Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,021,808 T→C R824R (CGT→CGC)  b2881 → putative dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,021,8080TC100.0% 709.4 / NA 206R824R (CGT→CGC) b2881putative dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (106/100);  total (106/100)

Only 100 of 212 total aligned reads displayed.

TGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGTACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACG  >  NC_000913/3021718‑3021896
                                                                                          |                                                                                        
tGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCAc                                                                                        <  2:44025/93‑1 (MQ=255)
  gTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACgg                                                                                      >  2:1556815/1‑93 (MQ=255)
   ttCACTGGTGGGAACTGTCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACggg                                                                                     <  1:6054036/93‑1 (MQ=255)
    tCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACgggg                                                                                    >  2:4019270/1‑92 (MQ=255)
    tCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGt                                                                                    >  1:872737/1‑93 (MQ=255)
    tCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGt                                                                                    <  1:1341143/93‑1 (MQ=255)
    tCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGt                                                                                    <  2:5252110/93‑1 (MQ=255)
    tCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGAGCACGGGt                                                                                    <  2:6302725/93‑1 (MQ=255)
     cACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTg                                                                                   >  1:3308730/1‑93 (MQ=255)
      aCTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGa                                                                                  <  2:5223455/93‑1 (MQ=255)
      aCTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGa                                                                                  >  2:6460772/1‑93 (MQ=255)
       cTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGaa                                                                                 >  1:4998338/1‑93 (MQ=255)
          gtggGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATc                                                                              >  1:775778/1‑93 (MQ=255)
              gAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGcc                                                                          <  2:3375710/93‑1 (MQ=255)
              gAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGcc                                                                          <  2:2138163/93‑1 (MQ=255)
              gAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGcc                                                                          <  1:3088452/93‑1 (MQ=255)
               aaCTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCt                                                                         <  1:1675479/93‑1 (MQ=255)
               aaCTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCt                                                                         >  2:913142/1‑93 (MQ=255)
               aaCTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCt                                                                         >  2:1818927/1‑93 (MQ=255)
                aCTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTg                                                                        <  1:2182150/93‑1 (MQ=255)
                aCTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTg                                                                        <  1:1262340/93‑1 (MQ=255)
                 cTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTgg                                                                       <  2:5390370/93‑1 (MQ=255)
                  tGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGa                                                                      <  2:5506948/93‑1 (MQ=255)
                    gCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATa                                                                    >  2:3708197/1‑93 (MQ=255)
                     cAGTTATATCGCGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATaa                                                                   <  1:3598286/93‑1 (MQ=255)
                      aGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATaaa                                                                  >  2:2376814/1‑93 (MQ=255)
                      aGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATaaa                                                                  <  2:4286882/93‑1 (MQ=255)
                      aGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATaaa                                                                  <  1:1055923/93‑1 (MQ=255)
                       gTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAAt                                                                 >  1:2973192/1‑93 (MQ=255)
                        ttATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAAtt                                                                >  1:3821625/1‑93 (MQ=255)
                         tataTCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTc                                                               >  2:3540295/1‑93 (MQ=255)
                          atatCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCt                                                              <  2:5678953/93‑1 (MQ=255)
                            atCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTAc                                                            <  1:5782046/93‑1 (MQ=255)
                              cACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGc                                                          <  2:4033843/93‑1 (MQ=255)
                              cACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGc                                                          >  2:592478/1‑93 (MQ=255)
                                cGCCTGATTTCGCGTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCt                                                        <  1:203119/93‑1 (MQ=255)
                                cGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCt                                                        >  2:4057098/1‑93 (MQ=255)
                                 gCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCtt                                                       >  1:2277607/1‑93 (MQ=255)
                                   cTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGc                                                     >  1:1475611/1‑93 (MQ=255)
                                   cTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGc                                                     >  1:5542678/1‑93 (MQ=255)
                                    tGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCt                                                    <  1:2233638/93‑1 (MQ=255)
                                    tGATGTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCt                                                    <  2:5829165/93‑1 (MQ=255)
                                     gATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTg                                                   >  1:4292266/1‑93 (MQ=255)
                                     gATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTg                                                   <  2:2157345/93‑1 (MQ=255)
                                      aTTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTgg                                                  <  1:1511439/93‑1 (MQ=255)
                                       tttCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGa                                                 >  2:1767095/1‑93 (MQ=255)
                                       tttCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGa                                                 >  2:6178845/1‑93 (MQ=255)
                                       tttCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGa                                                 >  1:6284788/1‑93 (MQ=255)
                                        ttCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGAc                                                <  1:467854/93‑1 (MQ=255)
                                         tCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACt                                               <  1:4308592/93‑1 (MQ=255)
                                           gCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGc                                             <  2:3968478/93‑1 (MQ=255)
                                           gCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGc                                             >  1:5080825/1‑93 (MQ=255)
                                           gCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGc                                             >  1:1313322/1‑93 (MQ=255)
                                            ccTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCg                                            <  2:4088397/93‑1 (MQ=255)
                                            ccTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCg                                            >  2:1980797/1‑93 (MQ=255)
                                             cTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCgg                                           <  1:242672/93‑1 (MQ=255)
                                              ttCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGt                                          <  1:4770722/93‑1 (MQ=255)
                                              ttCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGt                                          <  1:3158823/93‑1 (MQ=255)
                                               tCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTa                                         >  2:1357127/1‑93 (MQ=255)
                                               tCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTa                                         >  1:3881941/1‑93 (MQ=255)
                                               tCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTa                                         <  2:2089369/93‑1 (MQ=255)
                                                 ccGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTaca                                       >  2:4922595/1‑93 (MQ=255)
                                                 ccGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTaca                                       >  2:3463701/1‑93 (MQ=255)
                                                  cGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTacac                                      >  1:2360194/1‑93 (MQ=255)
                                                    tATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCg                                    <  2:2703234/93‑1 (MQ=255)
                                                    tATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCg                                    >  1:2372028/1‑93 (MQ=255)
                                                     aTGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCgg                                   >  1:5241195/1‑93 (MQ=255)
                                                      tGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGt                                  <  2:5075361/93‑1 (MQ=255)
                                                      tGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGt                                  >  1:635849/1‑93 (MQ=255)
                                                       ggCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTc                                 <  2:1018962/93‑1 (MQ=255)
                                                          gcAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAAt                              >  1:1345020/1‑93 (MQ=255)
                                                           cAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATc                             >  1:373094/1‑93 (MQ=255)
                                                            aaaCTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATcc                            <  2:1485724/93‑1 (MQ=255)
                                                            aaaCTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATcc                            <  2:4703702/93‑1 (MQ=255)
                                                              aCTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCag                          >  2:679488/1‑93 (MQ=255)
                                                              aCTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCag                          >  1:4274686/1‑93 (MQ=255)
                                                              aCTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCag                          >  2:3612769/1‑93 (MQ=255)
                                                                ttCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCagag                        <  1:3252945/93‑1 (MQ=255)
                                                                  cGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGtt                      <  1:5583772/93‑1 (MQ=255)
                                                                    cTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAg                    >  1:4952113/1‑93 (MQ=255)
                                                                     tGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGc                   <  1:3978626/93‑1 (MQ=255)
                                                                      gAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCg                  >  2:2909760/1‑93 (MQ=255)
                                                                       aaGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGt                 >  2:3167812/1‑93 (MQ=255)
                                                                        aGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGtt                >  1:1922696/1‑93 (MQ=255)
                                                                        aGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGtt                >  2:1228728/1‑93 (MQ=255)
                                                                         gTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTg               <  1:3771227/93‑1 (MQ=255)
                                                                           tGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACAACGGTCAATCCAGAGTTAGCGTTggg             >  1:5999363/1‑93 (MQ=255)
                                                                            gCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGa            <  1:5705513/93‑1 (MQ=255)
                                                                             ccGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAc           >  1:2874041/1‑93 (MQ=255)
                                                                              cGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACa          >  1:4399817/1‑93 (MQ=255)
                                                                               gTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACaa         >  1:3369114/1‑93 (MQ=255)
                                                                                tCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACaaa        <  1:1237780/93‑1 (MQ=255)
                                                                                tCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACaaa        <  1:2579526/93‑1 (MQ=255)
                                                                                gcAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACaaa        <  2:4856820/92‑1 (MQ=255)
                                                                                  aaCACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATc      >  2:5913370/1‑93 (MQ=255)
                                                                                  aaCACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATc      <  2:4464607/93‑1 (MQ=255)
                                                                                   acacGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCt     <  1:483468/93‑1 (MQ=255)
                                                                                    cacGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTa    <  2:1527608/93‑1 (MQ=255)
                                                                                    cacGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTa    <  1:720962/93‑1 (MQ=255)
                                                                                     acGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTAc   <  2:107248/93‑1 (MQ=255)
                                                                                          |                                                                                        
TGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGTACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACG  >  NC_000913/3021718‑3021896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGTACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCC  >  NC_000913/3021715‑3021901
                                                                                             |                                                                                             
CTTTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGC                                                                                               >  SRR4302537.2183846/1‑94 (MQ=60)
CTTTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGC                                                                                               <  SRR4302537.4209296/94‑1 (MQ=60)
CTTTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGC                                                                                               >  SRR4302537.6091418/1‑94 (MQ=60)
  TTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCAC                                                                                             <  SRR4302537.2809532/94‑1 (MQ=60)
    GGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGG                                                                                           >  SRR4302537.2218063/1‑94 (MQ=60)
     GTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGG                                                                                          <  SRR4302537.380185/94‑1 (MQ=60)
      TTCACTGGTGGGAACTGTCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGT                                                                                         <  SRR4302537.6095620/94‑1 (MQ=60)
      TTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGT                                                                                         >  SRR4302537.878738/1‑94 (MQ=60)
       TCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTG                                                                                        >  SRR4302537.3332134/1‑94 (MQ=60)
       TCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTG                                                                                        <  SRR4302537.1350482/94‑1 (MQ=60)
       TCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTG                                                                                        >  SRR4302537.471961/1‑94 (MQ=60)
         ACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAA                                                                                      >  SRR4302537.5265695/1‑94 (MQ=60)
         ACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAA                                                                                      >  SRR4302537.5032780/1‑94 (MQ=60)
           TGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAAT                                                                                    >  SRR4302537.437680/1‑94 (MQ=60)
            GGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATC                                                                                   >  SRR4302537.781096/1‑94 (MQ=60)
            GGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATC                                                                                   <  SRR4302537.3365580/94‑1 (MQ=60)
              TGGGAACTGGCAGTTATATCGCGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCG                                                                                 <  SRR4302537.492836/94‑1 (MQ=60)
              TGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCG                                                                                 >  SRR4302537.3235323/1‑94 (MQ=60)
                gatctattccgtaactTCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCC                                                                               <  SRR4302537.5279193/78‑1 (MQ=60)
                 GAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCT                                                                              <  SRR4302537.4020208/94‑1 (MQ=60)
                 GAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCT                                                                              <  SRR4302537.3109995/94‑1 (MQ=60)
                 GAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCT                                                                              <  SRR4302537.3036833/94‑1 (MQ=60)
                  AACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTG                                                                             <  SRR4302537.1687208/94‑1 (MQ=60)
                   ACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGG                                                                            <  SRR4302537.2197524/94‑1 (MQ=60)
                   ACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGG                                                                            >  SRR4302537.6008145/1‑94 (MQ=60)
                   ACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGG                                                                            >  SRR4302537.432617/1‑94 (MQ=60)
                   ACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGG                                                                            <  SRR4302537.1271120/94‑1 (MQ=60)
                    CTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGA                                                                           >  SRR4302537.6242585/1‑94 (MQ=60)
                     TGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGAT                                                                          >  SRR4302537.6093169/1‑94 (MQ=60)
                     TGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGAT                                                                          >  SRR4302537.2501486/1‑94 (MQ=60)
                      GGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATA                                                                         <  SRR4302537.5105837/94‑1 (MQ=60)
                      GGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATA                                                                         >  SRR4302537.3784840/1‑94 (MQ=60)
                        CAGTTATATCGCGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAA                                                                       <  SRR4302537.3623649/94‑1 (MQ=60)
                        CAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAA                                                                       <  SRR4302537.1955405/94‑1 (MQ=60)
                         AGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAAT                                                                      <  SRR4302537.1063208/94‑1 (MQ=60)
                         AGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAAT                                                                      >  SRR4302537.2994018/1‑94 (MQ=60)
                         AGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAAT                                                                      >  SRR4302537.365045/1‑94 (MQ=60)
                          GTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATT                                                                     >  SRR4302537.4857026/1‑94 (MQ=60)
                          GTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATT                                                                     >  SRR4302537.3848420/1‑94 (MQ=60)
                            TATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCT                                                                   >  SRR4302537.1502635/1‑94 (MQ=60)
                               ATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACG                                                                <  SRR4302537.3899597/94‑1 (MQ=60)
                               ATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACG                                                                <  SRR4302537.5821677/94‑1 (MQ=60)
                                 CACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCC                                                              >  SRR4302537.4538975/1‑94 (MQ=60)
                                   CGCCTGATTTCGCGTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTT                                                            <  SRR4302537.204575/94‑1 (MQ=60)
                                   CGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTT                                                            <  SRR4302537.3554124/94‑1 (MQ=60)
                                   CGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTT                                                            >  SRR4302537.2293686/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          >  SRR4302537.5580524/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          >  SRR4302537.5692456/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          >  SRR4302537.5571079/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          >  SRR4302537.1485866/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          <  SRR4302537.746011/94‑1 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          >  SRR4302537.3618258/1‑94 (MQ=60)
                                     CCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGC                                                          <  SRR4302537.2913080/94‑1 (MQ=60)
                                      CTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCT                                                         >  SRR4302537.1123540/1‑94 (MQ=60)
                                      CTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCT                                                         <  SRR4302537.1260489/94‑1 (MQ=60)
                                       TGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTG                                                        <  SRR4302537.2249396/94‑1 (MQ=60)
                                       TGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTG                                                        <  SRR4302537.2249397/94‑1 (MQ=60)
                                       TGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTG                                                        >  SRR4302537.4322099/1‑94 (MQ=60)
                                        GATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGG                                                       >  SRR4302537.4382248/1‑94 (MQ=60)
                                         ATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGA                                                      <  SRR4302537.1522001/94‑1 (MQ=60)
                                         ATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGA                                                      >  SRR4302537.6327879/1‑94 (MQ=60)
                                          TTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGAC                                                     >  SRR4302537.1419375/1‑94 (MQ=60)
                                           TTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACT                                                    <  SRR4302537.471066/94‑1 (MQ=60)
                                            TCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTG                                                   <  SRR4302537.4338539/94‑1 (MQ=60)
                                             CGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGC                                                  >  SRR4302537.5115799/1‑94 (MQ=60)
                                             CGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGC                                                  >  SRR4302537.1322464/1‑94 (MQ=60)
                                                CTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGT                                               <  SRR4302537.244391/94‑1 (MQ=60)
                                                 TTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTA                                              <  SRR4302537.4803661/94‑1 (MQ=60)
                                                 TTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTA                                              >  SRR4302537.3909095/1‑94 (MQ=60)
                                                 TTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTA                                              <  SRR4302537.3180994/94‑1 (MQ=60)
                                                  TCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTAC                                             <  SRR4302537.6470993/94‑1 (MQ=60)
                                                    CCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACAC                                           >  SRR4302537.2376842/1‑94 (MQ=60)
                                                     CGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACC                                          >  SRR4302537.3956293/1‑94 (MQ=60)
                                                      GTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCG                                         >  SRR4302537.2448241/1‑94 (MQ=60)
                                                      GTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCG                                         <  SRR4302537.6379313/94‑1 (MQ=60)
                                                      GTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCG                                         >  SRR4302537.2388741/1‑94 (MQ=60)
                                                       TATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGG                                        >  SRR4302537.5277263/1‑94 (MQ=60)
                                                        ATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGT                                       >  SRR4302537.231689/1‑94 (MQ=60)
                                                        ATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGT                                       >  SRR4302537.640173/1‑94 (MQ=60)
                                                          GGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCA                                     <  SRR4302537.499692/94‑1 (MQ=60)
                                                            CGCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAAT                                   >  SRR4302537.1354392/1‑94 (MQ=60)
                                                             GCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATC                                  >  SRR4302537.2436754/1‑94 (MQ=60)
                                                             GCAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATC                                  >  SRR4302537.375679/1‑94 (MQ=60)
                                                              CAAACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCC                                 >  SRR4302537.695403/1‑94 (MQ=60)
                                                                AACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAG                               >  SRR4302537.4304395/1‑94 (MQ=60)
                                                                AACTTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAG                               >  SRR4302537.2112523/1‑94 (MQ=60)
                                                                   TTCGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGT                            <  SRR4302537.3275885/94‑1 (MQ=60)
                                                                     CGCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTA                          <  SRR4302537.5621945/94‑1 (MQ=60)
                                                                      GCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAG                         >  SRR4302537.4986264/1‑94 (MQ=60)
                                                                      GCTGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAG                         <  SRR4302537.1291676/94‑1 (MQ=60)
                                                                        TGAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCG                       <  SRR4302537.4006470/94‑1 (MQ=60)
                                                                         GAAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGT                      <  SRR4302537.3302915/94‑1 (MQ=60)
                                                                          AAGTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTT                     >  SRR4302537.1936048/1‑94 (MQ=60)
                                                                            GTTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGG                   <  SRR4302537.3797702/94‑1 (MQ=60)
                                                                             TTGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACAACGGTCAATCCAGAGTTAGCGTTGGG                  >  SRR4302537.6040577/1‑94 (MQ=60)
                                                                              TGCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGA                 >  SRR4302537.1343385/1‑94 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                <  SRR4302537.1352841/94‑1 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                >  SRR4302537.312274/1‑94 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                >  SRR4302537.2894210/1‑94 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                <  SRR4302537.2614251/94‑1 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                <  SRR4302537.5744567/94‑1 (MQ=60)
                                                                               GCCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGAC                <  SRR4302537.5744561/94‑1 (MQ=60)
                                                                                CCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACA               >  SRR4302537.5614963/1‑94 (MQ=60)
                                                                                CCGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACA               >  SRR4302537.4430179/1‑94 (MQ=60)
                                                                                 CGTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAA              >  SRR4302537.3392981/1‑94 (MQ=60)
                                                                                  GTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAA             >  SRR4302537.1628928/1‑94 (MQ=60)
                                                                                  GTCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAA             >  SRR4302537.1762739/1‑94 (MQ=60)
                                                                                   TCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAAT            <  SRR4302537.1246390/94‑1 (MQ=60)
                                                                                   TCAACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAAT            <  SRR4302537.2597583/94‑1 (MQ=60)
                                                                                      ACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTA         <  SRR4302537.2381058/94‑1 (MQ=60)
                                                                                      ACACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTA         <  SRR4302537.486780/94‑1 (MQ=60)
                                                                                       CACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTAC        <  SRR4302537.4305683/94‑1 (MQ=60)
                                                                                       CACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTAC        <  SRR4302537.725884/94‑1 (MQ=60)
                                                                                        ACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACG       <  SRR4302537.1755279/94‑1 (MQ=60)
                                                                                        ACGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACG       <  SRR4302537.884572/94‑1 (MQ=60)
                                                                                         CGCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGG      <  SRR4302537.868582/94‑1 (MQ=60)
                                                                                          GCGCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGT     >  SRR4302537.759868/1‑94 (MQ=60)
                                                                                            GCACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGATACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGC   >  SRR4302537.5417710/1‑94 (MQ=60)
                                                                                             CACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCC  >  SRR4302537.5253932/1‑94 (MQ=60)
                                                                                             CACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCC  <  SRR4302537.4633502/94‑1 (MQ=60)
                                                                                             CACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCC  <  SRR4302537.465762/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTTTGGTTCACTGGTGGGAACTGGCAGTTATATCACGCCTGATTTCGCCTTCCCGTATGGCGCAAACTTCGCTGAAGTTGCCGTCAACACGCGTACGGGTGAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCC  >  NC_000913/3021715‑3021901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑