Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,997,520 A→G E642G (GAA→GGA)  uvrD → DNA‑dependent ATPase I and helicase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,997,5200AG100.0% 759.9 / NA 218E642G (GAA→GGA) uvrDDNA‑dependent ATPase I and helicase II
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (124/94);  total (124/94)

Only 100 of 231 total aligned reads displayed.

TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGC  >  NC_000913/3997430‑3997609
                                                                                          |                                                                                         
tGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGCGTGTGTGGGag                                                                                         >  1:886430/1‑93 (MQ=255)
tGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGag                                                                                         <  1:5646640/93‑1 (MQ=255)
 gACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGgaga                                                                                        >  1:3624183/1‑93 (MQ=255)
 gACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGgaga                                                                                        >  1:2068324/1‑93 (MQ=255)
  aCCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGagag                                                                                       <  2:2957860/93‑1 (MQ=255)
  aCCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGagag                                                                                       >  1:1997655/1‑93 (MQ=255)
   ccTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAgg                                                                                      >  1:5104450/1‑93 (MQ=255)
    cTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAggg                                                                                     >  2:2551610/1‑92 (MQ=255)
     tACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTg                                                                                    >  1:1512849/1‑93 (MQ=255)
         cgGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGcc                                                                                >  2:1584544/1‑93 (MQ=255)
         cgGAAACCAGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGcc                                                                                >  2:6289702/1‑93 (MQ=255)
          ggAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCt                                                                               >  2:2178833/1‑93 (MQ=255)
          ggAAACCCGCCGCCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCt                                                                               >  2:5666535/1‑93 (MQ=255)
            aaaCCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTgc                                                                             >  1:1225711/1‑93 (MQ=255)
             aaCCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTgcg                                                                            >  1:4335015/1‑93 (MQ=255)
              aCCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTgcgc                                                                           >  2:4679289/1‑93 (MQ=255)
                ccgccgTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTgcgcgc                                                                         >  2:5794704/1‑93 (MQ=255)
                 cgccgTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGcc                                                                        >  2:6216218/1‑93 (MQ=255)
                  gccgTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGGGTGTGGGTGAGGTGCGCCTGCGCGCCa                                                                       >  2:2049644/1‑93 (MQ=255)
                      tCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGt                                                                   >  1:6442157/1‑93 (MQ=255)
                       cTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTa                                                                  <  2:5449875/93‑1 (MQ=255)
                       cTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTa                                                                  <  2:831421/93‑1 (MQ=255)
                        tGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTaa                                                                 >  2:2981790/1‑93 (MQ=255)
                        tGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTaa                                                                 <  2:660272/93‑1 (MQ=255)
                        tGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTaa                                                                 <  1:2301019/93‑1 (MQ=255)
                        tGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTaa                                                                 >  1:2129357/1‑93 (MQ=255)
                         gTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAg                                                                >  1:1037790/1‑93 (MQ=255)
                          tATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGCAGAGCGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgc                                                               >  2:5872898/1‑93 (MQ=255)
                          tATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgc                                                               <  2:8157/93‑1 (MQ=255)
                            tGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGCGGTGCGCCTGCGCGCCACGGTAAgacg                                                             >  1:3242581/1‑93 (MQ=255)
                            tGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgccg                                                             >  2:3297592/1‑93 (MQ=255)
                            tGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgccc                                                             >  1:1166326/1‑92 (MQ=255)
                             ggTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgccgc                                                            >  1:4949057/1‑93 (MQ=255)
                              gTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgccgcc                                                           <  2:3210675/93‑1 (MQ=255)
                              gTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAgccgcc                                                           <  1:5116847/93‑1 (MQ=255)
                               tAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGccc                                                          >  2:4757796/1‑93 (MQ=255)
                               tAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGccc                                                          <  1:6348123/93‑1 (MQ=255)
                               tAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGccc                                                          <  1:2977768/93‑1 (MQ=255)
                               tAAAGAGATTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGccc                                                          <  2:3036814/93‑1 (MQ=255)
                                aaaGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCg                                                         >  1:5457550/1‑93 (MQ=255)
                                   gagGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTc                                                      <  1:2718843/93‑1 (MQ=255)
                                    agGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCa                                                     >  1:4230530/1‑93 (MQ=255)
                                     ggTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAg                                                    >  1:2386433/1‑93 (MQ=255)
                                      gTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGATAAGCCGCCCGGTCAGc                                                   >  2:1469975/1‑93 (MQ=255)
                                        ttcccATCGCCCGTCGCGCTTTAGCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCa                                                 <  2:2488716/90‑1 (MQ=255)
                                        ttACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCa                                                 <  2:1416039/93‑1 (MQ=255)
                                        ttACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGGGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCa                                                 >  2:1612642/1‑93 (MQ=255)
                                         tACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCAt                                                >  2:6101364/1‑93 (MQ=255)
                                           ccATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCa                                              <  1:3943962/93‑1 (MQ=255)
                                            cATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAg                                             <  2:4205679/93‑1 (MQ=255)
                                             ctCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGc                                            <  1:60325/92‑1 (MQ=255)
                                             aTCGCCCGTCGCGCTTTATCGGCGCGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGc                                            >  1:2606969/1‑93 (MQ=255)
                                             aTCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGc                                            <  1:1848557/93‑1 (MQ=255)
                                             aTCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGGGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGc                                            >  1:3824321/1‑93 (MQ=255)
                                               cGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCgg                                          >  2:3677775/1‑93 (MQ=255)
                                                gCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGCGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGa                                         >  2:6265728/1‑93 (MQ=255)
                                                  ccGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATg                                       <  2:3532901/93‑1 (MQ=255)
                                                  ccGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATg                                       >  1:520602/1‑93 (MQ=255)
                                                  ccGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATg                                       <  1:2835034/93‑1 (MQ=255)
                                                    gTCGCTCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATggg                                     <  2:3359125/93‑1 (MQ=255)
                                                    gTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATggg                                     <  2:4985989/93‑1 (MQ=255)
                                                    gTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATggg                                     >  1:4816417/1‑93 (MQ=255)
                                                     tCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGt                                    >  1:4638229/1‑93 (MQ=255)
                                                      cgcgCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTa                                   <  2:1269985/93‑1 (MQ=255)
                                                       gcgcTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGGAc                                  >  2:414856/1‑93 (MQ=255)
                                                        cgcTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGGAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACg                                 >  1:3423518/1‑93 (MQ=255)
                                                         gcTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGGCCGGGCAGCCATCAGCGGCTGGCTACGc                                >  2:5702215/1‑93 (MQ=255)
                                                         gcTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGc                                >  1:2876149/1‑93 (MQ=255)
                                                          cTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGcc                               >  1:2570855/1‑93 (MQ=255)
                                                           tttATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCg                              >  2:136200/1‑93 (MQ=255)
                                                           tttATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGGGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCg                              >  1:4013633/1‑93 (MQ=255)
                                                             tATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGAt                            <  1:4765344/93‑1 (MQ=255)
                                                                cGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGt                         <  2:4335015/93‑1 (MQ=255)
                                                                  gCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCg                       >  2:5495391/1‑93 (MQ=255)
                                                                  gCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCg                       >  2:5943357/1‑93 (MQ=255)
                                                                   ggAGCTGCCGCAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCga                      <  2:5236656/92‑1 (MQ=255)
                                                                      gCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGaa                   >  2:441640/1‑93 (MQ=255)
                                                                       gtGCGGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAc                  <  1:5498150/92‑1 (MQ=255)
                                                                       cTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAc                  <  1:2429531/93‑1 (MQ=255)
                                                                       cTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAc                  <  1:3336176/93‑1 (MQ=255)
                                                                       cTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAc                  >  2:1929004/1‑93 (MQ=255)
                                                                        tGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACg                 >  2:4563357/1‑93 (MQ=255)
                                                                          ccGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGAc               <  1:1561275/93‑1 (MQ=255)
                                                                           cGGAAGAGGGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACa              >  1:2790011/1‑93 (MQ=255)
                                                                             gAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGc            <  1:4647702/93‑1 (MQ=255)
                                                                             gAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGc            >  1:513166/1‑93 (MQ=255)
                                                                             gAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGc            <  2:2344334/93‑1 (MQ=255)
                                                                             gAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGc            >  1:5592393/1‑93 (MQ=255)
                                                                              aaGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCg           <  2:3707100/93‑1 (MQ=255)
                                                                              aaGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCg           <  1:3597507/93‑1 (MQ=255)
                                                                               agagTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCgg          >  1:2402244/1‑93 (MQ=255)
                                                                                gagTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAAGAAAGCGGc         >  1:3547829/1‑93 (MQ=255)
                                                                                  gtgtgtGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTa       >  1:555830/1‑93 (MQ=255)
                                                                                   tgtgtgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTAc      >  2:5087741/1‑93 (MQ=255)
                                                                                     tgtgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACaa    >  1:3467610/1‑93 (MQ=255)
                                                                                     tgtgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACaa    >  2:3817576/1‑93 (MQ=255)
                                                                                      gtgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAg   <  1:5262402/93‑1 (MQ=255)
                                                                                      gtgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAg   <  2:5042002/93‑1 (MQ=255)
                                                                                       tgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGc  <  1:3088807/93‑1 (MQ=255)
                                                                                       tgGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGc  <  1:4513960/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGC  >  NC_000913/3997430‑3997609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGG  >  NC_000913/3997427‑3997613
                                                                                             |                                                                                             
CGCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTTCCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGG                                                                                               <  SRR4302537.2819524/94‑1 (MQ=60)
CGCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGG                                                                                               <  SRR4302537.2708976/94‑1 (MQ=60)
CGCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGG                                                                                               >  SRR4302537.92785/1‑94 (MQ=60)
 GCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGA                                                                                              >  SRR4302537.4574172/1‑94 (MQ=60)
 GCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGA                                                                                              >  SRR4302537.4569234/1‑94 (MQ=60)
 GCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGA                                                                                              <  SRR4302537.4552927/94‑1 (MQ=60)
 GCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGA                                                                                              >  SRR4302537.1643245/1‑94 (MQ=60)
  CTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGCGTGTGTGGGAG                                                                                             >  SRR4302537.892529/1‑94 (MQ=60)
  CTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAG                                                                                             <  SRR4302537.2453924/94‑1 (MQ=60)
  CTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAG                                                                                             >  SRR4302537.1845792/1‑94 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            >  SRR4302537.5188013/1‑94 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            <  SRR4302537.2968796/94‑1 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            >  SRR4302537.2082857/1‑94 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            <  SRR4302537.5685284/94‑1 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            >  SRR4302537.3649725/1‑94 (MQ=60)
   TGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGA                                                                                            >  SRR4302537.3604527/1‑94 (MQ=60)
    GACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAG                                                                                           >  SRR4302537.2011545/1‑94 (MQ=60)
     ACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGGGG                                                                                          >  SRR4302537.2112229/1‑94 (MQ=60)
     ACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGG                                                                                          >  SRR4302537.5139631/1‑94 (MQ=60)
     ACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGG                                                                                          >  SRR4302537.3449788/1‑94 (MQ=60)
       CTACGCGGAAACGCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTG                                                                                        <  SRR4302537.2840327/94‑1 (MQ=60)
       CTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTG                                                                                        >  SRR4302537.2174304/1‑94 (MQ=60)
       CTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTG                                                                                        >  SRR4302537.1523421/1‑94 (MQ=60)
       CTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTG                                                                                        <  SRR4302537.2856439/94‑1 (MQ=60)
        TACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGC                                                                                       >  SRR4302537.804701/1‑94 (MQ=60)
        TACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGC                                                                                       <  SRR4302537.5409796/94‑1 (MQ=60)
           GCGGAAACCCGCCGTCTGTATGGTAAAGAGCTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCC                                                                                    <  SRR4302537.3386521/94‑1 (MQ=60)
            CGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCT                                                                                   <  SRR4302537.2557448/94‑1 (MQ=60)
             GGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTG                                                                                  >  SRR4302537.3091982/1‑94 (MQ=60)
             GGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTG                                                                                  <  SRR4302537.5837359/94‑1 (MQ=60)
             GGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTG                                                                                  >  SRR4302537.5853015/1‑94 (MQ=60)
              GAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGC                                                                                 >  SRR4302537.1234230/1‑94 (MQ=60)
              GAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGC                                                                                 >  SRR4302537.2065052/1‑94 (MQ=60)
               AAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCG                                                                                >  SRR4302537.4365119/1‑94 (MQ=60)
                 ACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCG                                                                              >  SRR4302537.5562755/1‑94 (MQ=60)
                    CGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGCGCGCCTGCGCGCCA                                                                           >  SRR4302537.3584386/1‑94 (MQ=60)
                      CCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACG                                                                         >  SRR4302537.1475467/1‑94 (MQ=60)
                      CCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACG                                                                         <  SRR4302537.6404051/94‑1 (MQ=60)
                       CGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGG                                                                        >  SRR4302537.1554963/1‑94 (MQ=60)
                        GTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGT                                                                       >  SRR4302537.6485873/1‑94 (MQ=60)
                          CTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAA                                                                     >  SRR4302537.560949/1‑94 (MQ=60)
                          CTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAA                                                                     >  SRR4302537.2144338/1‑94 (MQ=60)
                          CTGTAGTGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAA                                                                     <  SRR4302537.3313021/94‑1 (MQ=60)
                           TGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAG                                                                    <  SRR4302537.2317263/94‑1 (MQ=60)
                           TGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAG                                                                    >  SRR4302537.3112475/1‑94 (MQ=60)
                           TGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAG                                                                    >  SRR4302537.1044934/1‑94 (MQ=60)
                            TTATGGTAAAGAGGTTTACTATGGCCCGTCGCGCTTTATCGTCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGC                                                                   <  SRR4302537.3681440/94‑1 (MQ=60)
                            GTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGC                                                                   <  SRR4302537.3404937/94‑1 (MQ=60)
                             TATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCC                                                                  >  SRR4302537.2420385/1‑94 (MQ=60)
                              ATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGCGGTGCGCCTGCGCGCCACGGTAAGACG                                                                 >  SRR4302537.3265434/1‑94 (MQ=60)
                              ATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCG                                                                 >  SRR4302537.1991047/1‑94 (MQ=60)
                              ATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCC                                                                 >  SRR4302537.1174435/1‑94 (MQ=60)
                               TGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGC                                                                >  SRR4302537.4983173/1‑94 (MQ=60)
                                GGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCC                                                               >  SRR4302537.3044422/1‑94 (MQ=60)
                                GGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCC                                                               >  SRR4302537.2579475/1‑94 (MQ=60)
                                 GTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCC                                                              <  SRR4302537.5152113/94‑1 (MQ=60)
                                 GTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCC                                                              <  SRR4302537.5152112/94‑1 (MQ=60)
                                 GTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCC                                                              >  SRR4302537.2851339/1‑94 (MQ=60)
                                  TAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCG                                                             >  SRR4302537.5494775/1‑94 (MQ=60)
                                  TAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCG                                                             <  SRR4302537.6391477/94‑1 (MQ=60)
                                  TAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCG                                                             <  SRR4302537.2998601/94‑1 (MQ=60)
                                      GAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCA                                                         >  SRR4302537.4259981/1‑94 (MQ=60)
                                      GAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCA                                                         <  SRR4302537.2737831/94‑1 (MQ=60)
                                       AGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAG                                                        >  SRR4302537.4318058/1‑94 (MQ=60)
                                       AGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAG                                                        >  SRR4302537.2403241/1‑94 (MQ=60)
                                          TTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCA                                                     >  SRR4302537.4241723/1‑94 (MQ=60)
                                             ACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCA                                                  >  SRR4302537.2386403/1‑94 (MQ=60)
                                              CCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAG                                                 >  SRR4302537.4745938/1‑94 (MQ=60)
                                              CCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAG                                                 <  SRR4302537.5149167/94‑1 (MQ=60)
                                              CCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAG                                                 <  SRR4302537.3971547/94‑1 (MQ=60)
                                               CATCGCCCGTCGCGCTTTATCGGCGCGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGC                                                >  SRR4302537.2625193/1‑94 (MQ=60)
                                               CATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGC                                                >  SRR4302537.5291690/1‑94 (MQ=60)
                                               CATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGGGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGC                                                >  SRR4302537.3851132/1‑94 (MQ=60)
                                               CATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGGGCGTGGGAGAGGTGCGCCTGCGCGGCACGGTAAGCCGCCCGGTCAGCCATCTGC                                                >  SRR4302537.6101940/1‑94 (MQ=60)
                                               CATCGCCCGTCGCGCTTGATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTACGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGC                                                <  SRR4302537.3978380/94‑1 (MQ=60)
                                                CTCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCG                                               <  SRR4302537.60774/94‑1 (MQ=60)
                                                ATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCG                                               <  SRR4302537.1861414/94‑1 (MQ=60)
                                                  CGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGAGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGA                                             >  SRR4302537.3041086/1‑94 (MQ=60)
                                                   GCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGAT                                            <  SRR4302537.1571893/94‑1 (MQ=60)
                                                   GCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCAGCCCGGTCAGCCATCAGCGGAT                                            >  SRR4302537.3888494/1‑94 (MQ=60)
                                                    CCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATG                                           >  SRR4302537.524184/1‑94 (MQ=60)
                                                     CCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTACGCCGCCCGGTCAGCCATCAGCGGATGG                                          >  SRR4302537.4978517/1‑94 (MQ=60)
                                                     CCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGG                                          <  SRR4302537.2854859/94‑1 (MQ=60)
                                                      CGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGG                                         >  SRR4302537.4849664/1‑94 (MQ=60)
                                                      CGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGG                                         >  SRR4302537.2602501/1‑94 (MQ=60)
                                                      CGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGG                                         >  SRR4302537.6081646/1‑94 (MQ=60)
                                                       GTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGT                                        >  SRR4302537.4670307/1‑94 (MQ=60)
                                                          GCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGGAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACG                                     >  SRR4302537.3447754/1‑94 (MQ=60)
                                                           CGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGC                                    >  SRR4302537.121509/1‑94 (MQ=60)
                                                           CGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGC                                    >  SRR4302537.2896332/1‑94 (MQ=60)
                                                            GCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCC                                   >  SRR4302537.2588865/1‑94 (MQ=60)
                                                            GCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCC                                   >  SRR4302537.5058632/1‑94 (MQ=60)
                                                            GCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCC                                   <  SRR4302537.5563018/94‑1 (MQ=60)
                                                             CTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGGGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCG                                  >  SRR4302537.4041738/1‑94 (MQ=60)
                                                               TTATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGAT                                <  SRR4302537.3544144/94‑1 (MQ=60)
                                                                TATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATG                               <  SRR4302537.4798253/94‑1 (MQ=60)
                                                                 ATCGGCGAGCTGCCGGAAGAGTGTGTGGGGGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGGAGGGCGATGG                              >  SRR4302537.3631500/1‑94 (MQ=60)
                                                                 ATCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGG                              >  SRR4302537.2339480/1‑94 (MQ=60)
                                                                  TCGGCGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGT                             <  SRR4302537.4837781/94‑1 (MQ=60)
                                                                      CGAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAG                         <  SRR4302537.5124815/94‑1 (MQ=60)
                                                                       GAGCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGA                        >  SRR4302537.4748108/1‑94 (MQ=60)
                                                                         GCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAC                      <  SRR4302537.5499637/94‑1 (MQ=60)
                                                                         GCTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAC                      <  SRR4302537.4374221/94‑1 (MQ=60)
                                                                          gtgcgGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACG                     <  SRR4302537.5535687/89‑1 (MQ=60)
                                                                          CTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACG                     <  SRR4302537.3359789/94‑1 (MQ=60)
                                                                          CTGCCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACG                     <  SRR4302537.2446650/94‑1 (MQ=60)
                                                                             CCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACA                  >  SRR4302537.1137789/1‑94 (MQ=60)
                                                                             CCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACA                  <  SRR4302537.1572169/94‑1 (MQ=60)
                                                                             CCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACA                  >  SRR4302537.398085/1‑94 (MQ=60)
                                                                             CCGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACA                  <  SRR4302537.5238384/94‑1 (MQ=60)
                                                                             CCGGAAGAGGGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACA                  >  SRR4302537.2809511/1‑94 (MQ=60)
                                                                              CGGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAG                 >  SRR4302537.2030530/1‑94 (MQ=60)
                                                                               GGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGC                >  SRR4302537.516685/1‑94 (MQ=60)
                                                                               GGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGC                <  SRR4302537.2682326/94‑1 (MQ=60)
                                                                               GGAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGC                >  SRR4302537.5630630/1‑94 (MQ=60)
                                                                                GAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCG               <  SRR4302537.4679834/94‑1 (MQ=60)
                                                                                GAAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCG               <  SRR4302537.2747965/94‑1 (MQ=60)
                                                                                 AAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGG              >  SRR4302537.2419158/1‑94 (MQ=60)
                                                                                 AAGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGG              <  SRR4302537.3622863/94‑1 (MQ=60)
                                                                                  AGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGC             >  SRR4302537.2411175/1‑94 (MQ=60)
                                                                                  AGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGC             >  SRR4302537.4596103/1‑94 (MQ=60)
                                                                                  AGAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAAAGAAAGCGGC             >  SRR4302537.3572892/1‑94 (MQ=60)
                                                                                   GAGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCT            <  SRR4302537.4679146/94‑1 (MQ=60)
                                                                                    AGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTA           >  SRR4302537.559654/1‑94 (MQ=60)
                                                                                    AGTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTA           <  SRR4302537.4450306/94‑1 (MQ=60)
                                                                                     GTGTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTAC          <  SRR4302537.663241/94‑1 (MQ=60)
                                                                                       GTGTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAA        >  SRR4302537.3492139/1‑94 (MQ=60)
                                                                                         GTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGC      >  SRR4302537.3673356/1‑94 (MQ=60)
                                                                                         GTGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGC      <  SRR4302537.5298611/94‑1 (MQ=60)
                                                                                          TGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCT     <  SRR4302537.5653325/94‑1 (MQ=60)
                                                                                          TGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCT     <  SRR4302537.3110353/94‑1 (MQ=60)
                                                                                          TGGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCT     <  SRR4302537.4545174/94‑1 (MQ=60)
                                                                                           GGGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTC    >  SRR4302537.547864/1‑94 (MQ=60)
                                                                                            GGAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCG   >  SRR4302537.1308636/1‑94 (MQ=60)
                                                                                             GAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGG  >  SRR4302537.2210839/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCTGACCTACGCGGAAACCCGCCGTCTGTATGGTAAAGAGGTTTACCATCGCCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGG  >  NC_000913/3997427‑3997613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑