (MQ=255)
gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattatt > 2:3291461/1‑93 (MQ=255)
gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattatt > 2:660657/1‑93 (MQ=255)
gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattatt > 2:1127981/1‑93 (MQ=255)
gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAattatt > 1:1933555/1‑93 (MQ=255)
gcGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGa < 1:3615627/92‑1 (MQ=255)
cGGTGACGCGGGGTGGAGCAGCCTTGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGaa < 2:4442933/93‑1 (MQ=255)
ggTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAac < 1:4951022/93‑1 (MQ=255)
ggTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAac > 1:3027735/1‑93 (MQ=255)
gTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAaca > 2:5337777/1‑93 (MQ=255)
gTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCACCCGCAACCACTTATTGAaca > 2:4064830/1‑93 (MQ=255)
gACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACAcc < 2:4958006/93‑1 (MQ=255)
aCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACAccc > 1:5532684/1‑93 (MQ=255)
aCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACAccc < 1:2739822/93‑1 (MQ=255)
aCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACAccc < 1:4901535/93‑1 (MQ=255)
cgGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTaa > 2:294313/1‑93 (MQ=255)
ggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACgg < 1:5117368/93‑1 (MQ=255)
ggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACgg > 1:4759086/1‑93 (MQ=255)
gTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACggg < 1:367017/93‑1 (MQ=255)
tGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGgt < 1:3103264/93‑1 (MQ=255)
ggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGgtg < 1:10981/93‑1 (MQ=255)
gAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGgtgt < 2:5905924/93‑1 (MQ=255)
cagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGtttt < 2:2403850/93‑1 (MQ=255)
cagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGtttt < 2:1513771/93‑1 (MQ=255)
cagcCTGCTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCAGGCCC‑CCCGCAACCAATTATTGAACACCATAACGGGCGtttt > 2:6137934/1‑93 (MQ=17)
gcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGtttttt < 2:5100243/93‑1 (MQ=255)
ggTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGtttttttttt > 2:880366/1‑93 (MQ=255)
tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTc < 1:842651/93‑1 (MQ=255)
aGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCt < 2:1462652/93‑1 (MQ=255)
gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTg > 2:4669697/1‑93 (MQ=255)
gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTg > 1:4039120/1‑93 (MQ=255)
cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTgg < 2:6418750/93‑1 (MQ=255)
cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTgg < 2:2617274/93‑1 (MQ=255)
tcgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGt > 2:2249649/1‑93 (MQ=255)
cgttgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGtc < 2:3267659/93‑1 (MQ=255)
cgtcgGGCGCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGtc < 2:1509018/93‑1 (MQ=255)
gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGtct > 2:1667300/1‑93 (MQ=255)
gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGtct < 1:3009650/93‑1 (MQ=255)
cgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTcc > 1:5578784/1‑93 (MQ=255)
gggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTccc < 1:3452913/93‑1 (MQ=255)
ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCa < 2:849483/93‑1 (MQ=255)
cTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATa > 2:813893/1‑93 (MQ=255)
cTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATa > 2:194468/1‑93 (MQ=255)
cATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaa > 2:6118890/1‑93 (MQ=255)
cATAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGAGTTTTTTTGTTTCTGGTCTCCCATaaa > 1:6294454/1‑93 (MQ=255)
tAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaaaa > 2:2096806/1‑93 (MQ=255)
tAACCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaaaa < 1:5035375/93‑1 (MQ=255)
aaCCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaaaaa > 1:2933953/1‑93 (MQ=255)
aCCCGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAg > 2:4851260/1‑93 (MQ=255)
cccGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgc > 1:5215335/1‑93 (MQ=255)
cccGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgc > 1:1532831/1‑93 (MQ=255)
ccGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcg > 1:3849841/1‑93 (MQ=255)
ccGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcg > 2:5715291/1‑93 (MQ=255)
ccGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcg > 1:1679012/1‑93 (MQ=255)
cGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcgc < 1:5384180/93‑1 (MQ=255)
cGAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcgc > 1:2628121/1‑93 (MQ=255)
cGAAGGTCGTCGGTGCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgcgc < 1:3212344/93‑1 (MQ=255)
gAAGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGcc > 1:1239936/1‑93 (MQ=255)
aGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAt < 1:3918988/93‑1 (MQ=255)
aGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAt < 1:588981/93‑1 (MQ=255)
aGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAt > 1:5027725/1‑93 (MQ=255)
aGGTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAt < 2:117640/93‑1 (MQ=255)
ggTCGTCGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAtt > 1:3891968/1‑93 (MQ=255)
gtcgtcGGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTc < 2:3620300/93‑1 (MQ=255)
tcgtcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCa < 2:293493/93‑1 (MQ=255)
tcgtcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCa < 1:4869964/93‑1 (MQ=255)
tcgtcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCa > 2:41800/1‑93 (MQ=255)
gtcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAgc > 2:909497/1‑93 (MQ=255)
tcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAgcg > 2:3114025/1‑93 (MQ=255)
tcgGTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAgcg > 2:5314520/1‑93 (MQ=255)
ggTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGcc < 1:4547547/93‑1 (MQ=255)
gTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCt > 1:2027420/1‑93 (MQ=255)
gTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCt > 1:4270213/1‑93 (MQ=255)
gTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCt > 1:4303066/1‑93 (MQ=255)
gTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCt > 2:6274291/1‑93 (MQ=255)
gTTCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCt < 2:1331611/93‑1 (MQ=255)
gTTCAAATCCGG‑CC‑CCCGCAACCAATTATTGAACACCCCAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAgcgcact > 1:283052/1‑90 (MQ=255)
ttCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCtt < 2:6054870/93‑1 (MQ=255)
ttCAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCtt > 1:2225525/1‑93 (MQ=255)
cAAATCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCtttt < 2:11223/93‑1 (MQ=255)
aaaTCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCttttt > 1:2563768/1‑93 (MQ=255)
aaTCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTa > 2:1886171/1‑93 (MQ=255)
aaTCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTa < 2:2453102/93‑1 (MQ=255)
aaTCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTa < 2:2813379/93‑1 (MQ=255)
aaTCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTa > 2:5292477/1‑93 (MQ=255)
tCCGGCCC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTatc > 1:3681240/1‑93 (MQ=255)
|
ATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CC‑CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATC > NC_000913/2945601‑2945780
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTC > NC_000913/2945605‑2945791
|
GATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCC > SRR4302537.2724266/1‑94 (MQ=21)
GATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCC < SRR4302537.1456159/94‑1 (MQ=21)
TGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCcg > SRR4302537.5966032/1‑92 (MQ=16)
TGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCcg < SRR4302537.2569409/94‑3 (MQ=16)
AAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCA > SRR4302537.5244303/1‑94 (MQ=10)
AAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCA > SRR4302537.4775051/1‑94 (MQ=10)
AAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCA > SRR4302537.207095/1‑94 (MQ=10)
TAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACC < SRR4302537.3080175/94‑1 (MQ=2)
AAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCA > SRR4302537.3896637/1‑94 (MQ=0)
AAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCA > SRR4302537.752841/1‑94 (MQ=0)
AAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCA > SRR4302537.6129053/1‑94 (MQ=0)
AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAA < SRR4302537.1057115/94‑1 (MQ=0)
AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAA > SRR4302537.5730418/1‑94 (MQ=0)
ATCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATT > SRR4302537.5467495/1‑94 (MQ=0)
AGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATT > SRR4302537.511390/1‑94 (MQ=0)
GCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCGCAACCAATTAT > SRR4302537.1028493/1‑94 (MQ=5)
GAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTAT < SRR4302537.3184661/94‑1 (MQ=4)
GAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTAT < SRR4302537.5728752/94‑1 (MQ=4)
CAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTAT < SRR4302537.4630432/94‑1 (MQ=4)
CAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTAT > SRR4302537.4158877/1‑94 (MQ=4)
AGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATT < SRR4302537.4636535/94‑1 (MQ=7)
AGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATT > SRR4302537.1947000/1‑94 (MQ=7)
GCGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAA < SRR4302537.3641117/94‑1 (MQ=14)
CGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAAC > SRR4302537.3048844/1‑94 (MQ=20)
CGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAAC > SRR4302537.2245004/1‑94 (MQ=20)
GGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACA < SRR4302537.3919399/94‑1 (MQ=22)
GGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACA < SRR4302537.4985166/94‑1 (MQ=22)
GTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACAC < SRR4302537.5072833/94‑1 (MQ=25)
GTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACAC < SRR4302537.3647095/94‑1 (MQ=25)
TGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACC < SRR4302537.3077256/94‑1 (MQ=25)
GACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCC > SRR4302537.5570448/1‑94 (MQ=25)
GACGCGGGGTCGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCC < SRR4302537.2659771/94‑1 (MQ=23)
ACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGTC‑CCCCCGCAACCAATTATTtcactacct > SRR4302537.756260/1‑85 (MQ=0)
ACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCT < SRR4302537.4935368/94‑1 (MQ=27)
ACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCT < SRR4302537.2758941/94‑1 (MQ=27)
GGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACG > SRR4302537.5588045/1‑94 (MQ=37)
GGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGG > SRR4302537.4791954/1‑94 (MQ=39)
GGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGG < SRR4302537.5152637/94‑1 (MQ=42)
GTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGT < SRR4302537.369564/94‑1 (MQ=44)
GTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGT > SRR4302537.3700271/1‑94 (MQ=44)
TGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTG < SRR4302537.3124936/94‑1 (MQ=47)
TGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCAGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTG < SRR4302537.3040469/94‑1 (MQ=45)
GGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGT < SRR4302537.19043/94‑1 (MQ=49)
GGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGT < SRR4302537.11061/94‑1 (MQ=49)
CAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTT > SRR4302537.2009896/1‑94 (MQ=59)
AGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTT > SRR4302537.3013101/1‑94 (MQ=60)
CCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTG < SRR4302537.946317/94‑1 (MQ=60)
GTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTC > SRR4302537.2881165/1‑94 (MQ=60)
TAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCT < SRR4302537.848426/94‑1 (MQ=60)
AGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTG > SRR4302537.1227248/1‑94 (MQ=60)
AGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTG > SRR4302537.5442057/1‑94 (MQ=60)
AGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTG < SRR4302537.2709322/94‑1 (MQ=60)
AGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTG < SRR4302537.280974/94‑1 (MQ=60)
AGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTG > SRR4302537.4067377/1‑94 (MQ=60)
GCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGG < SRR4302537.4036882/94‑1 (MQ=60)
CTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGT > SRR4302537.4828827/1‑94 (MQ=60)
CTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGT < SRR4302537.432887/94‑1 (MQ=60)
GTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTC < SRR4302537.3030594/94‑1 (MQ=60)
TCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCC > SRR4302537.5616914/1‑94 (MQ=60)
TCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCC > SRR4302537.5137770/1‑94 (MQ=60)
GGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCA < SRR4302537.3477331/94‑1 (MQ=60)
GGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCA < SRR4302537.2344386/94‑1 (MQ=60)
TCATAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGAGTTTTTTTGTTTCTGGTCTCCCATAAA > SRR4302537.6337577/1‑94 (MQ=60)
TAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAA > SRR4302537.2954554/1‑94 (MQ=60)
TAACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAA < SRR4302537.5070039/94‑1 (MQ=60)
AACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAG < SRR4302537.3370710/94‑1 (MQ=60)
ACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGC > SRR4302537.5319940/1‑94 (MQ=60)
ACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGC > SRR4302537.5251197/1‑94 (MQ=60)
ACCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGC > SRR4302537.1543542/1‑94 (MQ=60)
CCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCG > SRR4302537.1690762/1‑94 (MQ=60)
CCCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCG > SRR4302537.3876801/1‑94 (MQ=60)
CCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGC < SRR4302537.3765327/94‑1 (MQ=60)
CCGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGC > SRR4302537.2646529/1‑94 (MQ=60)
CGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCC > SRR4302537.1248553/1‑94 (MQ=60)
CGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCC < SRR4302537.5420990/94‑1 (MQ=60)
CGAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCC > SRR4302537.2601790/1‑94 (MQ=60)
CGAAGGTCGTCGGTGCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCC < SRR4302537.3234941/94‑1 (MQ=60)
GAAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCA > SRR4302537.4537426/1‑94 (MQ=60)
AAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAT > SRR4302537.498005/1‑94 (MQ=60)
AAGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAT > SRR4302537.5062344/1‑94 (MQ=60)
AGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATT < SRR4302537.3946381/94‑1 (MQ=60)
AGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATT < SRR4302537.593001/94‑1 (MQ=60)
AGGTCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATT > SRR4302537.3919183/1‑94 (MQ=60)
GTCGTCTGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCA < SRR4302537.1646722/94‑1 (MQ=60)
TCGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAG < SRR4302537.4903575/94‑1 (MQ=60)
CGTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGC > SRR4302537.808582/1‑94 (MQ=60)
GTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCG > SRR4302537.4920962/1‑94 (MQ=60)
GTCGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCG < SRR4302537.1277427/94‑1 (MQ=60)
CGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCC < SRR4302537.6217000/94‑1 (MQ=60)
CGGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCC > SRR4302537.5931576/1‑94 (MQ=60)
GGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCT > SRR4302537.4299880/1‑94 (MQ=60)
GGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCT > SRR4302537.4332968/1‑94 (MQ=60)
GGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCT < SRR4302537.4579020/94‑1 (MQ=60)
GGTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCT > SRR4302537.2041557/1‑94 (MQ=60)
GGTTCAAATCCG‑G‑CCCCCGCAACCAATTATTGAACACCCCAACGGGCGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCact > SRR4302537.285024/1‑91 (MQ=60)
GTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTT < SRR4302537.3498954/94‑1 (MQ=60)
GTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTT > SRR4302537.5006588/1‑94 (MQ=60)
GTTCAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTT > SRR4302537.2241218/1‑94 (MQ=60)
CAAATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTT > SRR4302537.2581730/1‑94 (MQ=60)
ATCCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATC > SRR4302537.3707133/1‑94 (MQ=60)
CCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCAT < SRR4302537.4034368/94‑1 (MQ=60)
CCG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCAT > SRR4302537.4827650/1‑94 (MQ=60)
CG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATC < SRR4302537.5817727/94‑1 (MQ=60)
CG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATC > SRR4302537.516228/1‑94 (MQ=60)
CG‑GCCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGAGCCATTAAGCGCCTTTTTATCATC > SRR4302537.4862357/1‑94 (MQ=60)
G‑C‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCC > SRR4302537.6101734/1‑94 (MQ=60)
ggcCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCC < SRR4302537.1519787/91‑1 (MQ=60)
C‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCC > SRR4302537.6074904/1‑94 (MQ=60)
C‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCC > SRR4302537.6057464/1‑94 (MQ=60)
CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCT > SRR4302537.4037110/1‑94 (MQ=60)
CCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTT > SRR4302537.535524/1‑94 (MQ=60)
CCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTT > SRR4302537.325610/1‑94 (MQ=60)
CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTC > SRR4302537.5975528/1‑94 (MQ=60)
CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTC > SRR4302537.4377893/1‑94 (MQ=60)
CCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTC > SRR4302537.3413072/1‑94 (MQ=60)
CCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCT < SRR4302537.919642/94‑1 (MQ=60)
CGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTC > SRR4302537.5975487/1‑94 (MQ=60)
CGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTC < SRR4302537.2865167/94‑1 (MQ=60)
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GATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCG‑G‑CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTC > NC_000913/2945605‑2945791
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
