Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,152,247	+C	intergenic (+10/+29)	yghB → / ← yqhC	hypothetical protein/putative ARAC‑type regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,152,244	1	.	C	99.5%	669.0 / ‑4.2	189	intergenic (+7/+32)	yghB/yqhC	hypothetical protein/putative ARAC‑type regulatory protein
Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (121/67); total (121/68)
Fisher's exact test for biased strand distribution p-value = 3.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 230 total aligned reads displayed.

TGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG  >  NC_000913/3152152‑3152333

tgatgaTCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAtttt                                                                                            >  2:5365914/1‑93 (MQ=255)

 gatgatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTCACGCCTGACGATTtt‑c                                                                                          >  1:1945654/1‑93 (MQ=255)

 gatgatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑c                                                                                          <  2:6359529/93‑1 (MQ=255)

 gatgatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑c                                                                                          <  1:4488928/93‑1 (MQ=255)

 gatgatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑c                                                                                          >  1:5882673/1‑93 (MQ=255)

  atgatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑cc                                                                                         <  2:1009325/93‑1 (MQ=255)

    gatCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑cccc                                                                                       >  1:5494709/1‑92 (MQ=255)

      tCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTtt‑cccact                                                                                     >  2:1142493/1‑90 (MQ=255)

         tGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTtccccgttcc                                                                                   >  2:2059716/1‑93 (MQ=255)

         tGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTtccccgttcc                                                                                   <  2:107363/93‑1 (MQ=255)

         tGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTtccccgttcc                                                                                   >  1:5761998/1‑93 (MQ=255)

          gCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTtccccgttccc                                                                                  <  2:5867964/93‑1 (MQ=255)

          gCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTtccccgttccc                                                                                  <  1:4351341/93‑1 (MQ=255)

            cAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCgg                                                                                >  1:3158996/1‑93 (MQ=255)

             aaTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGt                                                                               >  2:542794/1‑93 (MQ=255)

             aaTTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGt                                                                               <  1:3565312/93‑1 (MQ=255)

               ttGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTg                                                                             <  1:1077228/93‑1 (MQ=255)

                 gCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCt                                                                           >  2:1889529/1‑93 (MQ=255)

                  ccTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAAATACTGTAACGACTGACGATTTTCCCCGTTCCCCGTTggt                                                                           >  1:1281765/1‑91 (MQ=255)

                   cTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGt                                                                         >  1:3720639/1‑93 (MQ=255)

                   cTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGt                                                                         >  2:2683438/1‑93 (MQ=255)

                    ttGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTa                                                                        >  1:2900372/1‑93 (MQ=255)

                     tGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTAc                                                                       <  1:2981957/93‑1 (MQ=255)

                     tGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTAc                                                                       <  1:3820936/93‑1 (MQ=255)

                      gTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTAcc                                                                      <  2:3121017/93‑1 (MQ=255)

                            cGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAAc                                                                <  2:3441694/93‑1 (MQ=255)

                            cGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAAc                                                                >  1:4572417/1‑93 (MQ=255)

                            cGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAAc                                                                <  2:5113552/93‑1 (MQ=255)

                             gCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACg                                                               >  2:1602922/1‑93 (MQ=255)

                               tGGCTTGTTAGGCACGCTTTTTGTGTTAATT‑‑AAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAt                                                            <  2:779668/93‑1 (MQ=255)

                               tGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTa                                                             >  1:5298298/1‑93 (MQ=255)

                               tGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTa                                                             >  2:590684/1‑93 (MQ=255)

                               tGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTa                                                             <  2:1192299/93‑1 (MQ=255)

                                 gCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAtt                                                           >  1:5372813/1‑93 (MQ=255)

                                  cTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAttt                                                          <  2:4472053/93‑1 (MQ=255)

                                   ttGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTa                                                         >  2:5760924/1‑93 (MQ=255)

                                     gTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAt                                                       >  2:6172671/1‑93 (MQ=255)

                                     gTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAt                                                       <  1:5217320/93‑1 (MQ=255)

                                     gTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCCGTTGCTGTACCGGGAACGGATTTAAt                                                       >  1:2687/1‑93 (MQ=255)

                                      ttAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAtt                                                      >  2:3692879/1‑93 (MQ=255)

                                      ttAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAtt                                                      >  2:1652739/1‑93 (MQ=255)

                                       tAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTc                                                     >  1:2008641/1‑93 (MQ=255)

                                         ggCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTccc                                                   >  1:2175115/1‑93 (MQ=255)

                                          gCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTcccc                                                  <  1:1735955/93‑1 (MQ=255)

                                          gCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTcccc                                                  <  2:1827316/93‑1 (MQ=255)

                                             cGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGc                                               <  2:4351519/93‑1 (MQ=255)

                                              gCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCa                                              >  2:3836108/1‑93 (MQ=255)

                                               cTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAt                                             <  2:1457700/93‑1 (MQ=255)

                                               cTGTTTGTGGGGATT‑AAAATAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAt                                             >  2:6331210/1‑93 (MQ=255)

                                                tGTTTGTGGTGATT‑AAAAAAAAATACTGTACCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATc                                            <  2:2930420/93‑1 (MQ=255)

                                                tGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATc                                            <  2:4075393/93‑1 (MQ=255)

                                                tGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCCGGAACGTATTTAATTCCCCTGCATc                                            >  1:1903386/1‑93 (MQ=255)

                                                   ttGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGcc                                         <  1:867809/93‑1 (MQ=255)

                                                   ttGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGcc                                         <  2:5494346/93‑1 (MQ=255)

                                                    tgtgGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGccc                                        >  1:561472/1‑93 (MQ=255)

                                                      tggtgATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGc                                      <  2:3942910/93‑1 (MQ=255)

                                                      tggtgATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGc                                      >  1:788051/1‑93 (MQ=255)

                                                       ggtgATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCa                                     >  1:6375842/1‑93 (MQ=255)

                                                         tgATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCAtt                                   <  1:1201192/93‑1 (MQ=255)

                                                          gATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTc                                  >  2:1971500/1‑93 (MQ=255)

                                                          gATT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTc                                  >  1:6114421/1‑93 (MQ=255)

                                                           aTT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCt                                 >  2:3286028/1‑93 (MQ=255)

                                                           aTT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCt                                 <  2:5282830/93‑1 (MQ=255)

                                                           aTT‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCt                                 >  1:3936395/1‑93 (MQ=255)

                                                            at‑AAAAAAAAATACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCtt                                <  1:747211/92‑1 (MQ=255)

                                                                aaaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTTcc                             >  2:5976290/1‑93 (MQ=255)

                                                                 aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCg                            >  2:281034/1‑93 (MQ=255)

                                                                 aaaaaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCACCTGCATCGCCCGCATTCTTGCCg                            >  2:3055220/1‑93 (MQ=255)

                                                                    aaaaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTTCCCTGCATCGCCCGCATTCTTGCCGCAt                         >  2:657626/1‑93 (MQ=255)

                                                                     aaaTACTGTACCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATc                        <  1:6019616/93‑1 (MQ=255)

                                                                      aaTACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCt                       >  1:4605139/1‑93 (MQ=255)

                                                                        tACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTc                     >  1:3670352/1‑93 (MQ=255)

                                                                        tACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTACCCTGCATCGCCCGCATTCTTGCCGCATCTTc                     >  1:2931690/1‑93 (MQ=255)

                                                                        tACTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGGACCGGGGACGTATTTAATTTCCCTGCATCGCCCGCATTCTTGCCGCCTCTTc                     >  2:5528800/1‑93 (MQ=255)

                                                                         aCTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcc                    >  2:2156585/1‑93 (MQ=255)

                                                                         aCTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcc                    >  1:6187884/1‑93 (MQ=255)

                                                                          cTGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGGACGTATTTAATTCCCCTGCATCGCCCGCCTTCTTGCCGCATCTTccc                   >  2:3647263/1‑93 (MQ=255)

                                                                           tGTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTcccc                  >  2:1720140/1‑93 (MQ=255)

                                                                            gTAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTccccc                 >  2:1857889/1‑93 (MQ=255)

                                                                             tAACGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCg                <  2:2443026/93‑1 (MQ=255)

                                                                              aaCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTTCCCCgg               >  1:2374447/1‑93 (MQ=255)

                                                                              aaCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCgg               >  1:4249520/1‑93 (MQ=255)

                                                                              aaCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCgg               >  1:1372289/1‑93 (MQ=255)

                                                                              aaCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCgg               >  2:134550/1‑93 (MQ=255)

                                                                               aCGCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGc              >  2:2195756/1‑93 (MQ=255)

                                                                                 gCCTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCCGCGt            >  1:4831529/1‑93 (MQ=255)

                                                                                  ccTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTc           >  1:3353550/1‑93 (MQ=255)

                                                                                  ccTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTc           >  2:6430030/1‑93 (MQ=255)

                                                                                  ccTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTc           <  1:104940/93‑1 (MQ=255)

                                                                                   cTGACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcc          >  2:4768607/1‑92 (MQ=255)

                                                                                     gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcaca        >  1:2150124/1‑93 (MQ=255)

                                                                                     gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcaca        <  2:5170725/93‑1 (MQ=255)

                                                                                     gACGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTcaca        >  1:4230744/1‑93 (MQ=255)

                                                                                      aCGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCacac       <  2:3135991/93‑1 (MQ=255)

                                                                                      aCGATTTTCCCCGTTCCCGGGTGCTGTACCGGGAACGGATTTAATTTCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCacac       >  2:2349782/1‑93 (MQ=255)

                                                                                       cGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACAcc      <  1:6401422/93‑1 (MQ=255)

                                                                                       cGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACAcc      >  1:6252202/1‑93 (MQ=255)

                                                                                       cGATTTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACAcc      <  1:5436566/93‑1 (MQ=255)

                                                                                         ttttc‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGaa   >  1:1465732/2‑93 (MQ=255)

                                                                                         ttttc‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGaa   <  2:2287369/92‑1 (MQ=255)

TGATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATTTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG  >  NC_000913/3152152‑3152333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTT  >  NC_000913/3152154‑3152340

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCC                                                                                               >  SRR4302537.1267053/1‑94 (MQ=60)

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCC                                                                                               <  SRR4302537.4808910/94‑1 (MQ=60)

 TGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCC                                                                                              >  SRR4302537.5532223/1‑94 (MQ=60)

  GATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcg                                                                                             >  SRR4302537.5287516/1‑92 (MQ=60)

   ATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcgt                                                                                            >  SRR4302537.3089367/1‑91 (MQ=60)

   ATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcgt                                                                                            >  SRR4302537.5511905/1‑91 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCC                                                                                          >  SRR4302537.4261212/1‑94 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCC                                                                                          >  SRR4302537.5801471/1‑94 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCC                                                                                          >  SRR4302537.4412597/1‑94 (MQ=60)

      CTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcgtttc                                                                                         >  SRR4302537.1957507/1‑88 (MQ=60)

        GCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCG                                                                                        <  SRR4302537.5442736/94‑1 (MQ=60)

        GCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCG                                                                                        <  SRR4302537.4381483/94‑1 (MQ=60)

         CCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGG                                                                                       >  SRR4302537.4296756/1‑94 (MQ=60)

         CCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGG                                                                                       >  SRR4302537.3181168/1‑94 (MQ=60)

          CAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGT                                                                                      >  SRR4302537.2922438/1‑94 (MQ=60)

           AATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTT                                                                                     <  SRR4302537.3590457/94‑1 (MQ=60)

            ATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTG                                                                                    <  SRR4302537.2012540/94‑1 (MQ=60)

             TTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGC                                                                                   <  SRR4302537.3082041/94‑1 (MQ=60)

             TTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGC                                                                                   <  SRR4302537.1084656/94‑1 (MQ=60)

             TTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcgtacccggttac                                                                                  >  SRR4302537.3363529/1‑81 (MQ=60)

              TGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCT                                                                                  >  SRR4302537.4620388/1‑94 (MQ=60)

               GCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATTAAAAAAAAAATACTGTAACGACTGACGAT‑TTTCCCCGTTCCCCGTTGGT                                                                                  >  SRR4302537.1290675/1‑94 (MQ=60)

                CCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGT                                                                                >  SRR4302537.3746781/1‑94 (MQ=60)

                 CTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTA                                                                               >  SRR4302537.2920749/1‑94 (MQ=60)

                  TTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTAC                                                                              >  SRR4302537.6488081/1‑94 (MQ=60)

                  TTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTAC                                                                              >  SRR4302537.6203060/1‑94 (MQ=60)

                  TGGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTAC                                                                              <  SRR4302537.6000496/94‑1 (MQ=60)

                   TGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACC                                                                             <  SRR4302537.3002808/94‑1 (MQ=60)

                   TGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACC                                                                             <  SRR4302537.3847727/94‑1 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCG                                                                            <  SRR4302537.3906870/94‑1 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCG                                                                            >  SRR4302537.3837697/1‑94 (MQ=60)

                    GTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCG                                                                            >  SRR4302537.6436052/1‑94 (MQ=60)

                     TTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGG                                                                           >  SRR4302537.1859630/1‑94 (MQ=60)

                       AACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGA                                                                         >  SRR4302537.867632/1‑94 (MQ=60)

                         CCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAAC                                                                       >  SRR4302537.6130525/1‑94 (MQ=60)

                         CCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAAC                                                                       >  SRR4302537.4604069/1‑94 (MQ=60)

                          CGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACG                                                                      <  SRR4302537.2179284/94‑1 (MQ=60)

                          CGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACG                                                                      >  SRR4302537.1364362/1‑94 (MQ=60)

                            CTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTA                                                                    >  SRR4302537.5334693/1‑94 (MQ=60)

                            CTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTA                                                                    >  SRR4302537.6316081/1‑94 (MQ=60)

                            CTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTA                                                                    >  SRR4302537.1365293/1‑94 (MQ=60)

                             TGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTAT                                                                   <  SRR4302537.5165448/94‑1 (MQ=60)

                              GGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATT                                                                  >  SRR4302537.5409561/1‑94 (MQ=60)

                              GGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCCTTCCCGGTTGCTGgcccggggaagtgtt                                                                  >  SRR4302537.60648/1‑79 (MQ=60)

                               GCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTT                                                                 <  SRR4302537.611961/94‑1 (MQ=60)

                               GCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTT                                                                 <  SRR4302537.5465630/94‑1 (MQ=60)

                                CTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTACCCGGTTGCTGTACCGGGAACGTATTTA                                                                >  SRR4302537.1077965/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                              <  SRR4302537.4565935/94‑1 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                              >  SRR4302537.4419689/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAAT                                                              >  SRR4302537.1471628/1‑94 (MQ=60)

                                  TGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCCGTTGCTGTACCGGGAACGGATTTAAT                                                              >  SRR4302537.2706/1‑94 (MQ=60)

                                   GTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATT                                                             <  SRR4302537.5253199/94‑1 (MQ=60)

                                   GTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGCAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATT                                                             >  SRR4302537.3992848/1‑94 (MQ=60)

                                    TTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTC                                                            >  SRR4302537.2022640/1‑94 (MQ=60)

                                      AGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATGTTC‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCC                                                          <  SRR4302537.1871731/94‑1 (MQ=60)

                                      AGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCC                                                          >  SRR4302537.2190446/1‑94 (MQ=60)

                                        GCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGATCTCC‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                        <  SRR4302537.1476309/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                        <  SRR4302537.77298/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCT                                                        <  SRR4302537.1748064/94‑1 (MQ=60)

                                        GCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGCATTTAATTCCCCT                                                        >  SRR4302537.2599145/1‑94 (MQ=60)

                                         CACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTG                                                       >  SRR4302537.1932220/1‑94 (MQ=60)

                                           CGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCA                                                     >  SRR4302537.2766573/1‑94 (MQ=60)

                                            GCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                    <  SRR4302537.2856990/94‑1 (MQ=60)

                                            GCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCAT                                                    >  SRR4302537.3691872/1‑94 (MQ=60)

                                            GCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCCGTTGCTGTACCGGGGACGGATTTAATTTCCCTTCAT                                                    >  SRR4302537.5532379/1‑94 (MQ=60)

                                             CTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCCGGAACGTATTTAATTCCCCTGCATC                                                   >  SRR4302537.1916604/1‑94 (MQ=60)

                                              TGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                  >  SRR4302537.5768013/1‑94 (MQ=60)

                                              TGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCG                                                  <  SRR4302537.6430706/94‑1 (MQ=60)

                                              TGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCCGTTGCTTTACCGTGGACGTATTTAATTCCCCTGCGTCG                                                  >  SRR4302537.5741164/1‑94 (MQ=60)

                                               GTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGC                                                 >  SRR4302537.4016007/1‑94 (MQ=60)

                                                 TTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCC                                               <  SRR4302537.873766/94‑1 (MQ=60)

                                                 TTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCC                                               >  SRR4302537.565336/1‑94 (MQ=60)

                                                 TTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCcctttccgggttctgttccgggggcgggttttattccccttctttcccc                                              >  SRR4302537.4486376/1‑45 (MQ=60)

                                                  TGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCG                                              >  SRR4302537.2962646/1‑94 (MQ=60)

                                                   GTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGC                                             >  SRR4302537.793460/1‑94 (MQ=60)

                                                    TGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCA                                            >  SRR4302537.6419323/1‑94 (MQ=60)

                                                    TGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCA                                            >  SRR4302537.207878/1‑94 (MQ=60)

                                                      GTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTGCCGGTCGCTGTACCGGGcagctatttcattcccctccatgcgctccatc                                          >  SRR4302537.1455652/1‑62 (MQ=60)

                                                      GTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATT                                          <  SRR4302537.3514958/94‑1 (MQ=60)

                                                       TGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTC                                         >  SRR4302537.6156437/1‑94 (MQ=60)

                                                       TGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTC                                         <  SRR4302537.1209544/94‑1 (MQ=60)

                                                        GATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                        >  SRR4302537.3963908/1‑94 (MQ=60)

                                                        GATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCT                                        <  SRR4302537.2310852/94‑1 (MQ=60)

                                                          TT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTG                                      >  SRR4302537.915305/1‑94 (MQ=60)

                                                          AT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTG                                      <  SRR4302537.752308/94‑1 (MQ=60)

                                                                   AAATACTGTACCGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCT                              <  SRR4302537.6060969/94‑1 (MQ=60)

                                                                   AAATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCT                              >  SRR4302537.4637022/1‑94 (MQ=60)

                                                                     ATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTC                            >  SRR4302537.5901605/1‑94 (MQ=60)

                                                                     ATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTC                            >  SRR4302537.3696174/1‑94 (MQ=60)

                                                                     ATACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTACCCTGCATCGCCCGCATTCTTGCCGCATCTTC                            >  SRR4302537.2952274/1‑94 (MQ=60)

                                                                      TACTGTAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCC                           >  SRR4302537.6230510/1‑94 (MQ=60)

                                                                           TAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTTCCCCGG                      >  SRR4302537.2391177/1‑94 (MQ=60)

                                                                           TAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGG                      >  SRR4302537.4279047/1‑94 (MQ=60)

                                                                           TAACGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGG                      >  SRR4302537.1381868/1‑94 (MQ=60)

                                                                              CGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGT                   >  SRR4302537.3596531/1‑94 (MQ=60)

                                                                              CGCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCCGCGT                   >  SRR4302537.4864895/1‑94 (MQ=60)

                                                                               GCCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTC                  >  SRR4302537.3377302/1‑94 (MQ=60)

                                                                                CCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCA                 >  SRR4302537.5403387/1‑94 (MQ=60)

                                                                                CCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCA                 >  SRR4302537.6253561/1‑94 (MQ=60)

                                                                                CCTGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCA                 <  SRR4302537.105694/94‑1 (MQ=60)

                                                                                  TGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACA               >  SRR4302537.4260197/1‑94 (MQ=60)

                                                                                  TGACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACA               >  SRR4302537.2165280/1‑94 (MQ=60)

                                                                                    ACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC             <  SRR4302537.4700379/94‑1 (MQ=60)

                                                                                    ACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC             <  SRR4302537.2148090/94‑1 (MQ=60)

                                                                                    ACGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACC             >  SRR4302537.6295153/1‑94 (MQ=60)

                                                                                     CGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCG            <  SRR4302537.5473648/94‑1 (MQ=60)

                                                                                     CGAT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCG            <  SRR4302537.6444999/94‑1 (MQ=60)

                                                                                       AT‑TTTCCCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAA          >  SRR4302537.1475930/1‑94 (MQ=60)

                                                                                        T‑TTTCCCCGTTCCCGGTTGCTGTACAGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAG         >  SRR4302537.371179/1‑94 (MQ=60)

                                                                                          TTC‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTA       <  SRR4302537.3527698/94‑1 (MQ=60)

                                                                                          TTC‑CCCGTTCCCGGGTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTA       <  SRR4302537.345328/94‑1 (MQ=60)

                                                                                           TC‑CCCGTTCCCGGTTGCTGTACCGGGAGCGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAA      <  SRR4302537.2531718/94‑1 (MQ=60)

                                                                                           TC‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAA      <  SRR4302537.6514384/94‑1 (MQ=60)

                                                                                            C‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC     >  SRR4302537.5321119/1‑94 (MQ=60)

                                                                                            C‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAC     <  SRR4302537.1385054/94‑1 (MQ=60)

                                                                                            C‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCCACCGCATTCTTACCGCATCTTCCCCCCGCGTCACACCGAAagaaa     >  SRR4302537.2497924/1‑89 (MQ=60)

                                                                                              CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACG    >  SRR4302537.2830432/1‑94 (MQ=60)

                                                                                              CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACG    <  SRR4302537.5954821/94‑1 (MQ=60)

                                                                                              CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACG    <  SRR4302537.4265534/94‑1 (MQ=60)

                                                                                                CGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTT  <  SRR4302537.5557543/94‑1 (MQ=60)

ATGATCCTGCCAATTGCCTTGTTAACCGCTGGCTTGTTAGGCACGCTGTTTGTGGTGATT‑AAAAAAAAATACTGTAACGCCTGACGAT‑TTT‑CCCGTTCCCGGTTGCTGTACCGGGAACGTATTTAATTCCCCTGCATCGCCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTT  >  NC_000913/3152154‑3152340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`