Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,144 |
Δ1 bp |
intergenic (+146/+305) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,143 | 0 | C | . | 99.5%
| 725.9
/ ‑3.4
| 211 | intergenic (+145/+306) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (105/105); minor base T (0/1); total (105/106) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 233 total aligned reads displayed.
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGG‑CG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051051‑4051230
|
gCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc < 1:3660313/93‑1 (MQ=255)
gCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGc < 2:4316937/93‑1 (MQ=255)
gCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGc < 1:2055392/93‑1 (MQ=255)
cTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGca > 2:135480/1‑92 (MQ=255)
agaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGcatct < 1:2493838/93‑5 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 2:4206117/93‑1 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 1:2348861/93‑1 (MQ=255)
aaCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGa < 1:5508255/93‑1 (MQ=255)
aCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAg < 1:1083070/93‑1 (MQ=255)
aCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAg > 1:3553521/1‑93 (MQ=255)
cAAGATTGCCTGATGCGCTGGGCCACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGACGTTTACGCCGCATCAGG‑CATCTGAGc > 1:4175172/1‑93 (MQ=37)
cAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGc < 2:1928625/93‑1 (MQ=255)
aaGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCa < 2:4402323/93‑1 (MQ=255)
aaGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCa < 2:4680616/93‑1 (MQ=255)
aGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCat < 2:859491/93‑1 (MQ=255)
gATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatg > 2:1486852/1‑93 (MQ=255)
aTTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatga < 1:4443199/93‑1 (MQ=255)
aTTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatga < 1:2391583/93‑1 (MQ=255)
ttGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatgat < 2:5683881/93‑1 (MQ=255)
ttGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatgat > 2:6295390/1‑93 (MQ=255)
gCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGc < 2:5405923/93‑1 (MQ=255)
gCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGc > 2:3068036/1‑93 (MQ=255)
gCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGc > 2:1592008/1‑93 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGGCGCATCAGG‑CATCTGAGCATGATGcc > 1:4665354/1‑93 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGcc < 1:2632625/93‑1 (MQ=255)
cTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCt > 1:4353078/1‑93 (MQ=255)
tGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTg < 2:2651570/93‑1 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa < 1:760595/93‑1 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa < 1:3387882/93‑1 (MQ=255)
aTGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAt < 1:4393624/93‑1 (MQ=255)
aTGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGAt > 1:1387392/1‑93 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg < 2:4142906/93‑1 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg > 1:6389419/1‑93 (MQ=255)
tGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATg < 2:3184501/93‑1 (MQ=255)
gcgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgc < 2:5961421/93‑1 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg > 2:3701849/1‑93 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgct < 1:2731334/93‑3 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgct > 2:1176426/1‑91 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgctg < 1:5074338/93‑4 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgctg > 1:1551140/1‑90 (MQ=255)
gCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgctg < 1:4534778/93‑4 (MQ=255)
caacaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgctgg < 2:4790228/93‑5 (MQ=255)
caacaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg‑cgctgg > 2:2791242/1‑89 (MQ=255)
acaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTc > 1:3470680/1‑93 (MQ=21)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTcgc > 1:1960704/1‑93 (MQ=25)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTcgc > 2:6126465/1‑93 (MQ=25)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTc > 1:3803776/1‑93 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTCGTCGCGTc < 2:6368824/93‑1 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGGAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTc < 2:2358991/93‑1 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCt > 2:3541125/1‑93 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTa < 2:3473267/93‑1 (MQ=21)
gTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTAt > 1:5418450/1‑93 (MQ=21)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAg > 1:58305/1‑93 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAg < 2:5573281/93‑1 (MQ=21)
aaaTTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAgg > 1:1001991/1‑93 (MQ=18)
aaTTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGc < 2:6086163/93‑1 (MQ=18)
aaTTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGc < 2:3238162/93‑1 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGcc < 2:5064005/93‑1 (MQ=18)
tattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTa > 1:6185876/1‑93 (MQ=18)
tattGCTTTTGTAGACCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTa < 2:6330093/93‑1 (MQ=17)
tattGCTTTGGTAGGCGGAATAGGGCTTTTACGCCGCATCAGG‑CATCTGAGCATGATGCTTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTa < 2:4489184/93‑1 (MQ=17)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTAc > 1:2325444/1‑93 (MQ=17)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTAc > 2:4539957/1‑93 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTAc > 1:2609532/1‑93 (MQ=18)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACg > 1:5210476/1‑93 (MQ=17)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACg < 1:5617075/93‑1 (MQ=18)
tGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGa < 2:4955811/93‑1 (MQ=18)
tcTTTTGTAGGCCGGGTAAAGCGTTTACGCCGCATCAGG‑GATCTGAGCATGATGCCTGATGCGG‑CGCCGGGCGCGGCCTTTTAGGGCTACGAc > 2:5191953/2‑93 (MQ=12)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGAc < 1:5876528/93‑1 (MQ=18)
cTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACt > 1:998397/1‑93 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:3993795/1‑93 (MQ=18)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGGTGCGG‑CGCTGGTCGCGTCTTATCAGCCCTACGACTTtctc > 2:3942741/1‑93 (MQ=18)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTtctc < 2:2146294/93‑1 (MQ=18)
aGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTGCg > 1:3936722/1‑93 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCCC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGc > 2:3356834/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:3275893/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc < 2:5463121/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:669055/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc > 1:592396/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGACTACGACTTTCTCCGCATCCGGc > 2:3911463/1‑93 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 2:3582546/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 1:2444023/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 1:1693558/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 2:2214815/93‑1 (MQ=18)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 2:4870028/1‑93 (MQ=21)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 1:4044847/1‑93 (MQ=21)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 2:5293885/1‑93 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAcaca > 2:2136076/1‑93 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:1109259/1‑93 (MQ=25)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 1:1271136/93‑1 (MQ=25)
aCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACg > 1:1909102/1‑93 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 2:2946021/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 1:4874787/93‑1 (MQ=25)
ccgcATCAGG‑CATCTGAGCATGATGCGTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc < 2:2670508/93‑1 (MQ=25)
cgcATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCt < 2:1045467/93‑1 (MQ=25)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:1310176/1‑93 (MQ=25)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt < 2:703783/93‑1 (MQ=25)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa > 2:1764552/1‑93 (MQ=37)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa > 2:4564676/1‑93 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGG‑CGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg > 1:2963043/1‑93 (MQ=37)
|
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGG‑CG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051051‑4051230
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA > NC_000913/4051051‑4051235
|
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCA < SRR4302537.2069818/94‑1 (MQ=60)
GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCT < SRR4302537.2418178/94‑1 (MQ=60)
GAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCT < SRR4302537.4131253/94‑1 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG > SRR4302537.1212740/1‑94 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG < SRR4302537.2511398/94‑1 (MQ=60)
GACCAAGATTGCCTGATGCGCTGGGCAACAAAGCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302537.5851434/94‑1 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302537.2365399/94‑1 (MQ=60)
AACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAG < SRR4302537.5545874/94‑1 (MQ=60)
AACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAG > SRR4302537.3578609/1‑94 (MQ=60)
ACAAGATTGCCTGATGCGCTGGGCCACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGACGTTTACGCCGCATCAGG‑CATCTGAGC > SRR4302537.4204323/1‑94 (MQ=60)
ACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGC < SRR4302537.1090545/94‑1 (MQ=60)
ACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGC < SRR4302537.3148745/94‑1 (MQ=60)
CAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCA < SRR4302537.2478139/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302537.1677296/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302537.4457882/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302537.4473887/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302537.4244771/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302537.2408427/94‑1 (MQ=60)
TGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGC > SRR4302537.4533293/1‑94 (MQ=60)
GCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGGCGCATCAGG‑CATCTGAGCATGATGCC > SRR4302537.4697633/1‑94 (MQ=60)
GCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCC < SRR4302537.2636846/94‑1 (MQ=60)
GCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCC < SRR4302537.1328317/94‑1 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT < SRR4302537.2651054/94‑1 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT > SRR4302537.4383223/1‑94 (MQ=60)
CTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTG > SRR4302537.1362160/1‑94 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302537.3411881/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302537.765794/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302537.5147633/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302537.2128049/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGAT > SRR4302537.1397066/1‑94 (MQ=60)
ATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATG > SRR4302537.6432955/1‑94 (MQ=60)
ATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATG < SRR4302537.4423936/94‑1 (MQ=60)
GCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCG < SRR4302537.1971606/94‑1 (MQ=60)
GCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCG > SRR4302537.3552509/1‑94 (MQ=60)
CGCTGGGCAACAAACCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGG < SRR4302537.4450807/94‑1 (MQ=60)
CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCG < SRR4302537.308021/94‑1 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGctg > SRR4302537.6235061/1‑91 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGctg > SRR4302537.1561963/1‑91 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGctg < SRR4302537.2750400/94‑4 (MQ=60)
GCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGG < SRR4302537.5109274/94‑1 (MQ=60)
GCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGG < SRR4302537.4566174/94‑1 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGctggc > SRR4302537.6144609/1‑89 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGT < SRR4302537.5900051/94‑1 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATCCGGCGctggc > SRR4302537.5020746/1‑89 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTCTGTAGGCCGGCTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGT > SRR4302537.213762/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTC > SRR4302537.3495232/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCG > SRR4302537.3997794/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCG > SRR4302537.2188619/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCG > SRR4302537.2748564/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGC > SRR4302537.5807052/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGC > SRR4302537.1974341/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCG > SRR4302537.1068573/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGT > SRR4302537.1407303/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGT > SRR4302537.3685449/1‑94 (MQ=60)
AACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTC > SRR4302537.5497755/1‑94 (MQ=60)
AACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTC > SRR4302537.3830456/1‑94 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAT < SRR4302537.4944266/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAT < SRR4302537.4399751/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAT < SRR4302537.3577967/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAT > SRR4302537.5455383/1‑94 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAT > SRR4302537.5327735/1‑94 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCA < SRR4302537.6518913/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAG > SRR4302537.58731/1‑94 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGG > SRR4302537.1008903/1‑94 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGG < SRR4302537.2830264/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGC > SRR4302537.2437215/1‑94 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCC < SRR4302537.5392686/94‑1 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCT < SRR4302537.1724331/94‑1 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCT < SRR4302537.2627837/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTA > SRR4302537.6228488/1‑94 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAC > SRR4302537.4886809/1‑94 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAC > SRR4302537.2341854/1‑94 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAC > SRR4302537.2627784/1‑94 (MQ=60)
ATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACG > SRR4302537.5246306/1‑94 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGA < SRR4302537.5655483/94‑1 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACT < SRR4302537.5916847/94‑1 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACT > SRR4302537.1005288/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302537.4021757/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302537.5608848/1‑94 (MQ=60)
TTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTC < SRR4302537.3446682/94‑1 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302537.2403107/94‑1 (MQ=60)
TAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTGCG > SRR4302537.3964238/1‑94 (MQ=60)
TAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCG < SRR4302537.5946725/94‑1 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302537.3299010/1‑94 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC > SRR4302537.395140/1‑94 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302537.779932/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302537.6179535/94‑1 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGC > SRR4302537.596448/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302537.2461223/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302537.1705410/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302537.489868/1‑94 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA < SRR4302537.4067230/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302537.4073130/1‑94 (MQ=60)
GCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAA > SRR4302537.3764311/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302537.2584764/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302537.1116926/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302537.1988497/1‑94 (MQ=60)
TTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAA > SRR4302537.236132/1‑94 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG > SRR4302537.1922356/1‑94 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302537.1279974/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302537.3308953/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG > SRR4302537.1851387/1‑94 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG < SRR4302537.4908434/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG < SRR4302537.3957960/94‑1 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302537.607787/1‑94 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTACGCATCCGGCATAAACAACGAGCT > SRR4302537.4106413/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT < SRR4302537.4596493/94‑1 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA < SRR4302537.830656/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302537.2983842/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGCGCCGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302537.2027223/1‑94 (MQ=60)
AGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTA > SRR4302537.1689828/1‑94 (MQ=60)
GGCATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAA < SRR4302537.85226/94‑1 (MQ=60)
GCATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA < SRR4302537.2135322/94‑1 (MQ=60)
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GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA > NC_000913/4051051‑4051235
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
