Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,548	1 bp→GG	intergenic (‑117/‑744)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,547	1	.	G	96.7%	712.2 / 15.1	211	intergenic (‑116/‑745)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (4/3); new base G (93/111); total (97/114)
Fisher's exact test for biased strand distribution p-value = 7.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.33e-01
*	NC_000913	3,957,548	0	T	G	99.5%	735.2 / ‑5.8	213	intergenic (‑117/‑744)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (97/115); minor base C (0/1); total (97/116)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 222 total aligned reads displayed.

GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑T‑G‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG  >  NC_000913/3957472‑3957626

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 cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctc                                                                 >  1:6019089/1‑90 (MQ=255)

  aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctca                                                                >  2:5585913/1‑89 (MQ=255)

  aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctca                                                                >  1:4747401/1‑89 (MQ=255)

     aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgg                                                              >  2:2738027/1‑93 (MQ=255)

      tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAACGC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAggg                                                             <  1:1658145/93‑1 (MQ=255)

      tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAggg                                                             >  2:2315848/1‑93 (MQ=255)

      tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAACCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgtg                                                             >  2:4740162/1‑91 (MQ=255)

       ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgggg                                                            <  2:2797845/93‑1 (MQ=255)

        cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGga                                                           <  2:2353149/93‑1 (MQ=255)

        cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGga                                                           <  1:3215036/93‑1 (MQ=255)

         gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGgag                                                          >  1:5203087/1‑93 (MQ=255)

           aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGaa                                                        >  1:112220/1‑93 (MQ=255)

            gATGCTAAAGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGGAAAAGGCCGGCAAATC‑CGGG‑G‑T‑TCGCAGGTT‑CCTCAAGGGGAGaaa                                                       >  2:6273166/1‑93 (MQ=255)

             aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGaaaa                                                      <  1:5299839/93‑1 (MQ=255)

             aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCCCAAGGGGAGaaaa                                                      >  2:5216315/1‑93 (MQ=255)

              tGCTAGCGTAATGGTAGGTCGGGGAGGGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc                                                     <  2:3460097/93‑1 (MQ=255)

              tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc                                                     >  1:5877130/1‑93 (MQ=255)

               gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt                                                    >  2:4437960/1‑93 (MQ=255)

                 tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa                                                  <  1:3239004/93‑1 (MQ=255)

                 tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAATTa                                                  >  2:2657323/1‑93 (MQ=255)

                  aaCGTAATTGTCAGTCAGGGATTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg                                                 <  2:1297986/93‑1 (MQ=255)

                  aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg                                                 <  2:956673/93‑1 (MQ=255)

                  aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg                                                 <  2:5765088/93‑1 (MQ=255)

                   aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGAAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg                                                <  2:1453849/93‑1 (MQ=255)

                    cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg                                               <  1:4403237/93‑1 (MQ=255)

                    cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg                                               >  1:4519894/1‑93 (MQ=255)

                     gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGc                                              >  2:3160099/1‑93 (MQ=255)

                     gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGc                                              >  1:4875293/1‑93 (MQ=255)

                      tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc                                             <  2:4953663/93‑1 (MQ=255)

                      tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc                                             <  1:2038193/93‑1 (MQ=255)

                      tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc                                             <  2:4086477/93‑1 (MQ=255)

                       aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCct                                            <  1:2944315/93‑1 (MQ=255)

                        aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc                                           >  1:4666477/1‑93 (MQ=255)

                        aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc                                           <  2:876420/93‑1 (MQ=255)

                          tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                         >  1:2437425/1‑93 (MQ=255)

                          tGTCAGGCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                         <  2:6194495/93‑1 (MQ=255)

                           gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                        <  2:862870/93‑1 (MQ=255)

                           gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAAC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                        >  2:2262569/1‑93 (MQ=255)

                             cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                      <  2:2969211/93‑1 (MQ=255)

                               gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                    <  1:343147/93‑1 (MQ=255)

                               gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                    >  2:1568028/1‑93 (MQ=255)

                                tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                   >  2:5003561/1‑93 (MQ=255)

                                 cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                  >  1:192349/1‑93 (MQ=255)

                                 cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                  <  2:387645/93‑1 (MQ=255)

                                  agGGAGTGGGTGGTTCATATATGGCAAAAGCGCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                 <  1:3033522/93‑1 (MQ=255)

                                  agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                 >  1:2921155/1‑93 (MQ=255)

                                   gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                <  1:5499640/93‑1 (MQ=255)

                                   gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                >  2:1168780/1‑93 (MQ=255)

                                     gAGTGGCTGTTACATATATGGCAAAAGCCCGGAAAGTC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              <  1:1479384/93‑1 (MQ=255)

                                     gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              <  2:1706788/93‑1 (MQ=255)

                                       gTGGCTGGNACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                            <  2:3774868/93‑1 (MQ=255)

                                        tGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                           <  1:2001501/93‑1 (MQ=255)

                                          gCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCCGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                         >  2:220037/1‑93 (MQ=255)

                                          gCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                         <  1:6040356/93‑1 (MQ=255)

                                           cTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                        <  1:2290757/93‑1 (MQ=255)

                                            tGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                       >  2:3046603/1‑93 (MQ=255)

                                            tGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                       <  1:6400673/93‑1 (MQ=255)

                                             gttACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  1:2314512/91‑1 (MQ=255)

                                             ggTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  2:3802233/93‑1 (MQ=255)

                                             ggTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  2:3944041/93‑1 (MQ=255)

                                             ggTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      >  1:1289646/1‑93 (MQ=255)

                                             ggTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      >  1:1829892/1‑93 (MQ=255)

                                              gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  2:2492102/93‑1 (MQ=255)

                                              gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  2:6436644/93‑1 (MQ=255)

                                              gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  1:336380/93‑1 (MQ=255)

                                              gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  2:4659484/93‑1 (MQ=255)

                                                aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                   <  2:1955124/93‑1 (MQ=255)

                                                aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                   >  1:2634512/1‑93 (MQ=255)

                                                aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                   <  1:3588988/93‑1 (MQ=255)

                                                 cATATATGGCAAAAGCCGGGAAAATC‑C‑‑G‑GTCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  <  1:4597768/93‑1 (MQ=255)

                                                 cATATATGGCAAAAGCCCGGAAAGTC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  <  2:1216095/93‑1 (MQ=255)

                                                 cATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  >  1:142204/1‑93 (MQ=255)

                                                 cATATATGGCAAAAGCCCGAAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  <  1:453113/93‑1 (MQ=255)

                                                   tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  2:4363847/1‑93 (MQ=255)

                                                   tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  2:4544855/1‑93 (MQ=255)

                                                   tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  2:5639456/1‑93 (MQ=255)

                                                    atatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt               <  2:3207476/93‑1 (MQ=255)

                                                     tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg              >  1:1795823/1‑93 (MQ=255)

                                                     tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg              >  2:3988259/1‑93 (MQ=255)

                                                     tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg              <  2:3104424/93‑1 (MQ=255)

                                                     tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg              >  2:5524314/1‑93 (MQ=255)

                                                     tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg              <  1:785196/93‑1 (MQ=255)

                                                       tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            >  1:3474080/1‑93 (MQ=255)

                                                       tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            >  2:1419565/1‑93 (MQ=255)

                                                       tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            <  2:4825143/93‑1 (MQ=255)

                                                       tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            <  1:6091453/93‑1 (MQ=255)

                                                        ggCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt           <  2:5174935/93‑1 (MQ=255)

                                                         gCAAAAGCCCGGAAAATCAG‑‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta          <  2:4160461/93‑1 (MQ=255)

                                                         gCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta          <  1:3850234/93‑1 (MQ=255)

                                                          cAAAATCCCGGAAAATC‑C‑‑G‑GTCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat         <  1:6219775/93‑1 (MQ=255)

                                                          cAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat         >  1:2756471/1‑93 (MQ=255)

                                                          cAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat         <  2:713947/93‑1 (MQ=255)

                                                            aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt       >  2:4846421/1‑93 (MQ=255)

                                                            aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt       <  1:3197903/93‑1 (MQ=255)

                                                            aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt       >  1:1751886/1‑93 (MQ=255)

                                                               gCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat    >  2:5441257/1‑93 (MQ=255)

                                                                cccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt   >  1:271174/1‑93 (MQ=255)

                                                                cccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt   <  1:4061400/93‑1 (MQ=255)

                                                                cccGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt   >  2:3589994/1‑93 (MQ=255)

                                                                 ccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg  >  1:3515354/1‑93 (MQ=255)

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GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑T‑G‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG  >  NC_000913/3957472‑3957626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A