Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 99.5%
| 753.9
/ ‑5.3
| 214 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base T (96/116); minor base C (0/1); total (96/118) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
Only 100 of 222 total aligned reads displayed.
GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑T‑G‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957472‑3957626
|
cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctc > 1:6019089/1‑90 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctca > 2:5585913/1‑89 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑T‑ccctca > 1:4747401/1‑89 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgg > 2:2738027/1‑93 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAACGC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAggg < 1:1658145/93‑1 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAggg > 2:2315848/1‑93 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAACCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgtg > 2:4740162/1‑91 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAgggg < 2:2797845/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGga < 2:2353149/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGga < 1:3215036/93‑1 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGgag > 1:5203087/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGaa > 1:112220/1‑93 (MQ=255)
gATGCTAAAGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGGAAAAGGCCGGCAAATC‑CGGG‑G‑T‑TCGCAGGTT‑CCTCAAGGGGAGaaa > 2:6273166/1‑93 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGaaaa < 1:5299839/93‑1 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCCCAAGGGGAGaaaa > 2:5216315/1‑93 (MQ=255)
tGCTAGCGTAATGGTAGGTCGGGGAGGGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc < 2:3460097/93‑1 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc > 1:5877130/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 2:4437960/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 1:3239004/93‑1 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAATTa > 2:2657323/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGATTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg < 2:1297986/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg < 2:956673/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg < 2:5765088/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGAAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:1453849/93‑1 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg < 1:4403237/93‑1 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg > 1:4519894/1‑93 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGc > 2:3160099/1‑93 (MQ=255)
gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGc > 1:4875293/1‑93 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 2:4953663/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 1:2038193/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 2:4086477/93‑1 (MQ=255)
aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCct < 1:2944315/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc > 1:4666477/1‑93 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:876420/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa > 1:2437425/1‑93 (MQ=255)
tGTCAGGCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:6194495/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:862870/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAAC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt > 2:2262569/1‑93 (MQ=255)
cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:2969211/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:343147/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:1568028/1‑93 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 2:5003561/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa > 1:192349/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:387645/93‑1 (MQ=255)
agGGAGTGGGTGGTTCATATATGGCAAAAGCGCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 1:3033522/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:2921155/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa < 1:5499640/93‑1 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:1168780/1‑93 (MQ=255)
gAGTGGCTGTTACATATATGGCAAAAGCCCGGAAAGTC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:1479384/93‑1 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:1706788/93‑1 (MQ=255)
gTGGCTGGNACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 2:3774868/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:2001501/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCCGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt > 2:220037/1‑93 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 1:6040356/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:2290757/93‑1 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 2:3046603/1‑93 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 1:6400673/93‑1 (MQ=255)
gttACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:2314512/91‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:3802233/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:3944041/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 1:1289646/1‑93 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 1:1829892/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:2492102/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:6436644/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:336380/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:4659484/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:1955124/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 1:2634512/1‑93 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:3588988/93‑1 (MQ=255)
cATATATGGCAAAAGCCGGGAAAATC‑C‑‑G‑GTCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:4597768/93‑1 (MQ=255)
cATATATGGCAAAAGCCCGGAAAGTC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 2:1216095/93‑1 (MQ=255)
cATATATGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 1:142204/1‑93 (MQ=255)
cATATATGGCAAAAGCCCGAAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:453113/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:4363847/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:4544855/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:5639456/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:3207476/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 1:1795823/1‑93 (MQ=255)
tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:3988259/1‑93 (MQ=255)
tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:3104424/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:5524314/1‑93 (MQ=255)
tatGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:785196/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3474080/1‑93 (MQ=255)
tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:1419565/1‑93 (MQ=255)
tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:4825143/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:6091453/93‑1 (MQ=255)
ggCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:5174935/93‑1 (MQ=255)
gCAAAAGCCCGGAAAATCAG‑‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 2:4160461/93‑1 (MQ=255)
gCAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:3850234/93‑1 (MQ=255)
cAAAATCCCGGAAAATC‑C‑‑G‑GTCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 1:6219775/93‑1 (MQ=255)
cAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 1:2756471/1‑93 (MQ=255)
cAAAAGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 2:713947/93‑1 (MQ=255)
aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 2:4846421/1‑93 (MQ=255)
aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 1:3197903/93‑1 (MQ=255)
aaaGCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:1751886/1‑93 (MQ=255)
gCCCGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:5441257/1‑93 (MQ=255)
cccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt > 1:271174/1‑93 (MQ=255)
cccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:4061400/93‑1 (MQ=255)
cccGGAAAATC‑C‑‑GGG‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt > 2:3589994/1‑93 (MQ=255)
ccGGAAAATC‑CG‑G‑G‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3515354/1‑93 (MQ=255)
|
GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑‑T‑G‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957472‑3957626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑C‑‑‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA > NC_000913/3957480‑3957643
|
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAG > SRR4302537.5238879/1‑94 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAG < SRR4302537.3237663/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAA > SRR4302537.113041/1‑94 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAA < SRR4302537.4530409/94‑1 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAA > SRR4302537.1562/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAA > SRR4302537.3596700/1‑94 (MQ=60)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAAT > SRR4302537.3303848/1‑94 (MQ=60)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAAC > SRR4302537.5917454/1‑94 (MQ=60)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAAC < SRR4302537.5336240/94‑1 (MQ=60)
ATGCTAACGTAATTGTCAGTCAGGGAATGGCTGGTAAATATATGGCAAAAACCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAAC < SRR4302537.6517435/94‑1 (MQ=57)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATTTTTGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACT > SRR4302537.3517105/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTA > SRR4302537.1175294/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTA > SRR4302537.3249558/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTA > SRR4302537.4897137/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAG < SRR4302537.2002019/94‑1 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAG < SRR4302537.4008946/94‑1 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAG < SRR4302537.3261838/94‑1 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAG < SRR4302537.3220719/94‑1 (MQ=60)
AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGG < SRR4302537.3090552/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGG > SRR4302537.4551158/1‑94 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGG < SRR4302537.1451172/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGC > SRR4302537.4908945/1‑94 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGC < SRR4302537.4433622/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGC > SRR4302537.4402195/1‑94 (MQ=60)
GTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCC > SRR4302537.1827304/1‑94 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCT < SRR4302537.2052406/94‑1 (MQ=60)
AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTC > SRR4302537.6093385/1‑94 (MQ=60)
AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTC > SRR4302537.4698762/1‑94 (MQ=60)
AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTC < SRR4302537.2964981/94‑1 (MQ=60)
TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTA > SRR4302537.2454596/1‑94 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCCAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TAGCAGGCC‑CCTCAAGGGGAGAAAACTTAGGGCCCCTATG > SRR4302537.5203691/1‑94 (MQ=46)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑‑G‑‑CGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG < SRR4302537.3492016/94‑1 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302537.5960870/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGGCCGGCAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGC > SRR4302537.2150217/1‑94 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG > SRR4302537.4692431/1‑94 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302537.345530/94‑1 (MQ=60)
gcgGGGAGTGGCTGGTACATATAGGGCAAAGGCCCGTAAAATCC‑‑GGGTT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA < SRR4302537.3336153/91‑1 (MQ=52)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302537.193714/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC < SRR4302537.1761293/94‑1 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302537.2690146/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302537.2941681/1‑94 (MQ=60)
AGGGAGTGGGTGGTTCATATATGGCAAAAGCGCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA < SRR4302537.3054670/94‑1 (MQ=57)
GGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAA < SRR4302537.5537196/94‑1 (MQ=60)
GGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAA < SRR4302537.3707281/94‑1 (MQ=60)
GAGTGGCTGTTACATATATGGCAAAAGCCCGGAAAGTCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302537.1489672/94‑1 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302537.4987903/94‑1 (MQ=60)
AGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302537.4567577/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC > SRR4302537.4555124/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302537.2015417/94‑1 (MQ=60)
GCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT < SRR4302537.6081853/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302537.6199208/1‑94 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302537.2306933/94‑1 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302537.1298616/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302537.1878587/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302537.1842640/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT < SRR4302537.2042930/94‑1 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT < SRR4302537.6444247/94‑1 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT < SRR4302537.5319504/94‑1 (MQ=60)
GTTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302537.2330848/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302537.3412208/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302537.3020090/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302537.607512/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG < SRR4302537.338708/94‑1 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG > SRR4302537.232804/1‑94 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG > SRR4302537.2652947/1‑94 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG < SRR4302537.6438406/94‑1 (MQ=60)
TACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG < SRR4302537.1748972/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302537.3614286/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > SRR4302537.143213/1‑94 (MQ=60)
CATATATGGCAAAAGCCGGGAAAATCCGGTC‑‑T‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302537.4629587/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302537.2776551/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302537.5960748/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGAAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302537.456248/94‑1 (MQ=60)
ATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA > SRR4302537.2346924/1‑94 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT > SRR4302537.1353117/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302537.4779783/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302537.2742456/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302537.1808355/1‑94 (MQ=60)
ATAGGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302537.5473977/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302537.780468/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302537.790585/94‑1 (MQ=60)
ATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT > SRR4302537.3498662/1‑94 (MQ=60)
ATGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT < SRR4302537.3034147/94‑1 (MQ=60)
TGGCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302537.6133306/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302537.3877197/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT > SRR4302537.2775711/1‑94 (MQ=60)
CAAAATCCCGGAAAATCCGGTC‑‑T‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302537.6262597/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302537.5754362/94‑1 (MQ=60)
AAAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT > SRR4302537.1764097/1‑94 (MQ=60)
AAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT > SRR4302537.455129/1‑94 (MQ=60)
AAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302537.3220393/94‑1 (MQ=60)
AAAGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302537.2619797/94‑1 (MQ=60)
AGCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT < SRR4302537.2951207/94‑1 (MQ=60)
GCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302537.203123/94‑1 (MQ=60)
GCCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT > SRR4302537.273082/1‑94 (MQ=60)
CCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302537.4089779/94‑1 (MQ=60)
CCCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302537.3540222/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302537.2794173/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCT‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302537.6087420/1‑94 (MQ=60)
ccaaaaatccgggctTCGCAGG‑TCCCTCAAGCGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302537.5518948/79‑1 (MQ=60)
ggaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA < SRR4302537.1685268/80‑1 (MQ=60)
ggaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA > SRR4302537.2051258/15‑94 (MQ=60)
gaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAA > SRR4302537.2223692/14‑94 (MQ=60)
aaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302537.4838538/82‑1 (MQ=60)
aaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT > SRR4302537.2565646/13‑94 (MQ=60)
aatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302537.5609473/11‑94 (MQ=60)
aatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302537.5240335/11‑94 (MQ=60)
aatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT < SRR4302537.5958774/84‑1 (MQ=60)
aatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT < SRR4302537.5991639/84‑1 (MQ=60)
atccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTATGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302537.5292840/85‑1 (MQ=60)
atccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302537.996098/10‑94 (MQ=60)
atccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302537.1877294/85‑1 (MQ=60)
atccggactTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302537.692941/10‑94 (MQ=60)
tccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302537.4863571/86‑1 (MQ=60)
ccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302537.4372633/87‑1 (MQ=60)
gggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302537.2356064/89‑1 (MQ=60)
ggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC > SRR4302537.573635/5‑94 (MQ=60)
T‑‑‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302537.5513446/94‑1 (MQ=60)
ctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302537.6335379/3‑94 (MQ=60)
ctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302537.5424163/3‑94 (MQ=60)
ctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302537.1439103/3‑94 (MQ=60)
TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA < SRR4302537.6032222/94‑1 (MQ=60)
|
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑C‑‑‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATA > NC_000913/3957480‑3957643
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
