Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,976,922 A→G I237V (ATT→GTT)  wecF → TDP‑Fuc4NAc:lipidII transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,976,9220AG100.0% 744.6 / NA 216I237V (ATT→GTT) wecFTDP‑Fuc4NAc:lipidII transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (89/127);  total (89/127)

Only 100 of 233 total aligned reads displayed.

ATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGATTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGC  >  NC_000913/3976832‑3977011
                                                                                          |                                                                                         
atcatcatcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGtt                                                                                         >  2:6478352/1‑93 (MQ=255)
atcatcatcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGtt                                                                                         <  2:3316794/93‑1 (MQ=255)
    tcatcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGttgttg                                                                                     <  2:3280752/93‑1 (MQ=255)
      atcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGc                                                                                   >  2:2536110/1‑93 (MQ=255)
       tcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCa                                                                                  <  2:1447461/93‑1 (MQ=255)
       tcGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCa                                                                                  <  1:5313942/93‑1 (MQ=255)
          cATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGt                                                                               <  1:952048/93‑1 (MQ=255)
          cATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGt                                                                               >  2:1046810/1‑93 (MQ=255)
          cATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGt                                                                               >  2:4291624/1‑93 (MQ=255)
            ttCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGttt                                                                             >  1:4663327/1‑92 (MQ=255)
            ttCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTc                                                                             <  2:5852235/93‑1 (MQ=255)
            ttCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTc                                                                             >  2:3941214/1‑93 (MQ=255)
             tCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTct                                                                            <  2:3816545/93‑1 (MQ=255)
             tCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTct                                                                            <  2:565661/93‑1 (MQ=255)
               gCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTctgg                                                                          <  2:269456/93‑1 (MQ=255)
               gCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTctgg                                                                          <  2:1192981/93‑1 (MQ=255)
                cTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTctggc                                                                         <  2:4143902/93‑1 (MQ=255)
                 tATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGGATGGTctggct                                                                        >  2:1679460/1‑93 (MQ=255)
                    cTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCtggctggc                                                                     >  2:3250280/1‑93 (MQ=255)
                       ccTGTTTATTGGCATTATTTGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACt                                                                  >  2:6309158/1‑93 (MQ=255)
                        cTGTTTTTTGGCATTATTAGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGCTGTTGGCGTGTTCTGGCTGGCACTa                                                                 >  1:3434365/1‑93 (MQ=255)
                           tttATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGTCTGGCACTaaaa                                                              <  1:4594201/93‑1 (MQ=255)
                           tttATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTaaaa                                                              <  1:2889235/93‑1 (MQ=255)
                           tttATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTaaaa                                                              <  1:2933635/93‑1 (MQ=255)
                            ttATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGAGGCGGGAGCGACGGGGGTTGTTGGCATGAGCTGGCTGGACATAAAAc                                                             >  2:2503415/1‑93 (MQ=255)
                             tATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTtaaagc                                                            >  2:3483004/1‑91 (MQ=255)
                             tATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACg                                                            >  1:2786724/1‑93 (MQ=255)
                              aTTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGc                                                           >  1:663644/1‑93 (MQ=255)
                              aTTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGc                                                           >  2:4953682/1‑93 (MQ=255)
                               ttGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCt                                                          >  1:2205346/1‑93 (MQ=255)
                                 ggCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTAt                                                        <  1:3894792/93‑1 (MQ=255)
                                 ggCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTAt                                                        <  1:157736/93‑1 (MQ=255)
                                 ggCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTAt                                                        <  1:5153497/93‑1 (MQ=255)
                                  gCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATg                                                       <  1:5543279/93‑1 (MQ=255)
                                  gCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATg                                                       <  2:5095803/93‑1 (MQ=255)
                                    attattCGCAGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGCGTTGCTGGAGGTTGTTGGCATGTTCTGTCTGGCACTAAAACGCTATGga                                                     <  2:2130557/93‑1 (MQ=255)
                                     ttattCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaa                                                    <  1:1452768/93‑1 (MQ=255)
                                      tattCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaat                                                   >  2:5137640/1‑93 (MQ=255)
                                      tattCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaat                                                   <  1:1923592/93‑1 (MQ=255)
                                      tattCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaat                                                   <  1:1469887/93‑1 (MQ=255)
                                      tattCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaat                                                   <  2:4493262/93‑1 (MQ=255)
                                       attCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaatg                                                  >  1:2540144/1‑93 (MQ=255)
                                         tCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaatgaa                                                <  2:2897425/93‑1 (MQ=255)
                                         tCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaatgaa                                                <  1:5799572/93‑1 (MQ=255)
                                         tCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGgaatgaa                                                <  2:5760363/93‑1 (MQ=255)
                                           gcgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGaatgaatg                                              <  1:5727620/93‑1 (MQ=255)
                                           gcgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGaatgaatg                                              >  1:2688739/1‑93 (MQ=255)
                                           gcgGCTGGATGTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAACCGCTATGGaatgaatg                                              <  1:743099/93‑1 (MQ=255)
                                            cgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAtgt                                             <  1:2476298/93‑1 (MQ=255)
                                            cgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAtgt                                             <  1:3127964/93‑1 (MQ=255)
                                            cgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAtgt                                             <  2:1003261/93‑1 (MQ=255)
                                            cgGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAtgt                                             >  2:2211568/1‑93 (MQ=255)
                                              gCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGa                                           >  1:5998354/1‑93 (MQ=255)
                                               cTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAg                                          <  1:4134479/93‑1 (MQ=255)
                                                tGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgc                                         <  2:4471218/93‑1 (MQ=255)
                                                tGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgc                                         >  2:4091971/1‑93 (MQ=255)
                                                   aTTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgcgtc                                      <  2:6139082/93‑3 (MQ=255)
                                                   aTTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgcggc                                      >  2:2410966/1‑93 (MQ=255)
                                                   aTTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgcggc                                      <  2:4839075/93‑1 (MQ=255)
                                                   aTTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAgcggc                                      <  1:1669788/93‑1 (MQ=255)
                                                     ttCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGa                                    <  2:4962126/93‑1 (MQ=255)
                                                       cGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATg                                  <  2:4170676/93‑1 (MQ=255)
                                                        gTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGa                                 >  2:459811/1‑93 (MQ=255)
                                                         ttGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGaa                                >  1:4460777/1‑93 (MQ=255)
                                                         ttGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGaa                                >  2:2278850/1‑93 (MQ=255)
                                                         ttGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGaa                                >  1:6179916/1‑93 (MQ=255)
                                                         ttGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGaa                                >  1:5071314/1‑93 (MQ=255)
                                                          tgtgGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAg                               <  2:3105539/93‑1 (MQ=255)
                                                          tgtgGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAg                               >  1:689339/1‑93 (MQ=255)
                                                           gtgGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGc                              <  1:4740026/93‑1 (MQ=255)
                                                           gtgGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGc                              <  2:3502610/93‑1 (MQ=255)
                                                            tgGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGAAATGAATGTGAGCGGCGATGAAGCg                             >  1:4488963/1‑93 (MQ=255)
                                                             ggATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGt                            >  1:2245316/1‑93 (MQ=255)
                                                             ggATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGt                            >  2:748497/1‑93 (MQ=255)
                                                              gATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGtt                           <  1:5541822/93‑1 (MQ=255)
                                                                tGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCt                         >  2:375285/1‑93 (MQ=255)
                                                                 gCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCta                        >  2:3350035/1‑93 (MQ=255)
                                                                  cTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCtat                       <  1:1759650/93‑1 (MQ=255)
                                                                  cTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCtat                       <  1:3991094/93‑1 (MQ=255)
                                                                   tGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCtata                      >  1:122373/1‑93 (MQ=255)
                                                                    ggcggcggcGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATAc                     <  1:4977592/93‑1 (MQ=255)
                                                                    ggcggcggcGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATAc                     <  1:3172591/93‑1 (MQ=255)
                                                                       ggcggcggGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGtt                  <  1:3487475/93‑1 (MQ=255)
                                                                        gcggcggGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGttt                 >  1:125104/1‑93 (MQ=255)
                                                                         gggcgggcgTGCTGGGGGTTGTTGTCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTtc                <  2:3616381/92‑1 (MQ=255)
                                                                         cggcggGCGTGCTGGGGGTTGTTGGCATGTTCTGTCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTtc                <  2:2831213/93‑1 (MQ=255)
                                                                         cggcggGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTtc                >  1:4071388/1‑93 (MQ=255)
                                                                               gcgTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtc          <  1:1375734/93‑1 (MQ=255)
                                                                                cgTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtct         <  1:621575/93‑1 (MQ=255)
                                                                                cgTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtct         <  1:428871/93‑1 (MQ=255)
                                                                                 gTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtctc        >  2:512500/1‑93 (MQ=255)
                                                                                 gTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtctc        <  1:3042241/93‑1 (MQ=255)
                                                                                 gTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtctc        >  1:1008884/1‑93 (MQ=255)
                                                                                 gTGCTGGGGGTTATTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAtctc        <  1:4399164/93‑1 (MQ=255)
                                                                                  tGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCa       <  2:854527/93‑1 (MQ=255)
                                                                                   gCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCAc      <  1:1042956/93‑1 (MQ=255)
                                                                                    cTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACt     <  1:3412891/93‑1 (MQ=255)
                                                                                     tGGGGTGTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTc    <  1:6244670/93‑1 (MQ=255)
                                                                                     tGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTc    <  1:422367/93‑1 (MQ=255)
                                                                                     tGGGGGTTGTGGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTc    <  2:6127090/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGATTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGC  >  NC_000913/3976832‑3977011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGATTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGCGACA  >  NC_000913/3976829‑3977015
                                                                                             |                                                                                             
AATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGG                                                                                               >  SRR4302537.1207054/1‑94 (MQ=60)
AATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGG                                                                                               >  SRR4302537.2091542/1‑94 (MQ=60)
AATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGGGCTGGGGG                                                                                               >  SRR4302537.4996332/1‑94 (MQ=60)
 ATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGT                                                                                              <  SRR4302537.2715084/94‑1 (MQ=60)
 ATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGT                                                                                              >  SRR4302537.5422116/1‑94 (MQ=60)
    TCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGT                                                                                           >  SRR4302537.4106472/1‑94 (MQ=60)
      ATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTG                                                                                         <  SRR4302537.5192121/94‑1 (MQ=60)
        CATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGC                                                                                       <  SRR4302537.5289974/94‑1 (MQ=60)
          TCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCAT                                                                                     <  SRR4302537.5350437/94‑1 (MQ=60)
             CATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTT                                                                                  <  SRR4302537.958627/94‑1 (MQ=60)
             CATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGGTGTTGGCATGTT                                                                                  >  SRR4302537.5856369/1‑94 (MQ=60)
              ATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTT                                                                                 >  SRR4302537.4695554/1‑94 (MQ=60)
               TTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCT                                                                                <  SRR4302537.4774337/94‑1 (MQ=60)
               TTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCT                                                                                >  SRR4302537.2180965/1‑94 (MQ=60)
               TTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCT                                                                                <  SRR4302537.4515702/94‑1 (MQ=60)
                 CGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGG                                                                              <  SRR4302537.57076/94‑1 (MQ=60)
                   CTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCT                                                                            >  SRR4302537.1474987/1‑94 (MQ=60)
                   CTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGGTGTTGGCATGTTCTGGCT                                                                            >  SRR4302537.2595427/1‑94 (MQ=60)
                    TATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGGTCTTGCTG                                                                           >  SRR4302537.1240545/1‑94 (MQ=60)
                    TATCTTCCTGTTTATTGGCATTATTCGCGGCTGGACTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGGTTGGGGTTGTTGGCATGTGCTGGCTG                                                                           >  SRR4302537.4005109/1‑94 (MQ=60)
                     ATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTTTTGGCATGTTCTGGCTGG                                                                          >  SRR4302537.1849618/1‑94 (MQ=60)
                     ATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGGTGTTGGCATGTTCTGGCTGG                                                                          >  SRR4302537.5478231/1‑94 (MQ=60)
                      TCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTTGC                                                                         <  SRR4302537.4428483/94‑1 (MQ=60)
                      TCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGC                                                                         <  SRR4302537.1569441/94‑1 (MQ=60)
                        TTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCAC                                                                       >  SRR4302537.252540/1‑94 (MQ=60)
                          CCTGTTTTTTGGCATTATTAGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGCTGTTGGCGTGTTCTGGCTGGCACTA                                                                     >  SRR4302537.3458672/1‑94 (MQ=60)
                             GTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAA                                                                  <  SRR4302537.1820945/94‑1 (MQ=60)
                              TTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGTCTGGCACTAAAAC                                                                 <  SRR4302537.4625977/94‑1 (MQ=60)
                              TTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAAC                                                                 <  SRR4302537.2909511/94‑1 (MQ=60)
                              TTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAAC                                                                 <  SRR4302537.2954236/94‑1 (MQ=60)
                               TTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACG                                                                >  SRR4302537.2806210/1‑94 (MQ=60)
                               TTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACG                                                                <  SRR4302537.2874949/94‑1 (MQ=60)
                                TATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGC                                                               >  SRR4302537.668162/1‑94 (MQ=60)
                                 ATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCT                                                              >  SRR4302537.2220897/1‑94 (MQ=60)
                                 ATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCT                                                              <  SRR4302537.685252/94‑1 (MQ=60)
                                    GGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATG                                                           <  SRR4302537.5189007/94‑1 (MQ=60)
                                    GGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATG                                                           <  SRR4302537.158857/94‑1 (MQ=60)
                                    GGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATG                                                           <  SRR4302537.3922018/94‑1 (MQ=60)
                                     GCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGG                                                          <  SRR4302537.5581129/94‑1 (MQ=60)
                                      CATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGGACTAAAACGCTATGGA                                                         >  SRR4302537.3375267/1‑94 (MQ=60)
                                      CATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGA                                                         >  SRR4302537.1120504/1‑94 (MQ=60)
                                       ATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAA                                                        >  SRR4302537.5044870/1‑94 (MQ=60)
                                        TTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAAT                                                       <  SRR4302537.4389539/94‑1 (MQ=60)
                                        TTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAAT                                                       <  SRR4302537.1027930/94‑1 (MQ=60)
                                        TTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAAT                                                       <  SRR4302537.1462893/94‑1 (MQ=60)
                                         TATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATG                                                      >  SRR4302537.2557956/1‑94 (MQ=60)
                                         TATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATG                                                      <  SRR4302537.739295/94‑1 (MQ=60)
                                         TATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATG                                                      <  SRR4302537.1480108/94‑1 (MQ=60)
                                         TATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATG                                                      <  SRR4302537.2393826/94‑1 (MQ=60)
                                         TATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATG                                                      <  SRR4302537.1936946/94‑1 (MQ=60)
                                            TCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAT                                                   <  SRR4302537.5839333/94‑1 (MQ=60)
                                            TCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAAT                                                   <  SRR4302537.6147523/94‑1 (MQ=60)
                                             CGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATG                                                  >  SRR4302537.2707504/1‑94 (MQ=60)
                                             CGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATG                                                  >  SRR4302537.2752228/1‑94 (MQ=60)
                                              GCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGT                                                 <  SRR4302537.5766826/94‑1 (MQ=60)
                                              GCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGT                                                 <  SRR4302537.4088991/94‑1 (MQ=60)
                                              GCGGCTGGATGTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAACCGCTATGGAATGAATGT                                                 <  SRR4302537.748165/94‑1 (MQ=60)
                                               CGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTG                                                <  SRR4302537.3149888/94‑1 (MQ=60)
                                               CGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTG                                                <  SRR4302537.2493707/94‑1 (MQ=60)
                                                GGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGA                                               >  SRR4302537.6039561/1‑94 (MQ=60)
                                                GGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGA                                               <  SRR4302537.781985/94‑1 (MQ=60)
                                                 GCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAG                                              <  SRR4302537.4447195/94‑1 (MQ=60)
                                                  CTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGC                                             <  SRR4302537.4163327/94‑1 (MQ=60)
                                                  CTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTATGGCTGGCACTAAAACGCTATGGAATGAATGTGAGC                                             <  SRR4302537.6341454/94‑1 (MQ=60)
                                                   TGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCG                                            <  SRR4302537.5182987/94‑1 (MQ=60)
                                                   TGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCG                                            <  SRR4302537.2481817/94‑1 (MQ=60)
                                                   TGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCG                                            <  SRR4302537.1303329/94‑1 (MQ=60)
                                                    GGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGG                                           >  SRR4302537.4302458/1‑94 (MQ=60)
                                                     GATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGC                                          <  SRR4302537.1506819/94‑1 (MQ=60)
                                                      GTTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCG                                         <  SRR4302537.3455987/94‑1 (MQ=60)
                                                      ATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCG                                         <  SRR4302537.1681483/94‑1 (MQ=60)
                                                      ATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCG                                         >  SRR4302537.3815387/1‑94 (MQ=60)
                                                        TTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGGTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGAT                                       >  SRR4302537.771860/1‑94 (MQ=60)
                                                          CGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGA                                     <  SRR4302537.4745136/94‑1 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGGGCGGCGATGAA                                    >  SRR4302537.999288/1‑94 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAA                                    >  SRR4302537.6222484/1‑94 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAA                                    >  SRR4302537.5106229/1‑94 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAA                                    >  SRR4302537.2992797/1‑94 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAA                                    >  SRR4302537.6223217/1‑94 (MQ=60)
                                                           GTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAA                                    >  SRR4302537.4491615/1‑94 (MQ=60)
                                                            TTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAG                                   >  SRR4302537.694061/1‑94 (MQ=60)
                                                            TTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAG                                   >  SRR4302537.4689991/1‑94 (MQ=60)
                                                             TGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGC                                  >  SRR4302537.4526522/1‑94 (MQ=60)
                                                              GTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCG                                 <  SRR4302537.4772789/94‑1 (MQ=60)
                                                              GTGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGAAATGAATGTGAGCGGCGATGAAGCG                                 >  SRR4302537.4520015/1‑94 (MQ=60)
                                                               TGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGT                                >  SRR4302537.412676/1‑94 (MQ=60)
                                                               TGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGT                                >  SRR4302537.6502187/1‑94 (MQ=60)
                                                               TGGATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGT                                >  SRR4302537.2261156/1‑94 (MQ=60)
                                                                 GATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTC                              <  SRR4302537.2251570/94‑1 (MQ=60)
                                                                 GATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTC                              <  SRR4302537.5579663/94‑1 (MQ=60)
                                                                  ATGCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCT                             <  SRR4302537.3166634/94‑1 (MQ=60)
                                                                    GCTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTAT                           >  SRR4302537.13779/1‑94 (MQ=60)
                                                                     CTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATA                          <  SRR4302537.1771916/94‑1 (MQ=60)
                                                                     CTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATA                          <  SRR4302537.4019041/94‑1 (MQ=60)
                                                                     CTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATA                          >  SRR4302537.123254/1‑94 (MQ=60)
                                                                     CTGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATA                          >  SRR4302537.3022300/1‑94 (MQ=60)
                                                                      TGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATAC                         <  SRR4302537.3798449/94‑1 (MQ=60)
                                                                      TGGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATAC                         <  SRR4302537.3312536/94‑1 (MQ=60)
                                                                       GGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACTCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACG                        <  SRR4302537.1648767/94‑1 (MQ=60)
                                                                       GGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACG                        <  SRR4302537.1413633/94‑1 (MQ=60)
                                                                       GGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACG                        <  SRR4302537.3194882/94‑1 (MQ=60)
                                                                       GGCGGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACG                        <  SRR4302537.5011900/94‑1 (MQ=60)
                                                                          GGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTT                     >  SRR4302537.34829/1‑94 (MQ=60)
                                                                          GGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTT                     >  SRR4302537.1752401/1‑94 (MQ=60)
                                                                          GGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTT                     <  SRR4302537.3512137/94‑1 (MQ=60)
                                                                          GGCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTT                     >  SRR4302537.126005/1‑94 (MQ=60)
                                                                           GCGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTC                    >  SRR4302537.4099820/1‑94 (MQ=60)
                                                                            CGGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCT                   <  SRR4302537.3114722/94‑1 (MQ=60)
                                                                             GGCGGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTC                  <  SRR4302537.5836090/94‑1 (MQ=60)
                                                                                GGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAT               <  SRR4302537.2920523/94‑1 (MQ=60)
                                                                                GGGCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTAT               <  SRR4302537.6141792/94‑1 (MQ=60)
                                                                                  GCGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCT             <  SRR4302537.1385339/94‑1 (MQ=60)
                                                                                   CGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTC            <  SRR4302537.431857/94‑1 (MQ=60)
                                                                                   CGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTC            <  SRR4302537.625808/94‑1 (MQ=60)
                                                                                   CGTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTC            >  SRR4302537.1015841/1‑94 (MQ=60)
                                                                                    GTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCA           >  SRR4302537.5579784/1‑94 (MQ=60)
                                                                                    GTGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCA           <  SRR4302537.3063437/94‑1 (MQ=60)
                                                                                    GTGCTGGGGGTTATTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCA           <  SRR4302537.4429520/94‑1 (MQ=60)
                                                                                     TGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCAC          >  SRR4302537.4928818/1‑94 (MQ=60)
                                                                                     TGCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCAC          <  SRR4302537.3933347/94‑1 (MQ=60)
                                                                                     TGCTGGGGGTTGTTGGCATGTTCTGGCTGCCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCAC          <  SRR4302537.4551262/94‑1 (MQ=60)
                                                                                      GCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACT         <  SRR4302537.2743254/94‑1 (MQ=60)
                                                                                      GCTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACT         <  SRR4302537.1050157/94‑1 (MQ=60)
                                                                                       CTGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTC        <  SRR4302537.3437061/94‑1 (MQ=60)
                                                                                        TGGGGTGTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCG       <  SRR4302537.6287584/94‑1 (MQ=60)
                                                                                        TGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCG       <  SRR4302537.6287583/94‑1 (MQ=60)
                                                                                        TGGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCG       <  SRR4302537.425292/94‑1 (MQ=60)
                                                                                         GGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGC      <  SRR4302537.566556/94‑1 (MQ=60)
                                                                                         GGGGGTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGC      >  SRR4302537.4165476/1‑94 (MQ=60)
                                                                                             GTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGCGACA  <  SRR4302537.5923153/94‑1 (MQ=60)
                                                                                             GTTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGCGACA  >  SRR4302537.2453698/1‑94 (MQ=60)
                                                                                             |                                                                                             
AATATCATCATCGCATTCGCTATCTTCCTGTTTATTGGCATTATTCGCGGCTGGATTTCGTTGTGGATGCTGGCGGCGGCGGGCGTGCTGGGGATTGTTGGCATGTTCTGGCTGGCACTAAAACGCTATGGAATGAATGTGAGCGGCGATGAAGCGTTCTATACGTTTCTCTATCTCACTCGCGACA  >  NC_000913/3976829‑3977015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑