Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,469 |
+G |
intergenic (+36/‑197) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,466 | 1 | . | G | 99.1%
| 388.5
/ ‑3.4
| 112 | intergenic (+33/‑200) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (48/63); total (49/63) |
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 |
Only 100 of 117 total aligned reads displayed.
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008399‑4008551
|
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATggg < 1:5532678/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATggg < 2:3150136/89‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGc > 1:1890430/4‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa < 2:2266755/91‑1 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa > 2:2729629/3‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGTAAG‑G‑CTGCATTATGGGCa > 1:3112540/3‑93 (MQ=255)
cgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa < 2:2410320/91‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAg < 2:2017840/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAg < 2:1036539/92‑1 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGGGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTg < 2:691933/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgc < 2:2123975/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgcg > 2:3052832/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCATTGCgcacc > 2:5326394/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCgcacc > 1:6135998/3‑93 (MQ=255)
ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCgcacca > 2:1803524/2‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:3898226/1‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:4671677/1‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:6200664/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGTCGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 1:6138832/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 2:784195/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 1:1167811/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCAAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 2:1938210/1‑93 (MQ=255)
aaGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑GTCTGCATTATGGGCAGTGCGCACCAGCGt < 2:5376927/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGACCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 1:3584364/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 2:2935009/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 2:1668919/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:3696911/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:5015919/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt < 2:2787822/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 1:5150124/1‑93 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 1:1939591/89‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGCCCTTCATc < 2:3220522/90‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTGATc < 1:59782/90‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc < 1:3439497/90‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATc > 1:3443976/4‑93 (MQ=255)
ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcac < 2:2909389/92‑3 (MQ=255)
gtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg > 2:3310798/1‑93 (MQ=255)
gtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg < 1:1059991/93‑1 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa < 2:1678212/93‑1 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 1:5635787/1‑93 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 1:2197154/1‑93 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 2:4150517/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc > 1:2811962/1‑93 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g < 1:3819067/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 2:1853208/1‑93 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:1105597/1‑92 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 1:654256/1‑91 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa > 1:5537145/1‑90 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag > 1:6113177/1‑89 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:473043/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:3137370/1‑93 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt < 2:3317118/93‑1 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt > 2:717963/1‑93 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt < 2:4102738/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:714485/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 1:3588274/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 2:5589375/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 1:3298527/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 2:1265353/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 1:5843186/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 1:6032768/1‑93 (MQ=255)
cgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg < 2:4207724/93‑1 (MQ=255)
cgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg < 1:3340308/93‑1 (MQ=255)
cgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGAGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg < 2:4829334/93‑1 (MQ=255)
gCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt < 2:2103474/93‑1 (MQ=255)
ccGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa < 2:3900808/93‑1 (MQ=255)
ccGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa < 2:4399691/93‑1 (MQ=255)
ccGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa > 2:4265065/1‑93 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc < 2:4015445/93‑1 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc > 2:4816182/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:5430103/1‑93 (MQ=255)
gAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:626261/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 1:5522103/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:4143029/93‑1 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:3791101/93‑1 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 1:1349698/93‑1 (MQ=255)
aTGCTGTCGATGGC‑GGGT‑AAAGG‑CTGCATTATGCTCAGTGCGCGCCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:403609/93‑1 (MQ=255)
tGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg < 2:4883318/93‑1 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc > 1:4775320/1‑93 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCCGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGCAGTGATTGGTACTAATGcc > 2:4186594/1‑93 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:3065859/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:2300294/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 2:3471966/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 2:2685914/93‑1 (MQ=255)
tGTCGATGGCGGGG‑‑AAATG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:3879453/1‑93 (MQ=255)
gTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga > 1:6323054/1‑93 (MQ=255)
gTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:5365906/93‑1 (MQ=255)
gTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 2:3138602/93‑1 (MQ=255)
tCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac < 1:17518/93‑1 (MQ=255)
tCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 1:4576511/1‑93 (MQ=255)
cGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAACACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg < 1:3458305/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 1:3291426/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 1:5805622/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 1:5226036/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga > 1:4114416/1‑93 (MQ=255)
aTGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 2:1999572/1‑93 (MQ=255)
aTGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 2:5248414/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 1:4396967/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 1:431637/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAAACCTTCATCCCGAGCTGGAGGTGATTGGGACTAATGCCgaggac > 2:1363924/1‑93 (MQ=255)
|
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008399‑4008551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008381‑4008559
|
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6491540/71‑1 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6075178/71‑1 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6491541/71‑1 (MQ=57)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA < SRR4302537.2289760/73‑1 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA > SRR4302537.2918606/22‑94 (MQ=56)
ggaagcggtggcgaagaaactgggctacagcctgaagtattgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑G < SRR4302537.4192745/41‑1 (MQ=60)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA < SRR4302537.3465938/74‑1 (MQ=55)
agcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA > SRR4302537.6220179/20‑94 (MQ=54)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G < SRR4302537.3515312/76‑1 (MQ=53)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G > SRR4302537.219749/19‑94 (MQ=53)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G < SRR4302537.706654/76‑1 (MQ=53)
cggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaagg < SRR4302537.3353664/77‑7 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302537.1843874/17‑87 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc < SRR4302537.2329728/78‑8 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302537.3442692/17‑87 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct > SRR4302537.5735591/16‑86 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302537.5497392/79‑9 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct > SRR4302537.2380942/16‑86 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302537.775492/79‑9 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctg < SRR4302537.995395/80‑10 (MQ=57)
ggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctgc < SRR4302537.5215171/81‑11 (MQ=57)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCAT > SRR4302537.2087440/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302537.923093/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302537.1498215/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302537.5536242/11‑94 (MQ=49)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACTCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTA > SRR4302537.1611067/10‑94 (MQ=37)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTA < SRR4302537.874927/85‑1 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTAT > SRR4302537.3877400/9‑94 (MQ=48)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATG < SRR4302537.6080847/87‑1 (MQ=49)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATG > SRR4302537.5945483/8‑94 (MQ=49)
aaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGG < SRR4302537.2985492/88‑1 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGG < SRR4302537.2846596/94‑1 (MQ=50)
AACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGG < SRR4302537.5909300/94‑1 (MQ=50)
ACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302537.1903568/1‑94 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGC < SRR4302537.5570442/94‑1 (MQ=53)
ctgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGTAAG‑GCTGCATTATGGGCA > SRR4302537.3134280/4‑94 (MQ=57)
CTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg < SRR4302537.3544116/94‑3 (MQ=60)
ACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgca < SRR4302537.2416802/94‑5 (MQ=60)
ACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgca > SRR4302537.2174283/1‑90 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC < SRR4302537.736139/91‑1 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302537.6178180/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC < SRR4302537.6354651/91‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG < SRR4302537.2539279/94‑1 (MQ=60)
CTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302537.3313670/1‑94 (MQ=60)
cctgaaggattgtattgcgcttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGGATTATAGGCAGTGCGCACCAG > SRR4302537.277339/24‑94 (MQ=43)
TGAAGGATTGTATTGCG‑‑TTTGGTGTCGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302537.6181042/94‑1 (MQ=46)
TGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302537.1175932/94‑1 (MQ=57)
AGGATTGTATTGCG‑‑TTTGGTGACGGGATGACCGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302537.3609632/94‑1 (MQ=46)
AGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT > SRR4302537.5185612/1‑94 (MQ=57)
GGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG > SRR4302537.5500461/1‑94 (MQ=60)
GATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCAGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA > SRR4302537.3486948/1‑94 (MQ=50)
TTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA < SRR4302537.5184688/94‑1 (MQ=60)
TTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA > SRR4302537.6207917/1‑94 (MQ=60)
T‑ATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302537.2462065/1‑94 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGAGCACCAGCGTCTGCAAG > SRR4302537.3745278/14‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAACTGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGAGCGCACCAGCGGCTGAAAGA > SRR4302537.1818192/13‑94 (MQ=43)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA < SRR4302537.5527901/82‑1 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA > SRR4302537.2274258/13‑94 (MQ=60)
ATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC < SRR4302537.5515130/94‑1 (MQ=60)
TTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302537.3596407/94‑1 (MQ=60)
TTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302537.5370563/94‑1 (MQ=60)
TGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302537.2446177/94‑1 (MQ=60)
GCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC < SRR4302537.3933834/94‑1 (MQ=60)
GCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC < SRR4302537.3785303/94‑1 (MQ=60)
GCG‑‑TTGGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC < SRR4302537.5602715/94‑1 (MQ=60)
CG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302537.4124383/1‑94 (MQ=60)
CG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA < SRR4302537.1622734/94‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302537.4320795/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302537.2336684/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGCCAGTGCGCACCAGCGTCTGAAAGACCTTCAT > SRR4302537.2164213/6‑94 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATC < SRR4302537.1953081/90‑1 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATC > SRR4302537.3468341/5‑94 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302537.5524195/94‑1 (MQ=60)
ttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTGATCC < SRR4302537.60224/91‑1 (MQ=60)
ttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCC < SRR4302537.3463838/91‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA < SRR4302537.1067300/94‑1 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG > SRR4302537.2212634/1‑94 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG > SRR4302537.5674355/1‑94 (MQ=60)
GACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC > SRR4302537.2831627/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG < SRR4302537.3845848/94‑1 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GGA > SRR4302537.658712/1‑94 (MQ=60)
GATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaa > SRR4302537.5574944/1‑91 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG > SRR4302537.6155189/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA > SRR4302537.3159390/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302537.4376074/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302537.719372/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG > SRR4302537.6074221/1‑94 (MQ=60)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302537.3321848/94‑1 (MQ=60)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302537.3613569/94‑1 (MQ=60)
ACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302537.5883250/94‑1 (MQ=60)
CGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGT < SRR4302537.3363951/94‑1 (MQ=60)
GCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTA > SRR4302537.6418411/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302537.5559802/1‑94 (MQ=60)
ATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG < SRR4302537.5904307/94‑1 (MQ=60)
ATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG < SRR4302537.1359103/94‑1 (MQ=60)
TGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC > SRR4302537.4808287/1‑94 (MQ=60)
CTGTCGATGGC‑GGGGAAAT‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302537.3906584/1‑94 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302537.3087222/94‑1 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302537.2316531/94‑1 (MQ=60)
TGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGA > SRR4302537.6366314/1‑94 (MQ=60)
GTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302537.5402623/94‑1 (MQ=60)
GTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC > SRR4302537.4608183/1‑94 (MQ=60)
TCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACG < SRR4302537.17657/94‑1 (MQ=60)
CGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA > SRR4302537.4143157/1‑94 (MQ=60)
CGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAACACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA < SRR4302537.3482756/94‑1 (MQ=60)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302537.5261978/94‑1 (MQ=60)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302537.3314682/94‑1 (MQ=60)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302537.5845431/94‑1 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302537.4427305/94‑1 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302537.434646/94‑1 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302537.3831549/1‑94 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302537.5798356/1‑94 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302537.2197616/1‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302537.4649800/94‑1 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302537.408327/94‑1 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > SRR4302537.764196/1‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > SRR4302537.1640581/1‑94 (MQ=60)
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TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008381‑4008559
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
