Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,011,958	A→G	G101G (GGT→GGC)	b2875 ←	putative synthases

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,011,958	0	A	G	94.1%	716.1 / 26.5	236	G101G (GGT→GGC)	b2875	putative synthases
Reads supporting (aligned to +/- strand): ref base A (6/8); new base G (104/118); total (110/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.54e-01

Only 100 of 246 total aligned reads displayed.

AACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAA  >  NC_000913/3011868‑3012047

aaCGGCAATATCAAATCCTAATAGCGCCGCACTCTGGTCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGcc                                                                                         >  1:3956493/1‑93 (MQ=255)

aaCGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGcc                                                                                         >  1:6027416/1‑93 (MQ=255)

aaCGGCAATATCAAACCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACAGGCCCCGCGCCAATCAACACCAGACGTGGACGCATGcc                                                                                         <  2:1899064/93‑1 (MQ=255)

 aCGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCa                                                                                        >  2:443937/1‑93 (MQ=255)

  cGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCAt                                                                                       <  2:4318877/93‑1 (MQ=255)

   ggCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATg                                                                                      <  2:3724894/93‑1 (MQ=255)

   ggCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATg                                                                                      >  2:1712176/1‑93 (MQ=255)

   ggCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATg                                                                                      <  1:3784141/93‑1 (MQ=255)

   ggCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATg                                                                                      <  2:4222462/93‑1 (MQ=255)

    gCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATgg                                                                                     <  1:4094022/93‑1 (MQ=255)

     cAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGa                                                                                    <  2:3099289/93‑1 (MQ=255)

     cAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGa                                                                                    >  2:3758641/1‑93 (MQ=255)

     cAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGa                                                                                    <  2:2991381/93‑1 (MQ=255)

      aagatCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGAc                                                                                   <  1:3283909/90‑1 (MQ=255)

       atatCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACg                                                                                  >  2:5282184/1‑93 (MQ=255)

         atCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCt                                                                                >  2:5693211/1‑93 (MQ=255)

         atCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCt                                                                                >  2:2011964/1‑93 (MQ=255)

          tCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTg                                                                               >  2:487891/1‑93 (MQ=255)

           cAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGa                                                                              <  2:1086126/93‑1 (MQ=255)

            aaaTCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGAt                                                                             >  1:2272520/1‑93 (MQ=255)

             aaTCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATa                                                                            >  2:1704322/1‑93 (MQ=255)

              aTCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATaa                                                                           <  1:4292093/93‑1 (MQ=255)

                ccTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAAt                                                                         <  2:4841067/93‑1 (MQ=255)

                 cTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATa                                                                        <  2:4458151/93‑1 (MQ=255)

                 cTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATa                                                                        >  2:3259047/1‑93 (MQ=255)

                  tAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATAc                                                                       <  1:3565523/93‑1 (MQ=255)

                   aaTAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACt                                                                      <  2:2549191/93‑1 (MQ=255)

                   aaTAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACt                                                                      >  1:6012117/1‑93 (MQ=255)

                     tAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGa                                                                    >  1:2052248/1‑93 (MQ=255)

                     tAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGa                                                                    <  2:5556001/93‑1 (MQ=255)

                     tAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGa                                                                    <  1:2319157/93‑1 (MQ=255)

                     tAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGa                                                                    <  1:5889974/93‑1 (MQ=255)

                      aGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGAc                                                                   >  1:485063/1‑93 (MQ=255)

                      aGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGAc                                                                   >  1:2000188/1‑93 (MQ=255)

                       gcgcCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACa                                                                  >  1:16460/1‑93 (MQ=255)

                        cgccgcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAt                                                                 <  1:6103934/93‑1 (MQ=255)

                         gccgcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAtt                                                                >  2:4390290/1‑93 (MQ=255)

                         gccgcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAtt                                                                >  1:2175501/1‑93 (MQ=255)

                         gccgcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAtt                                                                <  2:4937187/93‑1 (MQ=255)

                            gcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCa                                                             <  2:3004568/93‑1 (MQ=255)

                            gcACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCa                                                             <  1:4334835/93‑1 (MQ=255)

                              aCTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAcc                                                           >  1:984436/1‑93 (MQ=255)

                              aCTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAcc                                                           >  2:3349763/1‑93 (MQ=255)

                              aCTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAcc                                                           >  2:5238299/1‑93 (MQ=255)

                               ctctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCt                                                          >  1:5888108/1‑93 (MQ=255)

                               ctctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCt                                                          >  2:750767/1‑93 (MQ=255)

                                tctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCTATGGACGCTGATAAATACTGACATTGCACCTc                                                         >  1:1059747/1‑93 (MQ=255)

                                tctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTc                                                         <  2:6067643/93‑1 (MQ=255)

                                tctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTc                                                         <  1:4936344/93‑1 (MQ=255)

                                 ctGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTcc                                                        >  1:3408392/1‑93 (MQ=255)

                                  tGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCca                                                       >  1:6082039/1‑93 (MQ=255)

                                    ggCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCAATGGACGCTGATAAATACTGACATTGCACCTCcaca                                                     <  1:1504235/93‑1 (MQ=255)

                                     gCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACaa                                                    >  2:2721180/1‑93 (MQ=255)

                                       tATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATc                                                  <  1:6244466/93‑1 (MQ=255)

                                       tATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATc                                                  >  2:1341873/1‑93 (MQ=255)

                                       tATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATc                                                  <  1:1444202/93‑1 (MQ=255)

                                       tATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATc                                                  >  2:2378974/1‑93 (MQ=255)

                                        aTCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCt                                                 >  2:2796228/1‑93 (MQ=255)

                                           gCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAc                                              >  2:809486/1‑93 (MQ=255)

                                           gCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAc                                              <  1:2775654/93‑1 (MQ=255)

                                            cccGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAcc                                             <  2:5265779/93‑1 (MQ=255)

                                             ccGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAccc                                            >  1:643917/1‑93 (MQ=255)

                                             ccGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAccc                                            <  1:5147412/93‑1 (MQ=255)

                                              cGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCg                                           <  1:1549268/93‑1 (MQ=255)

                                                 ttGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACa                                        <  2:3526289/93‑1 (MQ=255)

                                                 ttGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACa                                        <  2:5000444/93‑1 (MQ=255)

                                                   gACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGc                                      >  2:5757521/1‑93 (MQ=255)

                                                   gACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGc                                      <  2:3654436/93‑1 (MQ=255)

                                                   gACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAga                                      >  1:4463157/1‑92 (MQ=255)

                                                    aCATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCa                                     <  2:596876/93‑1 (MQ=255)

                                                    aCATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCa                                     <  2:2155543/93‑1 (MQ=255)

                                                     cATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCAt                                    <  2:1757723/93‑1 (MQ=255)

                                                      aTGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGCCCCGACAGCATc                                   <  2:3149734/93‑1 (MQ=255)

                                                           ccGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCAc                              >  1:1031651/1‑93 (MQ=255)

                                                            cgcgCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCAcc                             >  1:5660888/1‑93 (MQ=255)

                                                                ccAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTa                         >  1:873894/1‑93 (MQ=255)

                                                                 cAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTAc                        >  1:3732517/1‑93 (MQ=255)

                                                                   aTCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGa                      <  2:1234531/93‑1 (MQ=255)

                                                                   aTCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGa                      <  1:4477407/93‑1 (MQ=255)

                                                                    tCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAg                     <  1:3123435/93‑1 (MQ=255)

                                                                         acCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATa                <  1:2882982/93‑1 (MQ=255)

                                                                         acCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATa                >  2:689904/1‑93 (MQ=255)

                                                                          ccAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATAc               >  1:1677217/1‑93 (MQ=255)

                                                                            aGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGt             >  1:576422/1‑93 (MQ=255)

                                                                              aCGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCCCCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTcc           <  1:2047205/93‑1 (MQ=255)

                                                                               cGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCa          <  1:5419243/93‑1 (MQ=255)

                                                                               cGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCa          <  2:5359696/93‑1 (MQ=255)

                                                                               cGTGAACGCATGCCGTGGCGGCTGATAAATACTGACATTGCCCCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCa          <  1:2615033/93‑1 (MQ=255)

                                                                                ggggACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAt         <  1:1879792/91‑1 (MQ=255)

                                                                                gTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAt         <  1:5282184/93‑1 (MQ=255)

                                                                                gTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAt         <  2:2915969/93‑1 (MQ=255)

                                                                                gTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAt         >  1:5210491/1‑93 (MQ=255)

                                                                                 tGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATg        <  2:5457564/93‑1 (MQ=255)

                                                                                 gggACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATg        <  2:6172906/92‑1 (MQ=255)

                                                                                     cccATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaat    <  1:4615240/91‑1 (MQ=255)

                                                                                     cGCATGCCAAGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaat    >  1:5736924/1‑93 (MQ=255)

                                                                                      gCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaata   >  1:4656351/1‑93 (MQ=255)

                                                                                      gCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaata   >  2:4583924/1‑93 (MQ=255)

                                                                                       cATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaataa  >  2:4959279/1‑93 (MQ=255)

                                                                                       cATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGaataa  <  2:469206/93‑1 (MQ=255)

AACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAA  >  NC_000913/3011868‑3012047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGC  >  NC_000913/3011865‑3012051

AGCAACGGCAATATCAGATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATG                                                                                               <  SRR4302537.1336163/94‑1 (MQ=60)

AGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATG                                                                                               <  SRR4302537.4335120/94‑1 (MQ=60)

AGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATG                                                                                               >  SRR4302537.5628719/1‑94 (MQ=60)

AGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATG                                                                                               <  SRR4302537.1619879/94‑1 (MQ=60)

  CAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGTCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCC                                                                                             >  SRR4302537.3984178/1‑94 (MQ=60)

  CAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCC                                                                                             >  SRR4302537.6068833/1‑94 (MQ=60)

  CAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCC                                                                                             >  SRR4302537.4659396/1‑94 (MQ=60)

  CAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCC                                                                                             <  SRR4302537.433882/94‑1 (MQ=60)

  CAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCC                                                                                             <  SRR4302537.4293206/94‑1 (MQ=60)

   AACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCA                                                                                            >  SRR4302537.796880/1‑94 (MQ=60)

    ACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCAT                                                                                           <  SRR4302537.3780021/94‑1 (MQ=60)

      GGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGGCATGG                                                                                         >  SRR4302537.955075/1‑94 (MQ=60)

      GGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGG                                                                                         <  SRR4302537.3810709/94‑1 (MQ=60)

       GCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGA                                                                                        >  SRR4302537.1541078/1‑94 (MQ=60)

       GCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGA                                                                                        <  SRR4302537.4122616/94‑1 (MQ=60)

         AAGATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACG                                                                                      <  SRR4302537.3307096/94‑1 (MQ=60)

           TATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCT                                                                                    >  SRR4302537.6214483/1‑94 (MQ=60)

           TATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCT                                                                                    <  SRR4302537.4632619/94‑1 (MQ=60)

            ATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTG                                                                                   >  SRR4302537.6483412/1‑94 (MQ=60)

              CAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGAT                                                                                 >  SRR4302537.2288570/1‑94 (MQ=60)

              CAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGAT                                                                                 <  SRR4302537.1484888/94‑1 (MQ=60)

               AAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATA                                                                                >  SRR4302537.6116174/1‑94 (MQ=60)

                AATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAA                                                                               <  SRR4302537.4295448/94‑1 (MQ=60)

                 ATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAA                                                                              <  SRR4302537.4321922/94‑1 (MQ=60)

                 ATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAA                                                                              >  SRR4302537.1592876/1‑94 (MQ=60)

                  TCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAAT                                                                             >  SRR4302537.3143105/1‑94 (MQ=60)

                  TCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAAT                                                                             >  SRR4302537.472422/1‑94 (MQ=60)

                     TAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACT                                                                          <  SRR4302537.4103700/94‑1 (MQ=60)

                     TAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACT                                                                          <  SRR4302537.3590668/94‑1 (MQ=60)

                     TAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACT                                                                          >  SRR4302537.6053425/1‑94 (MQ=60)

                     TAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACT                                                                          <  SRR4302537.6108021/94‑1 (MQ=60)

                      AATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTG                                                                         <  SRR4302537.5981573/94‑1 (MQ=60)

                      AATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTG                                                                         <  SRR4302537.5297926/94‑1 (MQ=60)

                      AATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTG                                                                         >  SRR4302537.4487016/1‑94 (MQ=60)

                       ATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGA                                                                        >  SRR4302537.2066644/1‑94 (MQ=60)

                       ATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGA                                                                        >  SRR4302537.2043280/1‑94 (MQ=60)

                        TAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGAC                                                                       <  SRR4302537.2335533/94‑1 (MQ=60)

                        TAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGAC                                                                       >  SRR4302537.488388/1‑94 (MQ=60)

                        TAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGAC                                                                       >  SRR4302537.2014097/1‑94 (MQ=60)

                        TAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGAC                                                                       <  SRR4302537.5930389/94‑1 (MQ=60)

                         AGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACA                                                                      >  SRR4302537.16595/1‑94 (MQ=60)

                          GCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAT                                                                     <  SRR4302537.2371803/94‑1 (MQ=60)

                          GCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAT                                                                     <  SRR4302537.2823708/94‑1 (MQ=60)

                          GCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACAT                                                                     <  SRR4302537.2856034/94‑1 (MQ=60)

                           CGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATT                                                                    <  SRR4302537.6145872/94‑1 (MQ=60)

                           CGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATT                                                                    >  SRR4302537.2190836/1‑94 (MQ=60)

                            GCCGCACTCTGGTCTATCGCCCGGTTGCCATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTG                                                                   <  SRR4302537.203659/94‑1 (MQ=60)

                             CCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGC                                                                  >  SRR4302537.2641497/1‑94 (MQ=60)

                               GCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAC                                                                >  SRR4302537.5830015/1‑94 (MQ=60)

                               GCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAC                                                                <  SRR4302537.4364939/94‑1 (MQ=60)

                               GCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCAC                                                                >  SRR4302537.6448397/1‑94 (MQ=60)

                                CACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACC                                                               >  SRR4302537.991233/1‑94 (MQ=60)

                                 CCTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCT                                                              <  SRR4302537.5197357/94‑1 (MQ=60)

                                 ACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCT                                                              >  SRR4302537.5928510/1‑94 (MQ=60)

                                 ACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCT                                                              >  SRR4302537.1799122/1‑94 (MQ=60)

                                 ACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACATGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCT                                                              >  SRR4302537.3727535/1‑94 (MQ=60)

                                  CTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCTATGGACGCTGATAAATACTGACATTGCACCTC                                                             >  SRR4302537.1067053/1‑94 (MQ=60)

                                  CTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTC                                                             <  SRR4302537.3765274/94‑1 (MQ=60)

                                  CTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTC                                                             <  SRR4302537.5663124/94‑1 (MQ=60)

                                  CTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTC                                                             >  SRR4302537.2295650/1‑94 (MQ=60)

                                   TCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCC                                                            <  SRR4302537.4970388/94‑1 (MQ=60)

                                   TCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCC                                                            >  SRR4302537.3432540/1‑94 (MQ=60)

                                    CTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCA                                                           >  SRR4302537.6123826/1‑94 (MQ=60)

                                       GGCTATCGCCCGGTTGACATGCCCCGCTCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAA                                                        <  SRR4302537.2145735/94‑1 (MQ=60)

                                       GGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCAATGGACGCTGATAAATACTGACATTGCACCTCCACAA                                                        <  SRR4302537.1514731/94‑1 (MQ=60)

                                          TATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCT                                                     <  SRR4302537.6287379/94‑1 (MQ=60)

                                          TATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCT                                                     <  SRR4302537.1454260/94‑1 (MQ=60)

                                             CGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGAC                                                  >  SRR4302537.4992321/1‑94 (MQ=60)

                                              GCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACC                                                 >  SRR4302537.4115600/1‑94 (MQ=60)

                                              GCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACC                                                 <  SRR4302537.2795058/94‑1 (MQ=60)

                                               CCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCC                                                <  SRR4302537.3361987/94‑1 (MQ=60)

                                               CCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCC                                                >  SRR4302537.648304/1‑94 (MQ=60)

                                                CCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCG                                               <  SRR4302537.1646537/94‑1 (MQ=60)

                                                CCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCG                                               <  SRR4302537.5182881/94‑1 (MQ=60)

                                                 CGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGA                                              <  SRR4302537.1560079/94‑1 (MQ=60)

                                                  GGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGAC                                             <  SRR4302537.1371398/94‑1 (MQ=60)

                                                  GGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGAC                                             <  SRR4302537.6132658/94‑1 (MQ=60)

                                                  GGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGAC                                             <  SRR4302537.4635895/94‑1 (MQ=60)

                                                     TGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGA                                          >  SRR4302537.4494023/1‑94 (MQ=60)

                                                       ACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCAT                                        <  SRR4302537.1918534/94‑1 (MQ=60)

                                                        CATGCCCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATC                                       >  SRR4302537.3201218/1‑94 (MQ=60)

                                                         ATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCC                                      <  SRR4302537.3953137/94‑1 (MQ=60)

                                                          TGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCG                                     >  SRR4302537.5095044/1‑94 (MQ=60)

                                                             CCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCAC                                  <  SRR4302537.1044069/94‑1 (MQ=60)

                                                             CCCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCAC                                  >  SRR4302537.1038759/1‑94 (MQ=60)

                                                              CCGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACC                                 >  SRR4302537.5699628/1‑94 (MQ=60)

                                                               CGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCG                                <  SRR4302537.2114204/94‑1 (MQ=60)

                                                               CGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCG                                <  SRR4302537.3520839/94‑1 (MQ=60)

                                                               CGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCG                                <  SRR4302537.5928706/94‑1 (MQ=60)

                                                               CGCGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTCACCCGACAGCATACGCACCG                                >  SRR4302537.6202977/1‑94 (MQ=60)

                                                                 CGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTT                              <  SRR4302537.4393471/94‑1 (MQ=60)

                                                                 CGCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTT                              <  SRR4302537.3247867/94‑1 (MQ=60)

                                                                  GCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTA                             >  SRR4302537.6044914/1‑94 (MQ=60)

                                                                  GCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTA                             >  SRR4302537.4495404/1‑94 (MQ=60)

                                                                  GCCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTA                             >  SRR4302537.879906/1‑94 (MQ=60)

                                                                   CCAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTAC                            >  SRR4302537.3758735/1‑94 (MQ=60)

                                                                    CAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACG                           >  SRR4302537.3552845/1‑94 (MQ=60)

                                                                    CAATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACG                           <  SRR4302537.4348189/94‑1 (MQ=60)

                                                                      ATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAG                         <  SRR4302537.1508852/94‑1 (MQ=60)

                                                                      ATCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAG                         <  SRR4302537.4508379/94‑1 (MQ=60)

                                                                       TCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGC                        >  SRR4302537.5371665/1‑94 (MQ=60)

                                                                       TCAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGC                        <  SRR4302537.3145292/94‑1 (MQ=60)

                                                                        CAACACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCC                       <  SRR4302537.492505/94‑1 (MQ=60)

                                                                           CACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATA                    >  SRR4302537.5725754/1‑94 (MQ=60)

                                                                            ACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATAC                   <  SRR4302537.2903213/94‑1 (MQ=60)

                                                                            ACCAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATAC                   >  SRR4302537.1688959/1‑94 (MQ=60)

                                                                              CAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGT                 <  SRR4302537.5589167/94‑1 (MQ=60)

                                                                              CAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGT                 >  SRR4302537.5791275/1‑94 (MQ=60)

                                                                              CAGACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGT                 >  SRR4302537.580370/1‑94 (MQ=60)

                                                                                 ACGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCCCCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCA              <  SRR4302537.2061559/94‑1 (MQ=60)

                                                                                  CGTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAT             <  SRR4302537.5456177/94‑1 (MQ=60)

                                                                                  CGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCAT             >  SRR4302537.5246321/1‑94 (MQ=60)

                                                                                   GTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATG            <  SRR4302537.5318515/94‑1 (MQ=60)

                                                                                   GTGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATG            <  SRR4302537.6063091/94‑1 (MQ=60)

                                                                                   GGGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATG            <  SRR4302537.1892867/94‑1 (MQ=60)

                                                                                    TGGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGG           <  SRR4302537.2193615/94‑1 (MQ=60)

                                                                                     GGACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGA          >  SRR4302537.1657603/1‑94 (MQ=60)

                                                                                       ACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAAT        >  SRR4302537.2063099/1‑94 (MQ=60)

                                                                                       ACGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAAT        <  SRR4302537.5820881/94‑1 (MQ=60)

                                                                                       ACGCATGCCAAGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAAT        >  SRR4302537.5776201/1‑94 (MQ=60)

                                                                                        CGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATA       >  SRR4302537.4688542/1‑94 (MQ=60)

                                                                                        CGCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATA       <  SRR4302537.5312644/94‑1 (MQ=60)

                                                                                        CCCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATA       <  SRR4302537.4647203/94‑1 (MQ=60)

                                                                                         GCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAA      >  SRR4302537.1836289/1‑94 (MQ=60)

                                                                                         GCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAA      <  SRR4302537.487444/94‑1 (MQ=60)

                                                                                         GCATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAA      <  SRR4302537.2598595/94‑1 (MQ=60)

                                                                                          CATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAAT     >  SRR4302537.3845745/1‑94 (MQ=60)

                                                                                           ATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATC    >  SRR4302537.5635066/1‑94 (MQ=60)

                                                                                           ATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATC    >  SRR4302537.5208959/1‑94 (MQ=60)

                                                                                           ATGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATC    <  SRR4302537.5994987/94‑1 (MQ=60)

                                                                                            TGCCATGGACTCTGATAAATGCTGTAATCGCACCTCCACAACCTGACCCGACAGCACCCGCACCGTTACGAGCCATACGTCCATGGAATAATCG   <  SRR4302537.2096081/94‑1 (MQ=60)

                                                                                            TGCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCG   >  SRR4302537.3555481/1‑94 (MQ=60)

                                                                                            TGCCATGGACGCTGATAAATACTGACATGGCACCTCCACAATCTGCCCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCG   <  SRR4302537.393214/94‑1 (MQ=60)

                                                                                             GCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGC  >  SRR4302537.5206922/1‑94 (MQ=60)

                                                                                             GCCATGGACCCTGATAAATACTGACATTGCCCCCCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGC  <  SRR4302537.4323885/94‑1 (MQ=60)

AGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGC  >  NC_000913/3011865‑3012051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`