Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,973,752	A→G	H332R (CAC→CGC)	wecE →	putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,973,752	0	A	G	100.0%	770.4 / NA	223	H332R (CAC→CGC)	wecE	putative regulator
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (123/100); total (123/100)

Only 100 of 235 total aligned reads displayed.

ACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACACTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCG  >  NC_000913/3973662‑3973841

 ccGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCtt                                                                                        <  1:1460565/93‑1 (MQ=255)

 ccGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCtt                                                                                        <  2:2602869/93‑1 (MQ=255)

  cGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCttt                                                                                       >  2:5050295/1‑93 (MQ=255)

   ggAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTg                                                                                      <  2:750116/93‑1 (MQ=255)

   ggAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGGGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGGACGCTTTg                                                                                      >  2:4392621/1‑93 (MQ=255)

   ggAGCGCGTTGATTAACTTTCTGAAAGAACCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTg                                                                                      <  2:6356975/93‑1 (MQ=255)

     aGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGt                                                                                    <  2:4541941/93‑1 (MQ=255)

     aGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGt                                                                                    <  2:4263545/93‑1 (MQ=255)

     aGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGt                                                                                    <  2:6226349/93‑1 (MQ=255)

      gcgcGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTg                                                                                   >  1:4467536/1‑93 (MQ=255)

       cgcgTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGa                                                                                  <  1:5278896/93‑1 (MQ=255)

          gTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGGTGCCCTGCGGGGGAACGCTTTGGTGAGtt                                                                               >  2:5723935/1‑93 (MQ=255)

           ttGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTc                                                                              >  1:4984711/1‑93 (MQ=255)

           ttGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTc                                                                              >  2:4974960/1‑93 (MQ=255)

           ttGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTc                                                                              <  1:1559260/93‑1 (MQ=255)

           ttGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTc                                                                              >  2:643691/1‑93 (MQ=255)

            tGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTcc                                                                             >  2:101894/1‑93 (MQ=255)

             gATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCa                                                                            >  1:4753604/1‑93 (MQ=255)

              aTTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGGACGCTTTGGTGAGTTCCAc                                                                           >  1:3334714/1‑93 (MQ=255)

              aTTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCAc                                                                           <  1:2680486/93‑1 (MQ=255)

              aTTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCAc                                                                           <  1:181805/93‑1 (MQ=255)

              aTTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCAc                                                                           >  2:4192509/1‑93 (MQ=255)

               ttAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACg                                                                          >  2:5782160/1‑93 (MQ=255)

                 aaCTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGt                                                                        <  2:1873943/93‑1 (MQ=255)

                    tttCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGaa                                                                     <  1:6022125/93‑1 (MQ=255)

                     ttCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAg                                                                    >  1:3274409/1‑93 (MQ=255)

                      tCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGa                                                                   >  1:5124997/1‑93 (MQ=255)

                       cTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGAt                                                                  <  1:2988344/93‑1 (MQ=255)

                       cTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGAt                                                                  >  2:1642116/1‑93 (MQ=255)

                       cTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGAt                                                                  <  2:6097/93‑1 (MQ=255)

                       cTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGAt                                                                  <  1:2467065/93‑1 (MQ=255)

                        tGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATc                                                                 <  2:5186152/93‑1 (MQ=255)

                         gAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCg                                                                >  1:4025375/1‑93 (MQ=255)

                          aaaGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGc                                                               <  2:4112958/93‑1 (MQ=255)

                            agaagCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCTGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGGTa                                                             >  1:2670954/1‑93 (MQ=255)

                            agaagCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTa                                                             >  2:4867282/1‑93 (MQ=255)

                             gaagCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTac                                                            <  2:3843420/93‑1 (MQ=255)

                             gaagCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTac                                                            >  2:5824319/1‑93 (MQ=255)

                                 cGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcacca                                                        <  2:72413/93‑1 (MQ=255)

                                 cGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcacca                                                        <  1:700320/93‑1 (MQ=255)

                                  ggAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcaccac                                                       <  2:371065/93‑1 (MQ=255)

                                  ggAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcaccac                                                       >  2:559388/1‑93 (MQ=255)

                                  ggAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcaccac                                                       >  1:1084826/1‑93 (MQ=255)

                                  gaaaaTCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTAcaccac                                                       <  1:2966849/91‑1 (MQ=255)

                                       tCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAag                                                  >  1:3100214/1‑93 (MQ=255)

                                       tCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAag                                                  >  2:705423/1‑93 (MQ=255)

                                        cATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAaga                                                 <  1:4243646/93‑1 (MQ=255)

                                         aTGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAagag                                                <  2:1801650/93‑1 (MQ=255)

                                         aTGACGGTGTATCATTACAATCCGCTGCACGATTGCAATGAGAGAACAAAAATTGGTAAGTTCCACGGTGAAAATCGCTACACCAACCAagag                                                <  1:6470499/93‑1 (MQ=255)

                                          tGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAagaga                                               >  1:4229981/1‑93 (MQ=255)

                                           ggCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAagagag                                              <  1:2623929/93‑1 (MQ=255)

                                           ggCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAagagag                                              >  2:2527521/1‑93 (MQ=255)

                                           ggCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAagagag                                              <  2:591671/93‑1 (MQ=255)

                                            gCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagc                                             <  1:6031912/93‑1 (MQ=255)

                                              ggTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagcga                                           <  1:5381076/93‑1 (MQ=255)

                                               gtgtTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagcgag                                          <  1:5990471/93‑1 (MQ=255)

                                               gtgtTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagcgag                                          <  1:3177014/93‑1 (MQ=255)

                                               gtgtTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagcgag                                          <  1:5067074/93‑1 (MQ=255)

                                                tgtTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAgagcgagc                                         >  1:2312377/1‑93 (MQ=255)

                                                 gtTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGagcgagcg                                        >  1:1663951/1‑93 (MQ=255)

                                                   ttCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGcc                                      <  2:1366408/93‑1 (MQ=255)

                                                   ttCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGcc                                      >  1:6308874/1‑93 (MQ=255)

                                                   ttCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGcc                                      <  1:1339292/93‑1 (MQ=255)

                                                    tCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCct                                     <  2:6179485/93‑1 (MQ=255)

                                                     cATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCctg                                    >  1:1189617/1‑93 (MQ=255)

                                                     cATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCctg                                    >  2:4959324/1‑93 (MQ=255)

                                                      aTTACATTCCGCTGCACGGTTGCCCTGCGGGGGACCGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCctgc                                   <  2:2311634/93‑1 (MQ=255)

                                                      aTTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCctgc                                   >  1:1043365/1‑93 (MQ=255)

                                                       ttACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCctgct                                  <  1:4604119/93‑1 (MQ=255)

                                                         aCATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCtgctgc                                >  2:3282348/1‑93 (MQ=255)

                                                         aCATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCtgctgc                                >  2:3502651/1‑93 (MQ=255)

                                                           aTTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTgcgc                              >  2:5247396/1‑93 (MQ=255)

                                                            ttCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGcc                             >  1:2838495/1‑93 (MQ=255)

                                                            ttCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGcc                             >  1:2339177/1‑93 (MQ=255)

                                                            ttCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGcc                             <  1:5844950/93‑1 (MQ=255)

                                                                gCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGcc                         <  2:4421286/93‑1 (MQ=255)

                                                                gCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGcc                         >  1:4421286/1‑93 (MQ=255)

                                                                 cTGCACGGTTGCGCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACGCCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCg                        <  1:2797926/93‑1 (MQ=255)

                                                                  tGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGc                       <  2:1101482/93‑1 (MQ=255)

                                                                  tGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGc                       <  2:1538444/93‑1 (MQ=255)

                                                                   gCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCt                      >  2:4493083/1‑93 (MQ=255)

                                                                     aCGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGt                    <  2:4122379/93‑1 (MQ=255)

                                                                      cGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGtt                   >  1:1971601/1‑93 (MQ=255)

                                                                      cGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGtt                   >  1:2036946/1‑93 (MQ=255)

                                                                       gatcgCCCTGCGGGGGAACGCTTCGGTGAGTTCCACGGTGAAGAGCGCTACCCCACCAAAGAGAGCGAGCGCCTGCTGCACGTGCCGCTGTTc                  <  2:128846/89‑1 (MQ=255)

                                                                        gTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCt                 >  2:2932439/1‑93 (MQ=255)

                                                                         ttGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTa                >  2:456391/1‑93 (MQ=255)

                                                                         ttGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTa                <  2:3390438/93‑1 (MQ=255)

                                                                           gCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACa              <  1:3885093/93‑1 (MQ=255)

                                                                             ccTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAc            >  1:5822668/1‑93 (MQ=255)

                                                                             ccTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAc            <  1:574085/93‑1 (MQ=255)

                                                                              cTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCCCCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAcc           <  2:5145181/93‑1 (MQ=255)

                                                                              cTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCTCCTGCTGCGCCTGCCGCTGTTCTACAAcc           <  2:4763446/93‑1 (MQ=255)

                                                                              cTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAcc           <  2:5682513/93‑1 (MQ=255)

                                                                               tGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCt          >  2:1090837/1‑93 (MQ=255)

                                                                                  gggggAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTc       <  2:3952328/93‑1 (MQ=255)

                                                                                     ggAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGcc    >  1:3955138/1‑93 (MQ=255)

                                                                                      gAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGccc   >  1:1368333/1‑93 (MQ=255)

                                                                                      gAACGCTTTGGTGAGTCCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGccc   <  2:2017355/93‑1 (MQ=255)

                                                                                       aaCGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCg  >  1:2134409/1‑93 (MQ=255)

ACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACACTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCG  >  NC_000913/3973662‑3973841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACACTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCGTCA  >  NC_000913/3973659‑3973844

ATGACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACG                                                                                              >  SRR4302537.3979973/1‑94 (MQ=60)

ATGACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACG                                                                                              >  SRR4302537.5498628/1‑94 (MQ=60)

    CCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTT                                                                                          <  SRR4302537.3915386/94‑1 (MQ=60)

    CCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTT                                                                                          >  SRR4302537.1574672/1‑94 (MQ=60)

    CCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTT                                                                                          <  SRR4302537.1470730/94‑1 (MQ=60)

    CCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTT                                                                                          <  SRR4302537.2823389/94‑1 (MQ=60)

     CGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTG                                                                                         >  SRR4302537.229890/1‑94 (MQ=60)

     CGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTG                                                                                         <  SRR4302537.896438/94‑1 (MQ=60)

        AGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTG                                                                                      >  SRR4302537.4498433/1‑94 (MQ=60)

          CGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAG                                                                                    >  SRR4302537.3084472/1‑94 (MQ=60)

          CGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAG                                                                                    <  SRR4302537.5315214/94‑1 (MQ=60)

            CGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTT                                                                                  >  SRR4302537.2687431/1‑94 (MQ=60)

             GTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTC                                                                                 >  SRR4302537.2312221/1‑94 (MQ=60)

             GTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTC                                                                                 >  SRR4302537.5019070/1‑94 (MQ=60)

             GTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTC                                                                                 >  SRR4302537.4629826/1‑94 (MQ=60)

              TTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCC                                                                                <  SRR4302537.1570143/94‑1 (MQ=60)

               TGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCA                                                                               >  SRR4302537.4786441/1‑94 (MQ=60)

                GATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGGACGCTTTGGTGAGTTCCAC                                                                              >  SRR4302537.3358311/1‑94 (MQ=60)

                 ATTAACTTTCTGAAAGAAGCGGGAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACG                                                                             >  SRR4302537.1176304/1‑94 (MQ=60)

                 ATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACG                                                                             >  SRR4302537.2886937/1‑94 (MQ=60)

                 ATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACG                                                                             <  SRR4302537.2699202/94‑1 (MQ=60)

                 ATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACG                                                                             <  SRR4302537.2723011/94‑1 (MQ=60)

                 ATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACG                                                                             <  SRR4302537.183096/94‑1 (MQ=60)

                      CTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAA                                                                        >  SRR4302537.5943180/1‑94 (MQ=60)

                       TTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAG                                                                       <  SRR4302537.4479534/94‑1 (MQ=60)

                       TTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAG                                                                       >  SRR4302537.3297518/1‑94 (MQ=60)

                       TTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAG                                                                       <  SRR4302537.6063497/94‑1 (MQ=60)

                        TTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGA                                                                      >  SRR4302537.5160316/1‑94 (MQ=60)

                          CTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATC                                                                    <  SRR4302537.5251823/94‑1 (MQ=60)

                          CTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATC                                                                    <  SRR4302537.3009215/94‑1 (MQ=60)

                          CTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATC                                                                    <  SRR4302537.2484409/94‑1 (MQ=60)

                           TGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCG                                                                   >  SRR4302537.4053556/1‑94 (MQ=60)

                           TGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCG                                                                   <  SRR4302537.2753901/94‑1 (MQ=60)

                             AAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCT                                                                 >  SRR4302537.2333592/1‑94 (MQ=60)

                              AAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCTGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGGTA                                                                >  SRR4302537.2689612/1‑94 (MQ=60)

                                GAAGCGTAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACA                                                              <  SRR4302537.6263527/94‑1 (MQ=60)

                                GAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACA                                                              <  SRR4302537.4269176/94‑1 (MQ=60)

                                  AGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGGACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACC                                                            >  SRR4302537.192534/1‑94 (MQ=60)

                                    CGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCAC                                                          >  SRR4302537.5155613/1‑94 (MQ=60)

                                    CGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCAC                                                          <  SRR4302537.705110/94‑1 (MQ=60)

                                    CGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCAC                                                          >  SRR4302537.1092310/1‑94 (MQ=60)

                                     GGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACC                                                         <  SRR4302537.1052729/94‑1 (MQ=60)

                                     GAAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACC                                                         <  SRR4302537.2987659/94‑1 (MQ=60)

                                         ATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAG                                                     <  SRR4302537.1243672/94‑1 (MQ=60)

                                         ATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAG                                                     <  SRR4302537.6332832/94‑1 (MQ=60)

                                         ATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAG                                                     <  SRR4302537.595247/94‑1 (MQ=60)

                                         ATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAG                                                     >  SRR4302537.3121853/1‑94 (MQ=60)

                                         ATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAG                                                     >  SRR4302537.6066903/1‑94 (MQ=60)

                                           CATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAG                                                   <  SRR4302537.4273142/94‑1 (MQ=60)

                                           CATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAG                                                   >  SRR4302537.5880069/1‑94 (MQ=60)

                                           CATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAG                                                   <  SRR4302537.3502044/94‑1 (MQ=60)

                                           CATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAG                                                   <  SRR4302537.3321176/94‑1 (MQ=60)

                                            ATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGA                                                  >  SRR4302537.5279603/1‑94 (MQ=60)

                                            ATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGA                                                  >  SRR4302537.4259429/1‑94 (MQ=60)

                                            ATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGA                                                  >  SRR4302537.4211087/1‑94 (MQ=60)

                                              GGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGC                                                <  SRR4302537.2642319/94‑1 (MQ=60)

                                              GGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTGCCACGGTGAAGATCGCTACACCACCAAAGAGAGC                                                <  SRR4302537.2694755/94‑1 (MQ=60)

                                               GCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCG                                               <  SRR4302537.6073358/94‑1 (MQ=60)

                                               GCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCG                                               <  SRR4302537.5526703/94‑1 (MQ=60)

                                               GCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACAACCAAAGAGAGCG                                               <  SRR4302537.807350/94‑1 (MQ=60)

                                                CGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGTGGAACGCATTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGA                                              <  SRR4302537.4208839/94‑1 (MQ=60)

                                                CGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGA                                              <  SRR4302537.1997537/94‑1 (MQ=60)

                                                CGGTGTTTCATTACATTCCACTGCACGGTTGCCCTGCGGGGGGACGCTTTGGTCAGCTCCACGGCGAAGATCGCTACACCACCAAAGAGAGCGA                                              >  SRR4302537.2137398/1‑94 (MQ=60)

                                                 GGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAG                                             <  SRR4302537.3193270/94‑1 (MQ=60)

                                                 GGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAG                                             <  SRR4302537.5417874/94‑1 (MQ=60)

                                                  GTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGC                                            >  SRR4302537.1218439/1‑94 (MQ=60)

                                                  GTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGC                                            <  SRR4302537.5101957/94‑1 (MQ=60)

                                                  GTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGC                                            <  SRR4302537.6031613/94‑1 (MQ=60)

                                                  GTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGC                                            >  SRR4302537.2328700/1‑94 (MQ=60)

                                                  GTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGC                                            <  SRR4302537.3199342/94‑1 (MQ=60)

                                                   TGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCG                                           >  SRR4302537.4017947/1‑94 (MQ=60)

                                                   TGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCG                                           >  SRR4302537.1675611/1‑94 (MQ=60)

                                                    GTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGC                                          >  SRR4302537.5402147/1‑94 (MQ=60)

                                                     TTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCC                                         >  SRR4302537.6352070/1‑94 (MQ=60)

                                                      TTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCT                                        <  SRR4302537.1348620/94‑1 (MQ=60)

                                                      TTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCT                                        >  SRR4302537.1824852/1‑94 (MQ=60)

                                                      TTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCG                                        >  SRR4302537.2600507/1‑94 (MQ=60)

                                                       TCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTG                                       >  SRR4302537.1197881/1‑94 (MQ=60)

                                                        CATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGC                                      >  SRR4302537.6379851/1‑94 (MQ=60)

                                                        CATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGC                                      >  SRR4302537.1050568/1‑94 (MQ=60)

                                                        CATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGC                                      >  SRR4302537.3163290/1‑94 (MQ=60)

                                                         ATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCT                                     <  SRR4302537.1363682/94‑1 (MQ=60)

                                                          TTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTG                                    <  SRR4302537.4635997/94‑1 (MQ=60)

                                                            ACATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCG                                  >  SRR4302537.4797625/1‑94 (MQ=60)

                                                             CATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGC                                 >  SRR4302537.1884604/1‑94 (MQ=60)

                                                              ATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCC                                >  SRR4302537.2858357/1‑94 (MQ=60)

                                                              ATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCC                                >  SRR4302537.6034575/1‑94 (MQ=60)

                                                              ATTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCC                                >  SRR4302537.2355663/1‑94 (MQ=60)

                                                               TTCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCT                               <  SRR4302537.5885028/94‑1 (MQ=60)

                                                                TCCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTG                              >  SRR4302537.3579775/1‑94 (MQ=60)

                                                                 CCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGC                             >  SRR4302537.1521376/1‑94 (MQ=60)

                                                                 CCGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGC                             <  SRR4302537.2387032/94‑1 (MQ=60)

                                                                  CGCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCC                            >  SRR4302537.4451812/1‑94 (MQ=60)

                                                                   GCTGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCG                           <  SRR4302537.2992078/94‑1 (MQ=60)

                                                                    CTGCACGGTTGCGCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACGCCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGC                          <  SRR4302537.2817491/94‑1 (MQ=60)

                                                                     TGCACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCT                         >  SRR4302537.673255/1‑94 (MQ=60)

                                                                        ACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTT                      >  SRR4302537.1985312/1‑94 (MQ=60)

                                                                        ACGGTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTT                      >  SRR4302537.2051146/1‑94 (MQ=60)

                                                                           GTTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTA                   <  SRR4302537.5027304/94‑1 (MQ=60)

                                                                            TTGCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTAC                  >  SRR4302537.1453145/1‑94 (MQ=60)

                                                                              GCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAA                >  SRR4302537.295537/1‑94 (MQ=60)

                                                                              GCCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAA                <  SRR4302537.3912268/94‑1 (MQ=60)

                                                                               CCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAC               >  SRR4302537.3225633/1‑94 (MQ=60)

                                                                               CCCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAAC               >  SRR4302537.5862571/1‑94 (MQ=60)

                                                                                CCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACC              >  SRR4302537.5836456/1‑94 (MQ=60)

                                                                                CCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACC              <  SRR4302537.578025/94‑1 (MQ=60)

                                                                                CCTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGAGCCTGCTGCGCCTGCCGCTGTTCTACAACC              >  SRR4302537.4760072/1‑94 (MQ=60)

                                                                                 CTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCT             >  SRR4302537.5718758/1‑94 (MQ=60)

                                                                                 CTGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCT             <  SRR4302537.4452197/94‑1 (MQ=60)

                                                                                  TGCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTG            <  SRR4302537.1520423/94‑1 (MQ=60)

                                                                                   GCGGGGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGT           <  SRR4302537.4277085/94‑1 (MQ=60)

                                                                                     GGGGGAACGCTTGGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCG         <  SRR4302537.2559264/94‑1 (MQ=60)

                                                                                       GGGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCC       >  SRR4302537.3982809/1‑94 (MQ=60)

                                                                                        GGAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCC      >  SRR4302537.1377869/1‑94 (MQ=60)

                                                                                         GAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCG     >  SRR4302537.2149432/1‑94 (MQ=60)

                                                                                         GAACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCAG     >  SRR4302537.4919957/1‑94 (MQ=60)

                                                                                          AACGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCGT    >  SRR4302537.1150982/1‑94 (MQ=60)

                                                                                            CGCTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCGTCA  >  SRR4302537.1278872/1‑94 (MQ=60)

ATGACCGGAGCGCGTTGATTAACTTTCTGAAAGAAGCGGAAATCATGGCGGTGTTTCATTACATTCCGCTGCACGGTTGCCCTGCGGGGGAACACTTTGGTGAGTTCCACGGTGAAGATCGCTACACCACCAAAGAGAGCGAGCGCCTGCTGCGCCTGCCGCTGTTCTACAACCTGTCGCCCGTCA  >  NC_000913/3973659‑3973844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`