Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,345,920 |
(C)6→7 |
intergenic (+41/‑173) |
ptsO → / → yrbL |
phosphocarrier protein HPr‑like NPr/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,345,914 | 1 | . | C | 95.0%
| 782.2
/ 30.4
| 239 | intergenic (+35/‑179) | ptsO/yrbL | phosphocarrier protein HPr‑like NPr/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (7/5); new base C (117/110); total (124/115) |
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.47e-01 |
Only 100 of 263 total aligned reads displayed.
AGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTA > NC_000913/3345822‑3346006
|
gaggaagCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑c < 1:613871/93‑1 (MQ=255)
agCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑cccccc < 1:5159968/93‑1 (MQ=255)
aCTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑cccccccga > 1:5207516/1‑90 (MQ=255)
ggCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACaa < 2:3265376/93‑1 (MQ=255)
ggCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACaa > 1:6013508/1‑93 (MQ=255)
gccgccGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAAt < 1:531729/93‑1 (MQ=255)
ccgccgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑CCCCCCGACAATaa < 2:4904595/93‑1 (MQ=255)
cgccgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑CCCCCCGACAATAAg > 2:3764817/1‑93 (MQ=255)
gccgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAg > 1:3790689/1‑93 (MQ=255)
cgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGaa > 1:4889455/1‑93 (MQ=255)
ttATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGaaaa > 2:1375501/1‑93 (MQ=255)
ttATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGaaaa > 2:3406504/1‑93 (MQ=255)
aTCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATc > 2:5997626/1‑93 (MQ=255)
aTCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATc < 1:3979433/93‑1 (MQ=255)
aTCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACCCCCTTCAAGCTCCCCCCCGACAATAAGAAAATc < 1:151542/93‑1 (MQ=255)
tCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCa > 2:3201819/1‑93 (MQ=255)
cGCCCTCTTTAATTCTGGTTGTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCAc < 2:2890663/93‑1 (MQ=255)
cccTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGt < 1:4427138/93‑1 (MQ=255)
ctctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTAc > 2:3992129/1‑93 (MQ=255)
ctctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTAc > 1:4929772/1‑93 (MQ=255)
ctctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTAc > 2:1169523/1‑93 (MQ=255)
tctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACt < 1:3031053/93‑1 (MQ=255)
tctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACt > 2:264964/1‑93 (MQ=255)
tctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTg > 2:1511422/1‑93 (MQ=255)
ctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTg > 2:2101478/1‑93 (MQ=255)
tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGa < 2:5463315/93‑1 (MQ=255)
tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGa > 2:278270/1‑93 (MQ=255)
tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGa > 2:3975583/1‑93 (MQ=255)
tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGa < 1:2567394/93‑1 (MQ=255)
tAATTCTGATTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGaaa > 2:6309735/1‑93 (MQ=255)
aaTTCTGTTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAAt < 2:3588093/93‑1 (MQ=255)
aTTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATc < 1:1373159/93‑1 (MQ=255)
aTTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATc < 2:843160/93‑1 (MQ=255)
ttCTGGTTTTGATGAAGATTTATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCg < 1:1761016/93‑1 (MQ=255)
ttCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCg > 2:2725795/1‑93 (MQ=255)
ttCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCg > 1:2361387/1‑93 (MQ=255)
cTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGtt < 1:991705/93‑1 (MQ=255)
tGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTtc > 2:521323/1‑93 (MQ=255)
tGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTtc > 1:5869032/1‑93 (MQ=255)
ttttGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtca > 2:4355126/1‑93 (MQ=255)
tttGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaa < 1:6271091/93‑1 (MQ=255)
ttGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaat > 1:455439/1‑93 (MQ=255)
ttGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaat < 2:5674513/93‑1 (MQ=255)
tgatgaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaatc < 2:6118989/93‑1 (MQ=255)
gatgaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaatca > 2:6373979/1‑93 (MQ=255)
gatgaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaatca < 1:705013/93‑1 (MQ=255)
gatgaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCtcaatca > 1:1054482/1‑93 (MQ=255)
tgaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAAc > 1:2981091/1‑93 (MQ=255)
gaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACg > 2:1632109/1‑93 (MQ=255)
gaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACg < 2:5488070/93‑1 (MQ=255)
gaAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCATTCTCAATCAACg > 1:3687955/1‑93 (MQ=255)
gATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCa > 1:5742822/1‑93 (MQ=255)
aTTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAt > 2:6145214/1‑93 (MQ=255)
aTTAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAt < 1:6085865/93‑1 (MQ=255)
ttAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAtt > 1:4979203/1‑93 (MQ=255)
tactCTTCATCACTTTGACATACAACTCCCTTCAATCTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAttt < 2:5120016/90‑1 (MQ=255)
tAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAttt > 2:143262/1‑93 (MQ=255)
tAATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAttt < 2:2985180/93‑1 (MQ=255)
tAATCTTCATCACTTTGACATACAACGCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAttt < 1:1893167/93‑1 (MQ=255)
aaTCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTg < 1:2205661/93‑1 (MQ=255)
aTCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGt < 2:455439/93‑1 (MQ=255)
aTCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGt > 2:2877941/1‑93 (MQ=255)
cTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTAc > 2:4203031/1‑93 (MQ=255)
ttCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACa < 1:824759/93‑1 (MQ=255)
ttCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACa < 1:4205541/93‑1 (MQ=255)
tcatcaCTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAt < 1:4855393/93‑1 (MQ=255)
catcaCTTTGACATACAACTCCCTTCAACCTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAtt < 2:5147607/93‑1 (MQ=255)
atcaCTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAttt < 1:5626058/93‑1 (MQ=255)
tcaCTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAtttt > 1:1865330/1‑93 (MQ=255)
caCTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTtg > 2:5308863/1‑93 (MQ=255)
cTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCCTTTGAACATTTtgcg > 2:1227068/1‑91 (MQ=255)
cTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTtgtg < 1:1075288/93‑1 (MQ=255)
cTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTtgtg > 1:1322829/1‑93 (MQ=255)
cTTTGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTtgtg > 1:2265147/1‑93 (MQ=255)
tttGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTgc > 1:2682150/1‑93 (MQ=255)
ttGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTgcg > 1:478702/1‑93 (MQ=255)
tGACATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTgcgc < 1:4257281/93‑1 (MQ=255)
aCATACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCtt < 2:5903894/93‑1 (MQ=255)
aTACAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCtttt > 2:5544527/1‑93 (MQ=255)
aCAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCa > 1:1793382/1‑93 (MQ=255)
cAACTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCAc < 2:5874842/93‑1 (MQ=255)
cAACTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACt < 2:2247509/93‑1 (MQ=255)
aaCTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACt < 2:502099/93‑1 (MQ=255)
aaCTCCCTCCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACt < 2:2592957/93‑1 (MQ=255)
aCTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCGCtt < 2:3070202/93‑1 (MQ=255)
aCTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACtt < 1:3342280/93‑1 (MQ=255)
aCTCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACtt > 1:1743787/1‑93 (MQ=255)
cTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTc < 1:1696613/93‑1 (MQ=255)
cTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTc < 1:165164/93‑1 (MQ=255)
tCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTc > 1:3553564/1‑93 (MQ=255)
tCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTc > 1:6303359/1‑93 (MQ=255)
tCCCTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTc < 2:3889159/93‑1 (MQ=255)
ccTTCAACCTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCag < 2:1259178/93‑1 (MQ=255)
ccTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCag > 2:3637209/1‑93 (MQ=255)
cTTCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCaga < 2:3110001/93‑1 (MQ=255)
ttCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaa < 2:1822346/93‑1 (MQ=255)
ttCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaa > 1:2063911/1‑93 (MQ=255)
ttCAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaa > 2:2370081/1‑93 (MQ=255)
cAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaaga < 2:5640084/93‑1 (MQ=255)
cAAACTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaaga < 2:656424/93‑1 (MQ=255)
|
AGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTA > NC_000913/3345822‑3346006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC > NC_000913/3345827‑3346013
|
AAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCC > SRR4302537.2137052/1‑94 (MQ=60)
AGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCC < SRR4302537.5195548/94‑1 (MQ=60)
CCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCcg < SRR4302537.3575197/94‑3 (MQ=60)
CACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCcga > SRR4302537.5243332/1‑91 (MQ=60)
ACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGAC > SRR4302537.5246339/1‑94 (MQ=60)
ACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGAC > SRR4302537.1470126/1‑94 (MQ=60)
ACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGAC > SRR4302537.2371066/1‑94 (MQ=60)
ACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGAC > SRR4302537.5763190/1‑94 (MQ=60)
ACTGGCCGCCGTTACCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCATTCAAA‑CTCCCCCCCGAC > SRR4302537.5193379/1‑94 (MQ=60)
CTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACA > SRR4302537.4012357/1‑94 (MQ=60)
TGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAA < SRR4302537.6491844/94‑1 (MQ=60)
TGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAA > SRR4302537.6054824/1‑94 (MQ=60)
GGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAAT < SRR4302537.970082/94‑1 (MQ=60)
GCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATA < SRR4302537.535378/94‑1 (MQ=60)
CCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAA < SRR4302537.2571470/94‑1 (MQ=60)
CGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAG > SRR4302537.3817294/1‑94 (MQ=60)
CGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAG > SRR4302537.4551134/1‑94 (MQ=60)
CGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAG < SRR4302537.4327232/94‑1 (MQ=60)
CCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAA > SRR4302537.4923221/1‑94 (MQ=60)
CGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAA > SRR4302537.162233/1‑94 (MQ=60)
CGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAA < SRR4302537.5370753/94‑1 (MQ=60)
GTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAA > SRR4302537.5926391/1‑94 (MQ=60)
GTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAA > SRR4302537.3016383/1‑94 (MQ=60)
ATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCA > SRR4302537.554344/1‑94 (MQ=60)
ATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCA < SRR4302537.4007288/94‑1 (MQ=60)
ATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACCCCCTTCAAG‑CTCCCCCCCGACAATAAGAAAATCA < SRR4302537.152624/94‑1 (MQ=60)
TCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCAC > SRR4302537.1905249/1‑94 (MQ=60)
CGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACG > SRR4302537.466769/1‑94 (MQ=60)
GCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGT > SRR4302537.6108559/1‑94 (MQ=60)
CCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTA < SRR4302537.4457715/94‑1 (MQ=60)
CCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTAC > SRR4302537.4963754/1‑94 (MQ=60)
CTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACT < SRR4302537.4974868/94‑1 (MQ=60)
CTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACT > SRR4302537.2663886/1‑94 (MQ=60)
CTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACT > SRR4302537.3823874/1‑94 (MQ=60)
TCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTG < SRR4302537.3052187/94‑1 (MQ=60)
CTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGA > SRR4302537.4954395/1‑94 (MQ=60)
CTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGA > SRR4302537.46894/1‑94 (MQ=60)
TTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAA < SRR4302537.2585383/94‑1 (MQ=60)
TTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAA > SRR4302537.367988/1‑94 (MQ=60)
TAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAAT < SRR4302537.371925/94‑1 (MQ=60)
AATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATC < SRR4302537.1365257/94‑1 (MQ=60)
ATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCG < SRR4302537.1382748/94‑1 (MQ=60)
ATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCG > SRR4302537.2378044/1‑94 (MQ=60)
TTCTGGTTTTGATGAAGATTTATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGT < SRR4302537.1773291/94‑1 (MQ=60)
TCTGTTTTTGATGAAGAGTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTT < SRR4302537.1734253/94‑1 (MQ=60)
TCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTT < SRR4302537.1734444/94‑1 (MQ=60)
TCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTT < SRR4302537.4913546/94‑1 (MQ=60)
TCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTT < SRR4302537.5205729/94‑1 (MQ=60)
CTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACCC‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC < SRR4302537.6176407/94‑1 (MQ=60)
CTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC < SRR4302537.4240204/94‑1 (MQ=60)
CTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC < SRR4302537.998554/94‑1 (MQ=60)
CTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC > SRR4302537.5909293/1‑94 (MQ=60)
GTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCA > SRR4302537.6317062/1‑94 (MQ=60)
GTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCA > SRR4302537.3716802/1‑94 (MQ=60)
TTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAA > SRR4302537.4244214/1‑94 (MQ=60)
TTTTGATGAAGATTAACCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAA < SRR4302537.2224599/94‑1 (MQ=60)
TTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAAT > SRR4302537.1623940/1‑94 (MQ=60)
TTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAAT > SRR4302537.458584/1‑94 (MQ=60)
TTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAAT < SRR4302537.6314130/94‑1 (MQ=60)
TTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATC < SRR4302537.2998219/94‑1 (MQ=60)
TTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATC > SRR4302537.1835661/1‑94 (MQ=60)
TTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATC < SRR4302537.4930352/94‑1 (MQ=60)
TGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCTACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCA < SRR4302537.4845155/94‑1 (MQ=60)
TGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCA > SRR4302537.1061758/1‑94 (MQ=60)
TGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCA > SRR4302537.2459647/1‑94 (MQ=60)
GATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAA > SRR4302537.1788063/1‑94 (MQ=60)
GATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAA < SRR4302537.709835/94‑1 (MQ=60)
ATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAAC > SRR4302537.3001941/1‑94 (MQ=60)
ATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAAC < SRR4302537.5833302/94‑1 (MQ=60)
TGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACG > SRR4302537.6155859/1‑94 (MQ=60)
TGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCATTCTCAATCAACG > SRR4302537.3713893/1‑94 (MQ=60)
AGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCA > SRR4302537.5206836/1‑94 (MQ=60)
AGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCA > SRR4302537.5782142/1‑94 (MQ=60)
GATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAT < SRR4302537.1767374/94‑1 (MQ=60)
GATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAT < SRR4302537.5924889/94‑1 (MQ=60)
ATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATT > SRR4302537.1065995/1‑94 (MQ=60)
ATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATT < SRR4302537.6127674/94‑1 (MQ=60)
ATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATT > SRR4302537.5013521/1‑94 (MQ=60)
TTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTT < SRR4302537.5071619/94‑1 (MQ=60)
TAATCTTCATCACTTTGACATACAACGCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTG < SRR4302537.1906323/94‑1 (MQ=60)
AATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGT < SRR4302537.2221215/94‑1 (MQ=60)
AATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGT < SRR4302537.1823232/94‑1 (MQ=60)
TCTTCATCACTTTGACATACACCTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTAC < SRR4302537.2030831/94‑1 (MQ=60)
CTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACA > SRR4302537.2933198/1‑94 (MQ=60)
CTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTNCTCAATCAACGTCATNTGTNCA > SRR4302537.1434810/1‑94 (MQ=60)
TTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAT < SRR4302537.3542864/94‑1 (MQ=60)
TTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAT < SRR4302537.4234891/94‑1 (MQ=60)
TTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAT < SRR4302537.830414/94‑1 (MQ=60)
TTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAAACAACGTCATTTGTACAT < SRR4302537.2208749/94‑1 (MQ=60)
TCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATT < SRR4302537.4888896/94‑1 (MQ=60)
CATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTT < SRR4302537.6252098/94‑1 (MQ=60)
CATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTT < SRR4302537.1767424/94‑1 (MQ=60)
ATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTT > SRR4302537.1878320/1‑94 (MQ=60)
ATCACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTT < SRR4302537.5664531/94‑1 (MQ=60)
CACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGT < SRR4302537.813604/94‑1 (MQ=60)
ACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTG > SRR4302537.2281141/1‑94 (MQ=60)
ACTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTG > SRR4302537.1332051/1‑94 (MQ=60)
CTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGC < SRR4302537.1082696/94‑1 (MQ=60)
CTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGC > SRR4302537.1253610/1‑94 (MQ=60)
CTTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGC > SRR4302537.2700876/1‑94 (MQ=60)
TTTGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCG > SRR4302537.481978/1‑94 (MQ=60)
TGACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCT < SRR4302537.4286869/94‑1 (MQ=60)
GACATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTT < SRR4302537.6416650/94‑1 (MQ=60)
CATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTT > SRR4302537.6404847/1‑94 (MQ=60)
CATACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTT > SRR4302537.887065/1‑94 (MQ=60)
ATACAACTCCCTTCAAA‑CTCCCCCCCGACAATCAGAAAATCACGTACTGACATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTC > SRR4302537.6237376/1‑94 (MQ=60)
TACAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCA > SRR4302537.1805896/1‑94 (MQ=60)
ACACCTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCAC < SRR4302537.4321374/94‑1 (MQ=60)
CAACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACT < SRR4302537.3294828/94‑1 (MQ=60)
AACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTT > SRR4302537.1755944/1‑94 (MQ=60)
AACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTT > SRR4302537.2337826/1‑94 (MQ=60)
AACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTT > SRR4302537.2075153/1‑94 (MQ=60)
ACTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTT < SRR4302537.3365944/94‑1 (MQ=60)
CTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTC > SRR4302537.6346525/1‑94 (MQ=60)
CTCCCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTC > SRR4302537.3578652/1‑94 (MQ=60)
CTCCCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCA < SRR4302537.166340/94‑1 (MQ=60)
CTCCCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCA < SRR4302537.1708481/94‑1 (MQ=60)
cccgtgcatctcCCCCCCGACAAGAAGAAACTGACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAG < SRR4302537.563949/82‑1 (MQ=60)
CCTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGA > SRR4302537.167428/1‑94 (MQ=60)
CCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAA < SRR4302537.4906883/94‑1 (MQ=60)
CTTCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAA > SRR4302537.2078403/1‑94 (MQ=60)
TCAAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGA < SRR4302537.5895623/94‑1 (MQ=60)
AAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAAC < SRR4302537.3310555/94‑1 (MQ=60)
AAA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAAC < SRR4302537.3932195/94‑1 (MQ=60)
AA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACC < SRR4302537.5359729/94‑1 (MQ=60)
AA‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACC < SRR4302537.5615405/94‑1 (MQ=60)
A‑CTCCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCT > SRR4302537.4430495/1‑94 (MQ=60)
TT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTA > SRR4302537.412938/1‑94 (MQ=60)
tcCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTA > SRR4302537.1254001/3‑94 (MQ=60)
C‑CCCCCCGACAATAAGAAAATCACGTACTGAATTCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAA < SRR4302537.2581463/94‑1 (MQ=60)
C‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAA > SRR4302537.6301497/1‑94 (MQ=60)
CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAG < SRR4302537.103094/94‑1 (MQ=60)
CCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGA > SRR4302537.1402450/1‑94 (MQ=60)
CCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGA > SRR4302537.1561570/1‑94 (MQ=60)
CCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAA > SRR4302537.607956/1‑94 (MQ=60)
CCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAA < SRR4302537.5431340/94‑1 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC < SRR4302537.3258347/94‑1 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC > SRR4302537.6317690/1‑94 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC > SRR4302537.2996351/1‑94 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC < SRR4302537.2781283/94‑1 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC < SRR4302537.2975494/94‑1 (MQ=60)
CGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTCCACTTTCAGAAGAACCTTAAGAAAAC < SRR4302537.1744300/94‑1 (MQ=60)
|
AAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAAC > NC_000913/3345827‑3346013
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
