Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,391 |
+C |
coding (474/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,391 | 1 | . | C | 100.0%
| 243.0
/ NA
| 71 | K158N (AAG→AAC) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (24/47); total (24/47) |
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008300‑4008457
|
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAg < 1:3919203/93‑1 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAg > 1:5144113/1‑93 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATGCGCTGGGAg > 2:5532678/1‑93 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTTCC‑AAAGGCCATGCGCTGGAAgcgg > 2:2939648/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg < 1:1262892/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg < 2:1805291/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg < 1:2491425/93‑4 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt < 2:4879671/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt < 1:1480317/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt < 2:5778199/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt < 1:6045651/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt < 1:5764122/93‑5 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGGCATGCGCTGGAAgccgg > 2:5909070/1‑89 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGCGATGGCGGGCGGGCATTC‑A‑AAATGCCCAGCGCTGGAAgcggg > 2:1920819/1‑89 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:491565/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:3722069/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:602061/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:916174/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 1:1280000/93‑1 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTTCC‑AAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3484754/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:4787452/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:4351240/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:6281707/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:5387331/93‑3 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:1513701/93‑4 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:6443111/1‑90 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa < 2:3015233/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:5403718/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:2774904/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:3787930/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:869479/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:4486244/93‑1 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016849/1‑91 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 2:464874/93‑3 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 2:6138832/1‑91 (MQ=255)
tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016825/1‑91 (MQ=255)
ggAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 2:3320361/1‑90 (MQ=255)
ggAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg < 1:3506191/93‑4 (MQ=255)
gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:1252666/93‑5 (MQ=255)
gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:3483846/93‑5 (MQ=255)
gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:4040145/93‑5 (MQ=255)
gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggg > 2:2507347/1‑89 (MQ=255)
aTGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 1:4940357/93‑1 (MQ=255)
tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:1394688/93‑1 (MQ=255)
tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa > 1:2083031/1‑93 (MQ=255)
tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:6405431/93‑1 (MQ=255)
tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:5796766/93‑1 (MQ=255)
ggcgggc‑gGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:303919/93‑1 (MQ=255)
ggcgggc‑gGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:3310173/93‑1 (MQ=255)
cgggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGATGGGATGa > 1:4832777/1‑93 (MQ=255)
cgggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 2:5573378/93‑1 (MQ=255)
gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3417995/93‑1 (MQ=255)
gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3173286/93‑1 (MQ=255)
gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3446146/93‑1 (MQ=255)
gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:4711400/93‑1 (MQ=255)
ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:4031251/93‑1 (MQ=255)
ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:3439681/93‑1 (MQ=255)
ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 1:6362609/1‑93 (MQ=255)
c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:1316320/93‑1 (MQ=255)
c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:4625671/93‑1 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:1044481/1‑93 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:763229/93‑1 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:1552969/93‑1 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:1426432/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:5946770/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:6033668/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg < 2:4952602/93‑1 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:4992638/1‑93 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:426660/93‑1 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:5168728/93‑1 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:4958176/93‑1 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 1:1552563/1‑93 (MQ=255)
gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:2256472/1‑93 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa < 1:6062415/89‑1 (MQ=255)
tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 2:5083323/4‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaag < 2:2846134/92‑2 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:4617817/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:6035252/2‑93 (MQ=255)
aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg < 1:5923994/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 2:5226036/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 2:1736980/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 1:3789541/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:2452004/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:82540/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:6098058/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:1120950/93‑1 (MQ=255)
|
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008300‑4008457
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT > NC_000913/4008299‑4008459
|
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG > SRR4302537.5179561/1‑94 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.4142728/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.3841236/94‑1 (MQ=60)
GCTCGCTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG < SRR4302537.4029254/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAG‑C < SRR4302537.3946598/94‑1 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggt < SRR4302537.1271676/94‑5 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggt < SRR4302537.2508968/94‑5 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.1490613/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.5803605/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg < SRR4302537.6087171/94‑6 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtg > SRR4302537.2704659/1‑89 (MQ=60)
TGGGTCGATCCCGTCACCGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtgg < SRR4302537.3991379/94‑7 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAAGCCATGCGCTGGAAGcggtgg > SRR4302537.287458/1‑88 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGGGATGGCGGGCGGCGT‑TT‑CAAAAAGCCATGCGCTGGAAGcggtgg > SRR4302537.443011/1‑88 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggc < SRR4302537.5398099/94‑8 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A < SRR4302537.2532390/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaag < SRR4302537.1288898/94‑12 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TTCC‑AAAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302537.3509404/1‑82 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaa < SRR4302537.4820499/94‑14 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaa < SRR4302537.5424149/94‑14 (MQ=60)
TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaa < SRR4302537.1524278/94‑15 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302537.700335/1‑79 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302537.3684524/1‑78 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302537.3817708/1‑78 (MQ=60)
CCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302537.2000550/94‑17 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg > SRR4302537.3928079/1‑77 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg < SRR4302537.3447830/94‑18 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTGTT‑A‑AAAGGCCCTGCGCTGGAAGccgaggcgaagaaacttg > SRR4302537.1043540/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302537.854938/94‑19 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaataaactgggc > SRR4302537.578033/1‑74 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggc > SRR4302537.1980586/1‑74 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac > SRR4302537.1274152/1‑71 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac > SRR4302537.1547540/1‑71 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctac < SRR4302537.4621664/94‑24 (MQ=60)
CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaaatggggtac > SRR4302537.5469459/1‑71 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302537.5210878/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca > SRR4302537.637397/1‑70 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302537.468568/94‑25 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.525832/94‑26 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.5686799/94‑26 (MQ=60)
TCAGTTTCTCTACCTTAACCTGTCTGGAAGCGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302537.4997260/94‑26 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagc < SRR4302537.4800755/94‑27 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc < SRR4302537.6009115/94‑28 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302537.1356459/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302537.455523/1‑65 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302537.2129974/94‑30 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302537.1151205/94‑30 (MQ=60)
TTCTCTACCTTAAGCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302537.3509991/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302537.1773786/1‑64 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.2344182/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.2584034/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.5782919/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.5438353/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCCGCGG‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302537.4908916/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagg > SRR4302537.1559850/1‑61 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCCGGAAGcgttggggaaggaactgggatacaggccacagg > SRR4302537.1848238/1‑61 (MQ=60)
CTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagga < SRR4302537.5742409/94‑35 (MQ=60)
TACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302537.219447/94‑36 (MQ=60)
TACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302537.4547370/94‑36 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302537.1553926/94‑37 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302537.5484448/94‑37 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcggagaaactgggctacagcctggaggcttg > SRR4302537.1673369/1‑57 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302537.5912726/94‑39 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt > SRR4302537.2296096/1‑56 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302537.2472826/94‑40 (MQ=60)
TAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcccgaaggattgtat > SRR4302537.2068036/1‑54 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt > SRR4302537.936810/1‑53 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt < SRR4302537.526429/94‑42 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt < SRR4302537.358827/94‑42 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaataaactgggctacagcctgaaggattgtattg > SRR4302537.141779/1‑52 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302537.5767085/94‑43 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302537.10583/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302537.136086/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302537.2868672/1‑50 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302537.284497/1‑50 (MQ=60)
TCTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302537.4517280/94‑48 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcctgaaggattgtattgcgtttg > SRR4302537.6259560/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302537.6058163/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302537.6058187/1‑46 (MQ=60)
GGAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggt < SRR4302537.3530998/94‑51 (MQ=60)
GAAGTGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtg > SRR4302537.4986676/1‑43 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.5158852/94‑56 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.1585102/94‑56 (MQ=60)
TGATGGCGGGCGGCGT‑TT‑CAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg < SRR4302537.2549128/94‑56 (MQ=60)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302537.6076720/3‑94 (MQ=18)
AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC < SRR4302537.5964645/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.2469257/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.83144/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302537.3816140/94‑1 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.6139961/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302537.3086211/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.1128719/94‑1 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT > SRR4302537.6155501/1‑94 (MQ=25)
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GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGT‑TT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT > NC_000913/4008299‑4008459
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
