Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,979,535	+G	coding (1036/1386 nt)	yifK →	putative amino acid/amine transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,979,534	1	.	G	99.5%	751.6 / ‑4.4	212	I345M (ATT→ATG)	yifK	putative amino acid/amine transport protein
Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (110/100); minor base C (0/1); total (110/102)
Fisher's exact test for biased strand distribution p-value = 4.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01

Only 100 of 230 total aligned reads displayed.

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT  >  NC_000913/3979442‑3979622

aaaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAtt                                                                                           <  1:4212049/93‑1 (MQ=255)

aaaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAtt                                                                                           <  1:1671182/93‑1 (MQ=255)

aaaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGCTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAtt                                                                                           >  1:244059/1‑93 (MQ=255)

 aaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑g                                                                                         <  1:6243394/93‑1 (MQ=255)

 aaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGGTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑g                                                                                         >  2:5255360/1‑93 (MQ=255)

  aaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑gg                                                                                        >  2:828548/1‑92 (MQ=255)

     ccGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑ggctc                                                                                     <  1:1477117/93‑5 (MQ=255)

       gTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCAt                                                                                    >  1:5043199/1‑93 (MQ=255)

        tCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATg                                                                                   <  2:556379/93‑1 (MQ=255)

        tCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATg                                                                                   <  2:4948029/93‑1 (MQ=255)

         cAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGc                                                                                  <  2:3590353/93‑1 (MQ=255)

          aGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGcc                                                                                 <  1:5439621/93‑1 (MQ=255)

          aGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGcc                                                                                 <  1:2291542/93‑1 (MQ=255)

          aGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGcc                                                                                 >  1:5736440/1‑93 (MQ=255)

              gccGGCGGCAATGGCGCAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCGAATTGGCTCATGCCTgaa                                                                             <  2:2826223/92‑3 (MQ=255)

              aCCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaa                                                                             <  1:4328845/93‑3 (MQ=255)

                 ggcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTa                                                                         >  1:96566/1‑93 (MQ=255)

                  gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAc                                                                        <  2:1034612/93‑1 (MQ=255)

                   cggcAATGCCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAca                                                                       <  2:189164/93‑1 (MQ=255)

                    ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                      >  2:2466260/1‑93 (MQ=255)

                     gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatc                                                                     >  1:2865272/1‑93 (MQ=255)

                     gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatc                                                                     >  1:3415792/1‑93 (MQ=255)

                      cAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatca                                                                    <  1:3028097/93‑1 (MQ=255)

                       aaTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatcat                                                                   <  2:1510341/93‑1 (MQ=255)

                        aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAtt                                                                  >  2:5641490/1‑93 (MQ=255)

                        aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGACAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAtt                                                                  >  1:3466186/1‑93 (MQ=255)

                          ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                <  2:5753568/93‑1 (MQ=255)

                          ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                <  1:5884722/93‑1 (MQ=255)

                          ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                <  1:6182773/93‑1 (MQ=255)

                          ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                >  1:1579781/1‑93 (MQ=255)

                           gCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTccc                                                               <  2:2808212/93‑1 (MQ=255)

                            cGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCa                                                              >  1:3409701/1‑93 (MQ=255)

                              aaaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAAt                                                            >  2:4246097/1‑93 (MQ=255)

                              aaaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAAt                                                            >  2:3799163/1‑93 (MQ=255)

                               aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                           <  2:4334621/93‑1 (MQ=255)

                                 gTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCg                                                         <  2:3331730/93‑1 (MQ=255)

                                   ttCGCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                                       <  1:1069897/93‑1 (MQ=255)

                                       cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                   <  1:5619166/93‑1 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  >  1:4130868/1‑93 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  <  2:3256865/93‑1 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  >  1:6150924/1‑93 (MQ=255)

                                            cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                                              <  2:732459/93‑1 (MQ=255)

                                            cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                                              >  2:1819720/1‑93 (MQ=255)

                                              gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                                            >  1:2811625/1‑93 (MQ=255)

                                              gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                                            <  1:5823890/93‑1 (MQ=255)

                                              gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                                            >  1:2161856/1‑93 (MQ=255)

                                               cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgt                                           <  2:2254469/93‑1 (MQ=255)

                                                gTACCGGTTGCGGGTGTGGCGGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                          <  1:489194/93‑1 (MQ=255)

                                                gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                          >  1:2699660/1‑93 (MQ=255)

                                                gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTCGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                          <  1:1949426/93‑1 (MQ=255)

                                                 tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtct                                         >  2:1257621/1‑93 (MQ=255)

                                                  aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                                        >  2:5390065/1‑93 (MQ=255)

                                                  aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                                        <  2:512066/93‑1 (MQ=255)

                                                   ccGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctac                                       >  1:237672/1‑93 (MQ=255)

                                                      gTTGCGGGTGTTGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    >  2:2372705/1‑93 (MQ=255)

                                                      gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    >  1:6230462/1‑93 (MQ=255)

                                                       ttGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct                                   <  2:4965354/93‑1 (MQ=255)

                                                       ttGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct                                   >  1:4425761/1‑93 (MQ=255)

                                                        tGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtcta                                  <  1:5673650/93‑1 (MQ=255)

                                                           gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                               >  1:2027137/1‑93 (MQ=255)

                                                            ggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGt                              >  1:5198014/1‑93 (MQ=255)

                                                             gtgtGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg                             >  2:1442931/1‑93 (MQ=255)

                                                             gtgtGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg                             <  2:4615862/93‑1 (MQ=255)

                                                             gtgtGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg                             >  2:2939967/1‑93 (MQ=255)

                                                               gtgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGcc                           >  2:1603791/1‑93 (MQ=255)

                                                                tgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa                          >  2:1787448/1‑93 (MQ=255)

                                                                   cAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCg                       <  1:3631934/93‑1 (MQ=255)

                                                                   cAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCg                       <  2:2489314/93‑1 (MQ=255)

                                                                    aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt                      <  1:4863600/93‑1 (MQ=255)

                                                                    aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt                      >  1:1282896/1‑93 (MQ=255)

                                                                    aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt                      >  1:1168771/1‑93 (MQ=255)

                                                                    aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTACCAGCGt                      >  2:4004240/1‑93 (MQ=255)

                                                                     gTATCTATTGCTATTCTGCTAATTGGCGCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg                     >  1:6463906/1‑93 (MQ=255)

                                                                      tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                    >  1:3311824/1‑93 (MQ=255)

                                                                      tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                    >  2:4115689/1‑93 (MQ=255)

                                                                       aTCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                   >  2:6446435/1‑93 (MQ=255)

                                                                        tCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                  >  2:5904312/1‑93 (MQ=255)

                                                                        tCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                  >  2:5318804/1‑93 (MQ=255)

                                                                          tATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                >  2:6382090/1‑93 (MQ=255)

                                                                          tATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                <  1:1125560/93‑1 (MQ=255)

                                                                          tATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                >  2:3418845/1‑93 (MQ=255)

                                                                            ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg              <  2:4739012/93‑1 (MQ=255)

                                                                            ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg              >  1:2214811/1‑93 (MQ=255)

                                                                             tGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg             <  2:5450005/93‑1 (MQ=255)

                                                                               cTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGa           >  1:2513589/1‑93 (MQ=255)

                                                                               cTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGa           <  1:6111474/93‑1 (MQ=255)

                                                                               cTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGa           >  1:1371998/1‑93 (MQ=255)

                                                                               cTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGa           >  1:277580/1‑93 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGag          >  2:6128464/1‑92 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt          <  2:6406868/93‑1 (MQ=255)

                                                                                 aTTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg         >  1:6023827/1‑93 (MQ=255)

                                                                                  ttCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATgg        <  2:4201801/93‑1 (MQ=255)

                                                                                     tGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGc     >  1:3772920/1‑93 (MQ=255)

                                                                                       cTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCa   >  1:4473258/1‑93 (MQ=255)

                                                                                       cTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCa   >  1:4023913/1‑93 (MQ=255)

                                                                                       cTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCa   <  2:712650/93‑1 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  <  1:2208480/93‑1 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  >  1:3491709/1‑93 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  >  1:1766498/1‑93 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  >  1:3860735/1‑93 (MQ=255)

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT  >  NC_000913/3979442‑3979622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG  >  NC_000913/3979442‑3979628

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G                                                                                                <  SRR4302537.1682885/94‑1 (MQ=60)

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G                                                                                                <  SRR4302537.4241424/94‑1 (MQ=60)

 AAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G‑G                                                                                              <  SRR4302537.5166088/94‑1 (MQ=60)

 AAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G‑G                                                                                              >  SRR4302537.20402/1‑94 (MQ=60)

 AAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G‑G                                                                                              <  SRR4302537.6286305/94‑1 (MQ=60)

   AACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑Ggct                                                                                             <  SRR4302537.3017735/94‑4 (MQ=60)

    ACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTC                                                                                            >  SRR4302537.569673/1‑94 (MQ=60)

     CCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCA                                                                                           >  SRR4302537.5266954/1‑94 (MQ=60)

     CCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCA                                                                                           <  SRR4302537.5249511/94‑1 (MQ=60)

     CCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCA                                                                                           <  SRR4302537.1487387/94‑1 (MQ=60)

     CCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCA                                                                                           >  SRR4302537.3400906/1‑94 (MQ=60)

      CGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCAT                                                                                          >  SRR4302537.5077930/1‑94 (MQ=60)

       GTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATG                                                                                         >  SRR4302537.5127516/1‑94 (MQ=60)

       GTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATG                                                                                         >  SRR4302537.2360455/1‑94 (MQ=60)

        TCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGC                                                                                        >  SRR4302537.5544202/1‑94 (MQ=60)

         CAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCC                                                                                       >  SRR4302537.4064769/1‑94 (MQ=60)

         CAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCC                                                                                       >  SRR4302537.5775716/1‑94 (MQ=60)

         CAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCC                                                                                       >  SRR4302537.1607301/1‑94 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT                                                                                      <  SRR4302537.6082196/94‑1 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT                                                                                      <  SRR4302537.2307723/94‑1 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT                                                                                      >  SRR4302537.4924757/1‑94 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT                                                                                      <  SRR4302537.5476729/94‑1 (MQ=60)

            TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATCG‑G‑CTCATGCCTGA                                                                                    <  SRR4302537.3512417/94‑1 (MQ=60)

              ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAAC                                                                                 <  SRR4302537.4358925/94‑1 (MQ=60)

              ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAAC                                                                                 <  SRR4302537.2270598/94‑1 (MQ=60)

                CGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTA                                                                               >  SRR4302537.97271/1‑94 (MQ=60)

                 GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTATCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTAC                                                                              <  SRR4302537.5732694/94‑1 (MQ=60)

                 GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTAC                                                                              <  SRR4302537.4748275/94‑1 (MQ=60)

                  GCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACA                                                                             <  SRR4302537.3769073/94‑1 (MQ=60)

                  GCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACA                                                                             >  SRR4302537.5731382/1‑94 (MQ=60)

                  GCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACA                                                                             <  SRR4302537.5928325/94‑1 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATC                                                                           <  SRR4302537.1624702/94‑1 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATC                                                                           >  SRR4302537.3439977/1‑94 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATC                                                                           >  SRR4302537.2885362/1‑94 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCAT                                                                         <  SRR4302537.3649829/94‑1 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCAT                                                                         >  SRR4302537.2156560/1‑94 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCAT                                                                         >  SRR4302537.5068113/1‑94 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCAT                                                                         <  SRR4302537.3049210/94‑1 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCAT                                                                         >  SRR4302537.2403435/1‑94 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATT                                                                        <  SRR4302537.2875020/94‑1 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATT                                                                        <  SRR4302537.3860270/94‑1 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGACAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATT                                                                        >  SRR4302537.3490698/1‑94 (MQ=60)

                       AATGGCGAAAGTTTCCCGCCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATT                                                                        <  SRR4302537.989982/94‑1 (MQ=60)

                         TGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCC                                                                      >  SRR4302537.1590820/1‑94 (MQ=60)

                          GGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCC                                                                     <  SRR4302537.5925103/94‑1 (MQ=60)

                          GGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCC                                                                     <  SRR4302537.4230555/94‑1 (MQ=60)

                          GGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCC                                                                     <  SRR4302537.6225359/94‑1 (MQ=60)

                           GCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCA                                                                    >  SRR4302537.3433854/1‑94 (MQ=60)

                            CGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAA                                                                   >  SRR4302537.6230407/1‑94 (MQ=60)

                             GAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAAT                                                                  >  SRR4302537.1154919/1‑94 (MQ=60)

                              AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATC                                                                 <  SRR4302537.3801484/94‑1 (MQ=60)

                               AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCC                                                                <  SRR4302537.6516886/94‑1 (MQ=60)

                                AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCG                                                               <  SRR4302537.1564568/94‑1 (MQ=60)

                                  TTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCA                                                             >  SRR4302537.5789051/1‑94 (MQ=60)

                                   TTCGCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                            <  SRR4302537.1077276/94‑1 (MQ=60)

                                   TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                            <  SRR4302537.5924710/94‑1 (MQ=60)

                                      CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGT                                                         <  SRR4302537.1376736/94‑1 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                        >  SRR4302537.6193231/1‑94 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                        <  SRR4302537.5657590/94‑1 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                        >  SRR4302537.4159697/1‑94 (MQ=60)

                                        GTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGT                                                       >  SRR4302537.2538994/1‑94 (MQ=60)

                                            CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                   <  SRR4302537.2030905/94‑1 (MQ=60)

                                            CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                   <  SRR4302537.3504168/94‑1 (MQ=60)

                                            CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                   <  SRR4302537.2202946/94‑1 (MQ=60)

                                             GGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTG                                                  <  SRR4302537.6283703/94‑1 (MQ=60)

                                             GGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTG                                                  >  SRR4302537.2177094/1‑94 (MQ=60)

                                             GGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTG                                                  >  SRR4302537.2831284/1‑94 (MQ=60)

                                              GCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGT                                                 <  SRR4302537.5863804/94‑1 (MQ=60)

                                               CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                >  SRR4302537.2718519/1‑94 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCGGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                               <  SRR4302537.492554/94‑1 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                               >  SRR4302537.6344554/1‑94 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                               >  SRR4302537.1361461/1‑94 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                               >  SRR4302537.3434631/1‑94 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TCG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                               <  SRR4302537.1962982/94‑1 (MQ=60)

                                                  ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                             >  SRR4302537.239353/1‑94 (MQ=60)

                                                     GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                          >  SRR4302537.6273322/1‑94 (MQ=60)

                                                     GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                          >  SRR4302537.3352770/1‑94 (MQ=60)

                                                      GTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCT                                         >  SRR4302537.4456331/1‑94 (MQ=60)

                                                        TGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTAC                                       <  SRR4302537.5712470/94‑1 (MQ=60)

                                                          CGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                     >  SRR4302537.2041274/1‑94 (MQ=60)

                                                           GGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                    >  SRR4302537.5957791/1‑94 (MQ=60)

                                                           GGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                    >  SRR4302537.5233775/1‑94 (MQ=60)

                                                            GGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTG                                   >  SRR4302537.6217232/1‑94 (MQ=60)

                                                            GGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTG                                   >  SRR4302537.397198/1‑94 (MQ=60)

                                                             GTGTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGC                                  >  SRR4302537.3464766/1‑94 (MQ=60)

                                                               GTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCA                                <  SRR4302537.1085766/94‑1 (MQ=60)

                                                               GTGGCAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCA                                <  SRR4302537.2813350/94‑1 (MQ=60)

                                                                   CAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                            >  SRR4302537.1176902/1‑94 (MQ=60)

                                                                   CAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                            >  SRR4302537.1291814/1‑94 (MQ=60)

                                                                   CAGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                            <  SRR4302537.3657524/94‑1 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           >  SRR4302537.6196745/1‑94 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           <  SRR4302537.2225267/94‑1 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           >  SRR4302537.4369599/1‑94 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           <  SRR4302537.4897154/94‑1 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           >  SRR4302537.854320/1‑94 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAAT‑TGG‑CGCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                           >  SRR4302537.6507695/1‑94 (MQ=60)

                                                                     GTATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGC                          >  SRR4302537.3335255/1‑94 (MQ=60)

                                                                      TATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCT                         >  SRR4302537.1457583/1‑94 (MQ=60)

                                                                      TATCTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCT                         <  SRR4302537.2499344/94‑1 (MQ=60)

                                                                         CTATTGCTATTCTGCTAAT‑TGG‑CTCATTCCT‑GAACTACATCATTCCCAATCCGCAGCGCGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                      >  SRR4302537.2823675/1‑94 (MQ=60)

                                                                         CTATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                      <  SRR4302537.4273310/94‑1 (MQ=60)

                                                                          TATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                     >  SRR4302537.1753455/1‑94 (MQ=60)

                                                                          TATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                     <  SRR4302537.1133365/94‑1 (MQ=60)

                                                                           ATTGCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                    >  SRR4302537.2230431/1‑94 (MQ=60)

                                                                              TCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                 <  SRR4302537.2470087/94‑1 (MQ=60)

                                                                              GCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                 >  SRR4302537.279521/1‑94 (MQ=60)

                                                                              GCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                 >  SRR4302537.1381576/1‑94 (MQ=60)

                                                                              GCTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                 >  SRR4302537.2531259/1‑94 (MQ=60)

                                                                               CTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                <  SRR4302537.6153472/94‑1 (MQ=60)

                                                                               CTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                <  SRR4302537.1784238/94‑1 (MQ=60)

                                                                               CTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                >  SRR4302537.4507613/1‑94 (MQ=60)

                                                                               CTATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                >  SRR4302537.2290044/1‑94 (MQ=60)

                                                                                TATTCTGCTAAT‑TGG‑CTCATGCCT‑GCACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG               >  SRR4302537.3370306/1‑94 (MQ=60)

                                                                                TATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG               >  SRR4302537.6172987/1‑94 (MQ=60)

                                                                                TATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG               >  SRR4302537.1242884/1‑94 (MQ=60)

                                                                                TATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG               >  SRR4302537.6065220/1‑94 (MQ=60)

                                                                                 ATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG              >  SRR4302537.4485596/1‑94 (MQ=60)

                                                                                 ATTCTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG              >  SRR4302537.4307924/1‑94 (MQ=60)

                                                                                    CTGCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGC           >  SRR4302537.3799406/1‑94 (MQ=60)

                                                                                      GCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA         >  SRR4302537.4504205/1‑94 (MQ=60)

                                                                                      GCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA         >  SRR4302537.3294396/1‑94 (MQ=60)

                                                                                      GCTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA         >  SRR4302537.4052086/1‑94 (MQ=60)

                                                                                       CTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT        >  SRR4302537.1778798/1‑94 (MQ=60)

                                                                                       CTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT        >  SRR4302537.3516408/1‑94 (MQ=60)

                                                                                       CTAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT        >  SRR4302537.3887759/1‑94 (MQ=60)

                                                                                       CTAAT‑T‑GTCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT        <  SRR4302537.2775006/94‑1 (MQ=60)

                                                                                        TAAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG       <  SRR4302537.2224048/94‑1 (MQ=60)

                                                                                         AAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGCTGGTGCCATGG      >  SRR4302537.1248878/1‑94 (MQ=60)

                                                                                         AAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG      <  SRR4302537.2286347/94‑1 (MQ=60)

                                                                                         AAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG      <  SRR4302537.6257414/94‑1 (MQ=60)

                                                                                         AAT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG      <  SRR4302537.4345542/94‑1 (MQ=60)

                                                                                          AT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT     >  SRR4302537.1397115/1‑94 (MQ=60)

                                                                                          AT‑TGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT     >  SRR4302537.4696738/1‑94 (MQ=60)

                                                                                             G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG  <  SRR4302537.1467259/94‑1 (MQ=60)

                                                                                             G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG  <  SRR4302537.701784/94‑1 (MQ=60)

                                                                                             G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG  <  SRR4302537.918838/94‑1 (MQ=60)

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAAT‑T‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG  >  NC_000913/3979442‑3979628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`