Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,118,108 |
A→G |
G396G (GGT→GGC) |
yghK ← |
putative permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,118,108 | 0 | A | G | 100.0%
| 837.3
/ NA
| 240 | G396G (GGT→GGC) | yghK | putative permease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/104); total (136/104) |
Only 100 of 250 total aligned reads displayed.
GAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACACCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGG > NC_000913/3118018‑3118197
|
gAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGcc > 2:4807838/1‑93 (MQ=255)
aaCGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCg > 1:6347871/1‑93 (MQ=255)
aCGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGa < 2:5324431/93‑1 (MQ=255)
cGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAg > 2:252555/1‑93 (MQ=255)
gCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAgg > 2:3806282/1‑93 (MQ=255)
gCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAgg > 1:6231427/1‑93 (MQ=255)
ccAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGa > 1:3210921/1‑93 (MQ=255)
ccAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGa > 1:2198268/1‑93 (MQ=255)
ccAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGa < 2:212495/93‑1 (MQ=255)
aGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGTCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATg > 2:4049439/1‑93 (MQ=255)
gCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGa < 1:2876236/93‑1 (MQ=255)
cATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGAt > 2:2839346/1‑93 (MQ=255)
cATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGAt < 2:5744368/93‑1 (MQ=255)
cATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGAt < 1:245261/93‑1 (MQ=255)
aTGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATa < 1:1196571/93‑1 (MQ=255)
tGCCATTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATag < 1:465632/93‑1 (MQ=255)
tGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATag > 1:187089/1‑93 (MQ=255)
tGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATag > 1:1697842/1‑93 (MQ=255)
gCCAATCGACAGTATCGGCCACTTCAAGCTAATTGGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATaga < 1:1522690/93‑1 (MQ=255)
gCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATaga < 1:4967749/93‑1 (MQ=255)
gCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATaga < 1:5457385/93‑1 (MQ=255)
cAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAgaga < 1:3318363/93‑1 (MQ=255)
cAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAgaga < 1:3463058/93‑1 (MQ=255)
cAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAgaga > 2:5438639/1‑93 (MQ=255)
aaTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAt < 2:1693955/93‑1 (MQ=255)
aaTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAt < 2:4764964/93‑1 (MQ=255)
aTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATa < 1:3281475/93‑1 (MQ=255)
aTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGAAAAGACGACAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATa < 1:6004250/93‑1 (MQ=255)
cGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAAt > 1:4669623/1‑93 (MQ=255)
gACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATc > 2:1654034/1‑93 (MQ=255)
aCAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcg > 1:5755576/1‑93 (MQ=255)
cAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcgc > 1:187905/1‑93 (MQ=255)
cAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcgc > 2:4751196/1‑93 (MQ=255)
cAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcgc < 1:5381438/93‑1 (MQ=255)
aGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcgcc > 1:228429/1‑93 (MQ=255)
tATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATcgccgc > 1:4147877/1‑93 (MQ=255)
aTCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCa > 2:6018826/1‑93 (MQ=255)
ggCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATa < 1:5071938/93‑1 (MQ=255)
ggCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATa > 2:6111307/1‑93 (MQ=255)
gCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATaa > 2:3127898/1‑93 (MQ=255)
gCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATaa < 2:184548/93‑1 (MQ=255)
ccACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATaaa < 1:3539268/93‑1 (MQ=255)
ccACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGACATaaa > 2:1476835/1‑93 (MQ=255)
cACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATaaaa > 2:149613/1‑93 (MQ=255)
aCTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATaaaaa < 2:2883606/93‑1 (MQ=255)
tCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAg > 2:112354/1‑93 (MQ=255)
tCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAg > 2:3440861/1‑93 (MQ=255)
cAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGc < 1:4190978/93‑1 (MQ=255)
cAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGc < 1:260162/93‑1 (MQ=255)
aGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCgg < 2:2079756/93‑1 (MQ=255)
aGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCgg < 2:3536702/93‑1 (MQ=255)
gCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGt > 1:840253/1‑93 (MQ=255)
gCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGt < 1:938455/93‑1 (MQ=255)
gCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGt > 1:2460288/1‑93 (MQ=255)
gCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGt < 1:1604541/93‑1 (MQ=255)
tAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgc < 1:4579312/93‑1 (MQ=255)
tAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgc > 2:3987969/1‑93 (MQ=255)
tAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgc > 1:1094315/1‑93 (MQ=255)
aaTTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgcc > 2:6063927/1‑93 (MQ=255)
ttAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgccgc > 1:3006283/1‑93 (MQ=255)
ttAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgccgc > 2:30126/1‑93 (MQ=255)
tAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgccgcc > 2:4589767/1‑93 (MQ=255)
tAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTgccgcc < 1:3638239/93‑1 (MQ=255)
aGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCa < 1:5277310/93‑1 (MQ=255)
cGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGc < 1:2774148/93‑1 (MQ=255)
gTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGcc > 2:552526/1‑93 (MQ=255)
ttCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCGGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCga < 1:2697138/93‑1 (MQ=255)
ttCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCga < 1:5736015/93‑1 (MQ=255)
ttCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCga > 1:4057402/1‑93 (MQ=255)
ggCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGagag < 2:4342757/93‑1 (MQ=255)
ggCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGagag < 1:1664015/93‑1 (MQ=255)
gCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAgg > 2:4902105/1‑93 (MQ=255)
gCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAgg > 2:677250/1‑93 (MQ=255)
cAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAggg < 1:2518000/93‑1 (MQ=255)
cAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAggg < 2:2511382/93‑1 (MQ=255)
cAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAggg < 1:4867621/93‑1 (MQ=255)
aaGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAggggg > 2:620410/1‑93 (MQ=255)
aaGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAggggg > 2:2347360/1‑93 (MQ=255)
gACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTc > 1:4041539/1‑93 (MQ=255)
aCGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCg > 1:4296184/1‑93 (MQ=255)
aCGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCg < 2:4629336/93‑1 (MQ=255)
cGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGa > 1:3792841/1‑93 (MQ=255)
cGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGa > 1:6046191/1‑93 (MQ=255)
gCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGaa < 2:6412771/93‑1 (MQ=255)
ccAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAAt < 2:2763614/93‑1 (MQ=255)
attccTTTCTTGATCCCCACGCCGAAGATGAAGGTAGAGATAATCGCCCCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTa < 1:2222759/90‑1 (MQ=255)
aCCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTaaa > 1:3087353/1‑93 (MQ=255)
cTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAaca > 2:1270322/1‑93 (MQ=255)
tttCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAacac < 2:5213168/93‑1 (MQ=255)
ttCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACAcc > 1:3678841/1‑93 (MQ=255)
gATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATc > 2:2681657/1‑93 (MQ=255)
aTCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATcc > 1:3977636/1‑93 (MQ=255)
tCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCa > 2:2298005/1‑93 (MQ=255)
tCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCa > 2:2264853/1‑93 (MQ=255)
tCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCa < 2:825196/93‑1 (MQ=255)
ccccACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCAt < 2:5056028/93‑1 (MQ=255)
ccccACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAAGAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCAt < 2:3787194/93‑1 (MQ=255)
cccACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCAtt < 1:2324538/93‑1 (MQ=255)
cccACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCAtt < 2:4094418/93‑1 (MQ=255)
ccACGCCGCGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTg > 2:6309216/1‑93 (MQ=255)
|
GAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACACCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGG > NC_000913/3118018‑3118197
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACACCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGGCGTT > NC_000913/3118017‑3118201
|
CGAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCC < SRR4302537.3213375/94‑1 (MQ=60)
GAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCG > SRR4302537.6391223/1‑94 (MQ=60)
ACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAG > SRR4302537.3420301/1‑94 (MQ=60)
CGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGG > SRR4302537.6274291/1‑94 (MQ=60)
GCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGA > SRR4302537.2213756/1‑94 (MQ=60)
GCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGA > SRR4302537.3233504/1‑94 (MQ=60)
CCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGAT > SRR4302537.3054618/1‑94 (MQ=60)
CAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATG > SRR4302537.5151052/1‑94 (MQ=60)
CAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATG > SRR4302537.3332618/1‑94 (MQ=60)
GCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAA < SRR4302537.2896419/94‑1 (MQ=60)
GCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAA < SRR4302537.1693311/94‑1 (MQ=60)
GCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAA < SRR4302537.1786474/94‑1 (MQ=60)
GCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAA > SRR4302537.5101156/1‑94 (MQ=60)
CCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGAT > SRR4302537.2493913/1‑94 (MQ=60)
CATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATA < SRR4302537.4663311/94‑1 (MQ=60)
CATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATA < SRR4302537.247000/94‑1 (MQ=60)
CATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATA > SRR4302537.2253732/1‑94 (MQ=60)
CATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATA < SRR4302537.5786510/94‑1 (MQ=60)
ATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAG < SRR4302537.3806062/94‑1 (MQ=60)
ATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAG < SRR4302537.2204639/94‑1 (MQ=60)
ATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAG > SRR4302537.188418/1‑94 (MQ=60)
ATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAG > SRR4302537.1709715/1‑94 (MQ=60)
ATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAG < SRR4302537.1204879/94‑1 (MQ=60)
TGCCATTCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGA < SRR4302537.468835/94‑1 (MQ=60)
TGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGA > SRR4302537.2214439/1‑94 (MQ=60)
TGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGA < SRR4302537.2804521/94‑1 (MQ=60)
GCCAATCGACAGTATCGGCCACTTCAAGCTAATTGGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAG < SRR4302537.1533328/94‑1 (MQ=60)
GCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAG < SRR4302537.5494608/94‑1 (MQ=60)
GCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAG < SRR4302537.5001986/94‑1 (MQ=60)
GCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAG < SRR4302537.3958163/94‑1 (MQ=60)
CAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAT < SRR4302537.3341840/94‑1 (MQ=60)
CAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAT < SRR4302537.6229320/94‑1 (MQ=60)
CAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAT > SRR4302537.1637804/1‑94 (MQ=60)
CAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGAT < SRR4302537.3487544/94‑1 (MQ=60)
AATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATA < SRR4302537.4236603/94‑1 (MQ=60)
AATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATA > SRR4302537.4080881/1‑94 (MQ=60)
ATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAA < SRR4302537.3304641/94‑1 (MQ=60)
ATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAA > SRR4302537.112595/1‑94 (MQ=60)
ATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAA < SRR4302537.4350634/94‑1 (MQ=60)
ATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGAAAAGACGACAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAA < SRR4302537.6045498/94‑1 (MQ=60)
TCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAAT > SRR4302537.4701930/1‑94 (MQ=60)
CGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATC > SRR4302537.944469/1‑94 (MQ=60)
GACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCG > SRR4302537.5794997/1‑94 (MQ=60)
GACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCG < SRR4302537.2395912/94‑1 (MQ=60)
ACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGC > SRR4302537.189238/1‑94 (MQ=60)
CAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCC < SRR4302537.5418237/94‑1 (MQ=60)
CAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCC > SRR4302537.230046/1‑94 (MQ=60)
AGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCG > SRR4302537.426891/1‑94 (MQ=60)
GTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGC > SRR4302537.3594385/1‑94 (MQ=60)
GTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGC > SRR4302537.4176827/1‑94 (MQ=60)
GTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGC > SRR4302537.6475710/1‑94 (MQ=60)
GGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAA > SRR4302537.2997646/1‑94 (MQ=60)
GGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAA < SRR4302537.5106859/94‑1 (MQ=60)
GCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAA > SRR4302537.5564496/1‑94 (MQ=60)
CCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAA < SRR4302537.3564264/94‑1 (MQ=60)
CCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAA > SRR4302537.5057609/1‑94 (MQ=60)
CCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAA > SRR4302537.2471560/1‑94 (MQ=60)
CACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAA > SRR4302537.548744/1‑94 (MQ=60)
CACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAA > SRR4302537.1842086/1‑94 (MQ=60)
ACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAAT < SRR4302537.418765/94‑1 (MQ=60)
TCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGC > SRR4302537.1256615/1‑94 (MQ=60)
TCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGC < SRR4302537.4659843/94‑1 (MQ=60)
CAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCG < SRR4302537.4220251/94‑1 (MQ=60)
CAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCG < SRR4302537.261998/94‑1 (MQ=60)
AAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGG < SRR4302537.5414949/94‑1 (MQ=60)
AAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGG > SRR4302537.3677620/1‑94 (MQ=60)
AAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGG > SRR4302537.2333550/1‑94 (MQ=60)
AGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGT > SRR4302537.4154060/1‑94 (MQ=60)
AGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGT > SRR4302537.846010/1‑94 (MQ=60)
AGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGT > SRR4302537.2477589/1‑94 (MQ=60)
AGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGT < SRR4302537.2613119/94‑1 (MQ=60)
GCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTG < SRR4302537.1615764/94‑1 (MQ=60)
GCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTG < SRR4302537.944925/94‑1 (MQ=60)
CTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGC > SRR4302537.1101875/1‑94 (MQ=60)
CTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGC > SRR4302537.4855091/1‑94 (MQ=60)
TAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCC < SRR4302537.4610993/94‑1 (MQ=60)
TAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCC < SRR4302537.1672201/94‑1 (MQ=60)
TAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCC > SRR4302537.349002/1‑94 (MQ=60)
ATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGC > SRR4302537.6375865/1‑94 (MQ=60)
ATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGC > SRR4302537.3027217/1‑94 (MQ=60)
TAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCA < SRR4302537.3663856/94‑1 (MQ=60)
TAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCA < SRR4302537.2286278/94‑1 (MQ=60)
TAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCA > SRR4302537.3350970/1‑94 (MQ=60)
AGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAG > SRR4302537.6197689/1‑94 (MQ=60)
AGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAG > SRR4302537.5688393/1‑94 (MQ=60)
AGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAG < SRR4302537.5313622/94‑1 (MQ=60)
CGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCC < SRR4302537.2793541/94‑1 (MQ=60)
GTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCG > SRR4302537.3624141/1‑94 (MQ=60)
TTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGA > SRR4302537.4085754/1‑94 (MQ=60)
TTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCGGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAG < SRR4302537.2715979/94‑1 (MQ=60)
TTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAG < SRR4302537.5775291/94‑1 (MQ=60)
CGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAG > SRR4302537.5356573/1‑94 (MQ=60)
CGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAG < SRR4302537.1885658/94‑1 (MQ=60)
CGGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAG < SRR4302537.3190565/94‑1 (MQ=60)
GGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGG > SRR4302537.6061858/1‑94 (MQ=60)
GGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGG < SRR4302537.4045831/94‑1 (MQ=60)
GGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGG > SRR4302537.4122248/1‑94 (MQ=60)
GGCAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGG < SRR4302537.1675676/94‑1 (MQ=60)
CGCAAAGACGCCAATACCTTTCGTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGG < SRR4302537.2660284/94‑1 (MQ=60)
GCAAAAACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAATATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGG < SRR4302537.1586891/94‑1 (MQ=60)
CAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGG < SRR4302537.4694266/94‑1 (MQ=60)
CAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGG < SRR4302537.2535690/94‑1 (MQ=60)
CAAAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGG < SRR4302537.4901209/94‑1 (MQ=60)
AAGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGT > SRR4302537.6469133/1‑94 (MQ=60)
AAGACGCCAATACCTTTCTTGATCCCCAAGCGGAGGATGAAGATAGAGATAATCGCGGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGT < SRR4302537.1893436/94‑1 (MQ=60)
AGACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTC > SRR4302537.4069808/1‑94 (MQ=60)
GACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCG > SRR4302537.4326050/1‑94 (MQ=60)
ACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGA > SRR4302537.30502/1‑94 (MQ=60)
ACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGA > SRR4302537.6087714/1‑94 (MQ=60)
ACGCCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGA > SRR4302537.3819461/1‑94 (MQ=60)
CCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATT > SRR4302537.3274599/1‑94 (MQ=60)
CCAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATT > SRR4302537.5918555/1‑94 (MQ=60)
CAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTT > SRR4302537.2753656/1‑94 (MQ=60)
CAATACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTT > SRR4302537.2344916/1‑94 (MQ=60)
ATTCCTTTCTTGATCCCCACGCCGAAGATGAAGGTAGAGATAATCGCCCCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAA < SRR4302537.2238417/94‑1 (MQ=60)
TACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAA > SRR4302537.3108891/1‑94 (MQ=60)
ACCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAAC < SRR4302537.3285257/94‑1 (MQ=60)
CCTTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACA < SRR4302537.965281/94‑1 (MQ=60)
TTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAATATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACC < SRR4302537.2833651/94‑1 (MQ=60)
TTTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACC > SRR4302537.3704723/1‑94 (MQ=60)
TTCTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCG > SRR4302537.5975270/1‑94 (MQ=60)
CTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCA > SRR4302537.2483100/1‑94 (MQ=60)
CTTGATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCA > SRR4302537.3707866/1‑94 (MQ=60)
TTGATCCCCACGCAGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCAT < SRR4302537.1325221/94‑1 (MQ=60)
GATCCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCC > SRR4302537.4005475/1‑94 (MQ=60)
CCCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATT < SRR4302537.4910318/94‑1 (MQ=60)
CCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTG < SRR4302537.4021644/94‑1 (MQ=60)
CCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTG < SRR4302537.2340945/94‑1 (MQ=60)
CCCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTG > SRR4302537.4787437/1‑94 (MQ=60)
CCACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGG > SRR4302537.2633346/1‑94 (MQ=60)
CACGCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGGC > SRR4302537.4444501/1‑94 (MQ=60)
GCCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACAGCATCCATTGGCGTT > SRR4302537.3853942/1‑94 (MQ=60)
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CGAACGCCAGCACCATGCCAATCGACAGTATCGGCCACTTCAAGCTAATTAGCGTTTCGGCAAAGACGCCAATACCTTTCTTGATCCCCACACCGAGGATGAAGATAGAGATAATCGCCGCAATAAAAATAGCGGTGCCGCCAGCCGAGAGGGGGTCGAATTTAAACACCGCATCCATTGGCGTT > NC_000913/3118017‑3118201
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
