Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,375 |
+A |
coding (458/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,372 | 1 | . | A | 97.8%
| 311.6
/ ‑0.1
| 90 | coding (455/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base A (26/62); total (28/62) |
| Fisher's exact test for biased strand distribution p-value = 9.44e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑c < 2:252213/93‑1 (MQ=255)
cTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCG‑TTT‑C‑a > 2:5577129/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGGG‑TTT‑C‑aa > 1:6201883/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aa > 1:1283679/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aa < 1:325776/93‑1 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aa > 1:1601560/1‑93 (MQ=255)
ggAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCG‑GTT‑C‑taa > 1:5248414/1‑93 (MQ=255)
ggAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGGG‑GTT‑T‑aaa > 1:114835/1‑93 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaa < 1:391762/93‑2 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaa < 1:2014753/93‑2 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaag < 1:3931891/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaag < 1:4683262/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaag < 1:5744600/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaag < 2:3742176/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaag < 2:3003955/93‑3 (MQ=255)
gCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaaag > 1:2909389/1‑90 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaaggc < 2:451082/93‑5 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑aaaaggc < 1:2391440/93‑5 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCa < 1:1878958/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCa < 1:3031041/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCa < 1:4813643/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCa > 2:2059334/1‑93 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCa > 1:1033692/1‑93 (MQ=255)
cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATg < 1:5034599/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCGTTTT‑C‑AAAGGACATgc > 2:714485/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCCTgc > 1:4394075/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATgc < 1:5150630/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATgc < 1:4594068/93‑1 (MQ=255)
aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGGG‑TTT‑CAAAAGGCCATgcg > 1:4939633/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATgcgc > 2:5298825/1‑93 (MQ=255)
tAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCt < 2:5101314/93‑1 (MQ=255)
aCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTgg < 1:2626706/93‑1 (MQ=255)
aCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑GTT‑CAAAAGGCCATGCGCTgg > 2:3291426/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCG‑CTT‑CAAAAGGCCATGCACCGGaa > 1:1640919/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGGCATGCGCTGGaa > 1:5188540/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGaa > 1:5286512/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGaa < 1:3814488/93‑1 (MQ=255)
gCTCGCTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGaa < 1:4001244/93‑1 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAg > 1:5144113/1‑93 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAg < 1:3919203/93‑1 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑GTT‑CAAAAGGCCATGCGCTGGGAg > 2:5532678/1‑93 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTTCC‑AAAGGCCATGCGCTGGAAgcgg > 2:2939648/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcgg < 2:1805291/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcgg < 1:1262892/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcgg < 1:2491425/93‑4 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcggt < 1:1480317/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcggt < 2:5778199/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcggt < 2:4879671/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAgcggt < 1:5764122/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑GTT‑CAAAAGGGCATGCGCTGGAAgccgg > 2:5909070/1‑89 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGCGATGGCGGGCGGGCA‑TTC‑A‑AAATGCCCAGCGCTGGAAgcggg > 2:1920819/1‑89 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:491565/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 1:1280000/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:3722069/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:602061/93‑1 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTTCC‑AAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3484754/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:4351240/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:4787452/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:5387331/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:6281707/93‑3 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:1513701/93‑4 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:6443111/1‑90 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa < 2:3015233/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:3787930/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:5403718/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:869479/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:4486244/93‑1 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016825/1‑91 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016849/1‑91 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 2:464874/93‑3 (MQ=255)
gAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:3483846/93‑5 (MQ=255)
gAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:1252666/93‑5 (MQ=255)
gAAGTGATGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggg > 2:2507347/1‑89 (MQ=255)
aTGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 1:4940357/93‑1 (MQ=255)
tGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:6405431/93‑1 (MQ=255)
tGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa > 1:2083031/1‑93 (MQ=255)
tGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:1394688/93‑1 (MQ=255)
tGGCGGGC‑GGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:5796766/93‑1 (MQ=255)
ggcgggc‑gGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:303919/93‑1 (MQ=255)
ggcgggc‑gGCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:3310173/93‑1 (MQ=255)
cgggc‑ggCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGATGGGATGa > 1:4832777/1‑93 (MQ=255)
gggc‑ggCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3446146/93‑1 (MQ=255)
gggc‑ggCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3417995/93‑1 (MQ=255)
gggc‑ggCG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3173286/93‑1 (MQ=255)
ggc‑ggcG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:3439681/93‑1 (MQ=255)
ggc‑ggcG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:4031251/93‑1 (MQ=255)
ggc‑ggcG‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 1:6362609/1‑93 (MQ=255)
c‑ggcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:4625671/93‑1 (MQ=255)
c‑ggcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:1316320/93‑1 (MQ=255)
ggcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:1552969/93‑1 (MQ=255)
ggcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:763229/93‑1 (MQ=255)
ggcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:1044481/1‑93 (MQ=255)
gcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:4992638/1‑93 (MQ=255)
gcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:5946770/1‑93 (MQ=255)
gcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg < 2:4952602/93‑1 (MQ=255)
gcg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:6033668/1‑93 (MQ=255)
cg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:426660/93‑1 (MQ=255)
cg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:5168728/93‑1 (MQ=255)
cg‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 1:1552563/1‑93 (MQ=255)
g‑TTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:2256472/1‑93 (MQ=255)
|
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCG‑TTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008282‑4008458
|
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGCGG‑TT‑C‑TAA > SRR4302537.5284531/1‑94 (MQ=60)
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAA < SRR4302537.328034/94‑1 (MQ=60)
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAAG < SRR4302537.394474/94‑1 (MQ=60)
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAAG < SRR4302537.2028797/94‑1 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAagg < SRR4302537.3959365/94‑4 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAagg < SRR4302537.5783938/94‑4 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAagg < SRR4302537.4715657/94‑4 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAaag > SRR4302537.2929831/1‑91 (MQ=60)
CAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCC < SRR4302537.2408283/94‑1 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCA > SRR4302537.1040813/1‑94 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCAT < SRR4302537.3052175/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCAT < SRR4302537.1892028/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCAT < SRR4302537.4846870/94‑1 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCCTGC > SRR4302537.4424391/1‑94 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGC < SRR4302537.5069260/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGGGT‑TT‑CAAAAGGCCATGCG > SRR4302537.4973700/1‑94 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCG < SRR4302537.4625841/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCG < SRR4302537.5186123/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCG < SRR4302537.5103312/94‑1 (MQ=60)
ATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGACATGCGC > SRR4302537.279429/1‑94 (MQ=60)
ACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGA < SRR4302537.2645107/94‑1 (MQ=60)
CGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGCGC‑TT‑CAAAAGGCCATGCACCGGAA > SRR4302537.1652413/1‑94 (MQ=60)
CGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGGCATGCGCTGGAA > SRR4302537.5224228/1‑94 (MQ=60)
CGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAA > SRR4302537.5322857/1‑94 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG > SRR4302537.5179561/1‑94 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.3841236/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.4142728/94‑1 (MQ=60)
GCTCGCTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.4029254/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG‑C < SRR4302537.3946598/94‑1 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggt < SRR4302537.1271676/94‑5 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggt < SRR4302537.2508968/94‑5 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.6087171/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.5803605/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.1490613/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg > SRR4302537.2704659/1‑89 (MQ=60)
TGGGTCGATCCCGTCACCGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtgg < SRR4302537.3991379/94‑7 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAAGCCATGCGCTGGAAGcggtgg > SRR4302537.287458/1‑88 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGGGATGGCGGGCGGCGT‑TT‑CAAAAAGCCATGCGCTGGAAGcggtgg > SRR4302537.443011/1‑88 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggc < SRR4302537.5398099/94‑8 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A < SRR4302537.2532390/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaag < SRR4302537.1288898/94‑12 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TTCC‑AAAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302537.3509404/1‑82 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaa < SRR4302537.4820499/94‑14 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaa < SRR4302537.5424149/94‑14 (MQ=60)
TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaa < SRR4302537.1524278/94‑15 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302537.700335/1‑79 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302537.3817708/1‑78 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302537.3684524/1‑78 (MQ=60)
CCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302537.2000550/94‑17 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg < SRR4302537.3447830/94‑18 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg > SRR4302537.3928079/1‑77 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTGTT‑A‑AAAGGCCCTGCGCTGGAAGccgaggcgaagaaacttg > SRR4302537.1043540/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302537.854938/94‑19 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaataaactgggc > SRR4302537.578033/1‑74 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggc > SRR4302537.1980586/1‑74 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac > SRR4302537.1547540/1‑71 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac > SRR4302537.1274152/1‑71 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac < SRR4302537.4621664/94‑24 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaaatggggtac > SRR4302537.5469459/1‑71 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca > SRR4302537.637397/1‑70 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302537.5210878/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302537.468568/94‑25 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.525832/94‑26 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.5686799/94‑26 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGCGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.4997260/94‑26 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagc < SRR4302537.4800755/94‑27 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc < SRR4302537.6009115/94‑28 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302537.1356459/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302537.2129974/94‑30 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302537.1151205/94‑30 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302537.455523/1‑65 (MQ=60)
TTCTCTACCTTAAGCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302537.3509991/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302537.1773786/1‑64 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.2584034/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.5782919/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.5438353/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.2344182/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCCGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.4908916/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagg > SRR4302537.1559850/1‑61 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCCGGAAGcgttggggaaggaactgggatacaggccacagg > SRR4302537.1848238/1‑61 (MQ=60)
CTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagga < SRR4302537.5742409/94‑35 (MQ=60)
TACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302537.219447/94‑36 (MQ=60)
TACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302537.4547370/94‑36 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302537.5484448/94‑37 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302537.1553926/94‑37 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcggagaaactgggctacagcctggaggcttg > SRR4302537.1673369/1‑57 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302537.5912726/94‑39 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt > SRR4302537.2296096/1‑56 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302537.2472826/94‑40 (MQ=60)
TAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcccgaaggattgtat > SRR4302537.2068036/1‑54 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt < SRR4302537.358827/94‑42 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt > SRR4302537.936810/1‑53 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt < SRR4302537.526429/94‑42 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaataaactgggctacagcctgaaggattgtattg > SRR4302537.141779/1‑52 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302537.5767085/94‑43 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302537.2868672/1‑50 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302537.10583/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302537.136086/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302537.284497/1‑50 (MQ=60)
TCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302537.4517280/94‑48 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcctgaaggattgtattgcgtttg > SRR4302537.6259560/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302537.6058163/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302537.6058187/1‑46 (MQ=60)
GGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggt < SRR4302537.3530998/94‑51 (MQ=60)
GAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtg > SRR4302537.4986676/1‑43 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.2549128/94‑56 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.5158852/94‑56 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.1585102/94‑56 (MQ=60)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302537.6076720/3‑94 (MQ=18)
AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC < SRR4302537.5964645/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302537.3816140/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.83144/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.2469257/1‑94 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302537.3086211/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.6139961/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.1128719/94‑1 (MQ=23)
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TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008282‑4008458
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
