Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,001,513 |
G→A |
A97V (GCG→GTG) |
rarD ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,001,513 | 0 | G | A | 96.9%
| 766.9
/ 3.2
| 222 | A97V (GCG→GTG) | rarD | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (4/3); new base A (112/103); total (116/106) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01 |
Only 100 of 233 total aligned reads displayed.
TCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTT > NC_000913/4001423‑4001602
|
tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCaccacc > 2:5655764/1‑93 (MQ=255)
ccGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGGTCACCACCCAg > 1:43078/1‑93 (MQ=255)
cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGa > 1:5315224/1‑93 (MQ=255)
cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGa < 1:3170868/93‑1 (MQ=255)
aaaaaaaaCCACCCCCACCAAATTCTCCCCCAGGGGTTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGAt < 2:5744807/89‑1 (MQ=255)
gAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATaaa > 1:5832194/1‑93 (MQ=255)
aaaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAAc < 1:1499820/93‑1 (MQ=255)
aaaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAAc > 2:5365777/1‑93 (MQ=255)
aaaaTCATCCCCAGCACAATGTGCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAAc < 2:2559608/93‑1 (MQ=255)
aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACa < 1:4338021/93‑1 (MQ=255)
aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAg > 2:3185486/1‑93 (MQ=255)
tcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTa < 2:3333366/93‑1 (MQ=255)
catcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAg > 2:50582/1‑93 (MQ=255)
ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCa < 1:5419896/93‑1 (MQ=255)
ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCa < 2:1155867/93‑1 (MQ=255)
ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCa > 1:130793/1‑93 (MQ=255)
ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGt > 2:2838614/1‑93 (MQ=255)
cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGtt < 1:2629472/93‑1 (MQ=255)
gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGc < 2:5842849/93‑1 (MQ=255)
gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGc > 2:5321016/1‑93 (MQ=255)
gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGc > 1:6152792/1‑93 (MQ=255)
cacaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcc < 2:3200189/93‑1 (MQ=255)
acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcca < 2:650583/93‑1 (MQ=255)
acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGcca > 2:2551982/1‑93 (MQ=255)
aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGccacc < 2:2801481/93‑1 (MQ=255)
tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCaa < 2:1849589/93‑1 (MQ=255)
ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATc < 2:106742/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 2:499868/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc > 1:3925006/1‑93 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 2:1413758/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc < 1:4053794/93‑1 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc > 2:3346091/1‑93 (MQ=255)
aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACAACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc > 2:4497458/1‑93 (MQ=255)
ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa > 1:6068902/1‑93 (MQ=255)
ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa > 1:1118527/1‑93 (MQ=255)
cAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAc > 2:2190488/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg < 1:1646583/93‑1 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg > 2:3435139/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg > 1:651330/1‑93 (MQ=255)
aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg < 1:6397310/93‑1 (MQ=255)
gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg < 1:4653769/93‑1 (MQ=255)
gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg > 2:314975/1‑93 (MQ=255)
gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg < 1:2117364/93‑1 (MQ=255)
ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag > 1:1885431/1‑93 (MQ=255)
ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag > 1:5520217/1‑93 (MQ=255)
taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga > 2:5265836/1‑93 (MQ=255)
taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga > 1:3479027/1‑93 (MQ=255)
aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc < 1:2961693/93‑1 (MQ=255)
aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTCTTCACCACCCAGATAAACAGTAGCCCGTTGCCACCCATCAGCACGGCAGAGAc > 2:4802029/1‑93 (MQ=255)
ataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACt > 1:2012291/1‑93 (MQ=255)
ataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACt < 2:6184515/93‑1 (MQ=255)
taaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTg > 2:3967014/1‑93 (MQ=255)
taaAGTAACCAAGGCTCGCTTCCAGCATATGGTAATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTg > 1:6308010/1‑93 (MQ=255)
aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc > 1:1793340/1‑93 (MQ=255)
gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg < 1:4907575/93‑1 (MQ=255)
tAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCCCTAATCAGCACGGCAGAGACTGCCAGc < 2:5075255/93‑1 (MQ=255)
tAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGc < 2:4341403/93‑1 (MQ=255)
aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa < 1:407364/93‑1 (MQ=255)
aCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAt > 1:3305332/1‑93 (MQ=255)
aCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGACAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAt > 1:5614878/1‑93 (MQ=255)
cAAGGCTCGTTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaa > 1:2430733/1‑93 (MQ=255)
cAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaa > 2:1514097/1‑93 (MQ=255)
aaGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaa > 1:4697446/1‑93 (MQ=255)
aGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa > 2:459803/1‑93 (MQ=255)
aGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa > 2:4437028/1‑93 (MQ=255)
ggCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaaa < 2:3715008/93‑1 (MQ=255)
tcgcttCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAttt > 2:810491/5‑93 (MQ=255)
cttCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCt > 1:2535675/2‑93 (MQ=255)
ttCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCtg > 2:3992089/1‑93 (MQ=255)
ccAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCtgtg > 1:2271459/1‑93 (MQ=255)
cAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTgg > 1:1341365/1‑93 (MQ=255)
cAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTgg < 2:587305/93‑1 (MQ=255)
aGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGc < 1:223560/93‑1 (MQ=255)
aGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGc < 1:2690022/93‑1 (MQ=255)
gCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCg > 2:1705528/1‑93 (MQ=255)
gCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCg > 2:5596627/1‑93 (MQ=255)
cATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGt > 1:733235/1‑93 (MQ=255)
tatGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCt > 1:4869582/1‑93 (MQ=255)
tGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGGATAAAAATTTTCTGTGGCGTCTGa > 2:6348250/1‑93 (MQ=255)
tGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATc < 1:103671/93‑1 (MQ=255)
gATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCa < 2:2720757/93‑1 (MQ=255)
gATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCa < 1:3234837/93‑1 (MQ=255)
gATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCa > 2:4621947/1‑93 (MQ=255)
aTTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAg > 1:3938456/1‑93 (MQ=255)
aTTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAg < 1:5791541/93‑1 (MQ=255)
aTTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAg > 2:4037348/1‑93 (MQ=255)
ttGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGc < 1:3055540/93‑1 (MQ=255)
ttGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGc > 2:4375313/1‑93 (MQ=255)
ttGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGc > 2:244436/1‑93 (MQ=255)
gTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGt < 1:6150751/93‑1 (MQ=255)
gTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGt < 2:2125861/93‑1 (MQ=255)
ttCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGtt < 1:5848216/93‑1 (MQ=255)
tCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGttt < 2:4306744/93‑1 (MQ=255)
tCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGttt < 1:4734780/93‑1 (MQ=255)
caccacCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGtttt > 1:4200233/1‑93 (MQ=255)
caccacCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGtttt > 1:3678061/1‑93 (MQ=255)
caccacCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGtttt < 2:1784237/93‑1 (MQ=255)
accaccCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTTGCGTCTGAATCAGCGttttt > 1:5057618/1‑93 (MQ=255)
accaccCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGttttt < 2:1567136/93‑1 (MQ=255)
accaccCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGttttt < 2:2034415/93‑1 (MQ=255)
|
TCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTT > NC_000913/4001423‑4001602
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAAT > NC_000913/4001422‑4001606
|
CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACC > SRR4302537.2958355/1‑94 (MQ=60)
CTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTAAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACC < SRR4302537.5759669/94‑1 (MQ=60)
CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCA > SRR4302537.1434461/1‑94 (MQ=60)
GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAG < SRR4302537.6224345/94‑1 (MQ=60)
GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGGTCACCACCCAG > SRR4302537.43402/1‑94 (MQ=60)
CCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGA > SRR4302537.5351725/1‑94 (MQ=60)
CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGAT < SRR4302537.3193145/94‑1 (MQ=60)
GAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATA > SRR4302537.572641/1‑94 (MQ=60)
GGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAA > SRR4302537.5872164/1‑94 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA < SRR4302537.4661930/94‑1 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA > SRR4302537.150147/1‑94 (MQ=60)
AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACA < SRR4302537.1510288/94‑1 (MQ=60)
AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAG < SRR4302537.4368130/94‑1 (MQ=60)
ATCATCCCCAGCACAATGTTCACCAGCGGGTTGATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTA > SRR4302537.4733764/1‑94 (MQ=60)
TCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGTTAAACAGTAG < SRR4302537.729380/94‑1 (MQ=60)
TCATCCCCAGCACAATGTTCACCAGCGGATTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAG < SRR4302537.4278599/94‑1 (MQ=60)
TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCA > SRR4302537.131718/1‑94 (MQ=60)
CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAG < SRR4302537.5456831/94‑1 (MQ=60)
CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCATGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGT > SRR4302537.6195053/1‑94 (MQ=60)
CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGT < SRR4302537.6378513/94‑1 (MQ=60)
CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTG < SRR4302537.2647884/94‑1 (MQ=60)
CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTG < SRR4302537.2165683/94‑1 (MQ=60)
AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGC > SRR4302537.3956497/1‑94 (MQ=60)
AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGC > SRR4302537.6195117/1‑94 (MQ=60)
CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCA > SRR4302537.2496867/1‑94 (MQ=60)
ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCAC > SRR4302537.3299557/1‑94 (MQ=60)
CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACC > SRR4302537.1999694/1‑94 (MQ=60)
CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACA > SRR4302537.3971938/1‑94 (MQ=60)
AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCA > SRR4302537.1752747/1‑94 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA > SRR4302537.4706667/1‑94 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA > SRR4302537.1340231/1‑94 (MQ=60)
ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAA < SRR4302537.5503503/94‑1 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT < SRR4302537.4290226/94‑1 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT > SRR4302537.5867719/1‑94 (MQ=60)
TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAAT < SRR4302537.2561463/94‑1 (MQ=60)
GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATC > SRR4302537.5879747/1‑94 (MQ=60)
TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAG < SRR4302537.5377601/94‑1 (MQ=60)
CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC > SRR4302537.3952427/1‑94 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA < SRR4302537.4082135/94‑1 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA > SRR4302537.6110599/1‑94 (MQ=60)
ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA > SRR4302537.1126268/1‑94 (MQ=60)
CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC < SRR4302537.2653050/94‑1 (MQ=60)
CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC > SRR4302537.5966569/1‑94 (MQ=60)
CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG > SRR4302537.655771/1‑94 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.1658117/94‑1 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.6440868/94‑1 (MQ=60)
AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG < SRR4302537.2104606/94‑1 (MQ=60)
GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC < SRR4302537.2132278/94‑1 (MQ=60)
GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC < SRR4302537.4685951/94‑1 (MQ=60)
CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA < SRR4302537.2196400/94‑1 (MQ=60)
GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA < SRR4302537.4876809/94‑1 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.1898541/1‑94 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.1876932/1‑94 (MQ=60)
GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG > SRR4302537.5557904/1‑94 (MQ=60)
TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA > SRR4302537.3503644/1‑94 (MQ=60)
TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA > SRR4302537.5036083/1‑94 (MQ=60)
AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT > SRR4302537.2026317/1‑94 (MQ=60)
AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT < SRR4302537.2982486/94‑1 (MQ=60)
ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTAATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG > SRR4302537.6351204/1‑94 (MQ=60)
TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGC < SRR4302537.6173814/94‑1 (MQ=60)
TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGC > SRR4302537.1805854/1‑94 (MQ=60)
AAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCC < SRR4302537.5739135/94‑1 (MQ=60)
AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA < SRR4302537.3515171/94‑1 (MQ=60)
AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG < SRR4302537.3208823/94‑1 (MQ=60)
GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC < SRR4302537.4941447/94‑1 (MQ=60)
GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC < SRR4302537.6275847/94‑1 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT < SRR4302537.410187/94‑1 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT > SRR4302537.3328699/1‑94 (MQ=60)
AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGACAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT > SRR4302537.5653268/1‑94 (MQ=60)
CCAAGGCTCGTTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA > SRR4302537.2447858/1‑94 (MQ=60)
CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA > SRR4302537.5611960/1‑94 (MQ=60)
CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA > SRR4302537.4729944/1‑94 (MQ=60)
AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA > SRR4302537.6461781/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.4495430/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.1284876/1‑94 (MQ=60)
AGGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA > SRR4302537.3478508/1‑94 (MQ=60)
GGCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT < SRR4302537.4048381/94‑1 (MQ=60)
GCTCGCTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAGT > SRR4302537.1600370/1‑94 (MQ=60)
tcgcTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTT < SRR4302537.2266517/90‑1 (MQ=60)
tcgcTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTT > SRR4302537.4093848/5‑94 (MQ=60)
cgcTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTC > SRR4302537.3013296/4‑94 (MQ=60)
gcTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCT < SRR4302537.4180687/92‑1 (MQ=60)
gcTTCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCT > SRR4302537.2553467/3‑94 (MQ=60)
TCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTTTG > SRR4302537.471100/1‑94 (MQ=60)
TCCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTG > SRR4302537.2287500/1‑94 (MQ=60)
TCCAGCATATGGTGATTGTACACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTG < SRR4302537.5248448/94‑1 (MQ=60)
CCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGG > SRR4302537.1350705/1‑94 (MQ=60)
CCAGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGG < SRR4302537.2977599/94‑1 (MQ=60)
AGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCG < SRR4302537.225152/94‑1 (MQ=60)
AGCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCG < SRR4302537.2708795/94‑1 (MQ=60)
GCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGT > SRR4302537.738239/1‑94 (MQ=60)
GCATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGT > SRR4302537.3256777/1‑94 (MQ=60)
CATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTC < SRR4302537.5353231/94‑1 (MQ=60)
ATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCT > SRR4302537.157459/1‑94 (MQ=60)
ATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCT > SRR4302537.4903188/1‑94 (MQ=60)
ATATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCT > SRR4302537.4337992/1‑94 (MQ=60)
TATGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTG > SRR4302537.2548874/1‑94 (MQ=60)
TGGTGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAA > SRR4302537.689672/1‑94 (MQ=60)
TGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCA < SRR4302537.6059063/94‑1 (MQ=60)
TGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCA < SRR4302537.104418/94‑1 (MQ=60)
TGATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCA < SRR4302537.1887830/94‑1 (MQ=60)
GATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAG > SRR4302537.3965992/1‑94 (MQ=60)
GATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAG < SRR4302537.3673730/94‑1 (MQ=60)
GATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAG < SRR4302537.3257637/94‑1 (MQ=60)
ATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGC < SRR4302537.4909771/94‑1 (MQ=60)
ATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGC < SRR4302537.5831249/94‑1 (MQ=60)
ATTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGC < SRR4302537.3350244/94‑1 (MQ=60)
ATAGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGC > SRR4302537.834983/1‑94 (MQ=60)
TTGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCG < SRR4302537.3076831/94‑1 (MQ=60)
TGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGT > SRR4302537.4935527/1‑94 (MQ=60)
TGTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGT > SRR4302537.1166719/1‑94 (MQ=60)
GTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTT < SRR4302537.2338357/94‑1 (MQ=60)
GTTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTT < SRR4302537.6193058/94‑1 (MQ=60)
TTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTT > SRR4302537.1078383/1‑94 (MQ=60)
TTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTT < SRR4302537.5888317/94‑1 (MQ=60)
TTCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTT < SRR4302537.3710538/94‑1 (MQ=60)
TCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTT < SRR4302537.4767496/94‑1 (MQ=60)
TCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTT > SRR4302537.4229560/1‑94 (MQ=60)
TCACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTT > SRR4302537.3703939/1‑94 (MQ=60)
CACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTTGCGTCTGAATCAGCGTTTTT > SRR4302537.5092433/1‑94 (MQ=60)
CACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTT < SRR4302537.3111690/94‑1 (MQ=60)
ACCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTA > SRR4302537.3653000/1‑94 (MQ=60)
CCACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAA > SRR4302537.5713098/1‑94 (MQ=60)
CACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAA < SRR4302537.1367566/94‑1 (MQ=60)
CCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAAT < SRR4302537.3307601/94‑1 (MQ=60)
ACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAAT < SRR4302537.2615868/94‑1 (MQ=60)
ACCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAAT > SRR4302537.850573/1‑94 (MQ=60)
|
GTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAAT > NC_000913/4001422‑4001606
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
