Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,053,050	C→T	P290P (CCG→CCA)	glnL ←	GlnL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,053,050	0	C	T	96.2%	619.1 / 3.7	183	P290P (CCG→CCA)	glnL	GlnL
Reads supporting (aligned to +/- strand): ref base C (5/2); new base T (99/77); total (104/79)
Fisher's exact test for biased strand distribution p-value = 7.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 212 total aligned reads displayed.

ACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAAT  >  NC_000913/4052960‑4053139

aCNAGCGATGGATAAGCCAAGNNCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctgg                                                                                         <  1:2858489/93‑1 (MQ=255)

   aGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctggccc                                                                                      <  2:110093/93‑1 (MQ=255)

   aGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctggccc                                                                                      <  2:379739/93‑1 (MQ=255)

   aGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctggccc                                                                                      <  1:2409459/93‑1 (MQ=255)

    gCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctggcccg                                                                                     >  1:3856815/1‑93 (MQ=255)

      gATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATgcctggcccggt                                                                                   >  2:2533945/1‑91 (MQ=255)

      gATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGtt                                                                                   >  1:5363506/1‑93 (MQ=255)

      gATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGtt                                                                                   >  1:3121536/1‑93 (MQ=255)

      gATGGATAAACCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGtt                                                                                   >  2:3893464/1‑93 (MQ=255)

        tGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTAt                                                                                 >  2:6377101/1‑93 (MQ=255)

        tGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTAt                                                                                 >  1:3960528/1‑93 (MQ=255)

         ggATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAATAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATc                                                                                >  1:2722016/1‑93 (MQ=255)

         ggATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATc                                                                                <  2:2694107/93‑1 (MQ=255)

         ggATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATc                                                                                >  1:2756511/1‑93 (MQ=255)

         ggATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATc                                                                                <  1:4125982/93‑1 (MQ=255)

            tAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGCATGCCTGGCCCGTTATCTTc                                                                             >  2:6029247/1‑93 (MQ=255)

             aagccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTcc                                                                            <  2:4525355/93‑1 (MQ=255)

             aagccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTcc                                                                            <  1:2726476/93‑1 (MQ=255)

              agccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTGAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCca                                                                           >  1:4557243/1‑93 (MQ=255)

              agccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCca                                                                           <  2:3638655/93‑1 (MQ=255)

              agccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGAGGAATGCCCGGCCCGTTATCTTCca                                                                           >  2:4385412/1‑93 (MQ=255)

               gccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCcac                                                                          >  2:1869573/1‑93 (MQ=255)

               gccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCcac                                                                          >  2:5412851/1‑93 (MQ=255)

               gccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCcac                                                                          >  2:6301228/1‑93 (MQ=255)

                ccaagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCcaca                                                                         <  2:4040962/93‑1 (MQ=255)

                 caagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACAt                                                                        >  2:4503767/1‑93 (MQ=255)

                 caagccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACAt                                                                        <  1:1747521/93‑1 (MQ=255)

                   agccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCa                                                                      >  2:6071499/1‑93 (MQ=255)

                    gccCGGTGCCCCCTTCGCGGCCGCTGCCCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCaa                                                                     <  2:4956334/93‑1 (MQ=255)

                    gccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCaa                                                                     >  2:5052020/1‑93 (MQ=255)

                    gccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCaa                                                                     <  1:4825018/93‑1 (MQ=255)

                    gccCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCaa                                                                     >  1:5704991/1‑93 (MQ=255)

                     cccGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAAt                                                                    <  1:2962728/93‑1 (MQ=255)

                      ccGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATc                                                                   <  2:1223793/93‑1 (MQ=255)

                      ccGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATc                                                                   <  1:3133006/93‑1 (MQ=255)

                        ggTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCcg                                                                 >  2:1383816/1‑93 (MQ=255)

                         gTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCcgc                                                                >  1:610710/1‑93 (MQ=255)

                         gTGCCACCTTCGCGGCCGCCGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCcgc                                                                <  1:6210240/93‑1 (MQ=255)

                          tGCCACCTCCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCcgcg                                                               <  1:6001334/93‑1 (MQ=255)

                           gCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCgcgc                                                              <  2:1329045/93‑1 (MQ=255)

                             cACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGcgccg                                                            >  1:4600486/1‑93 (MQ=255)

                                cTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCa                                                         <  2:4767753/93‑1 (MQ=255)

                                cTTCACGGCGGCGGACCATCGGGTAAAACAGCGGATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAAGCCGCGCCGCCa                                                         <  1:355602/93‑1 (MQ=255)

                                  tCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGc                                                       <  2:4545689/93‑1 (MQ=255)

                                    gcgGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCg                                                     >  1:2149094/1‑93 (MQ=255)

                                    gcgGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAAGGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCg                                                     <  1:3471291/93‑1 (MQ=255)

                                      ggCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGt                                                   <  2:6204265/93‑1 (MQ=255)

                                      ggCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGt                                                   <  1:4264786/93‑1 (MQ=255)

                                         cGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAgc                                                >  1:101539/1‑93 (MQ=255)

                                         cGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAgc                                                >  2:6074057/1‑93 (MQ=255)

                                            tGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCt                                             >  1:3658235/1‑93 (MQ=255)

                                            tGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCt                                             <  1:2846344/93‑1 (MQ=255)

                                            tGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCt                                             >  1:4664018/1‑93 (MQ=255)

                                             gACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTc                                            >  1:5407815/1‑93 (MQ=255)

                                              aCCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCg                                           >  1:2231023/1‑93 (MQ=255)

                                               ccATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGc                                          >  2:4323376/1‑93 (MQ=255)

                                                 aTCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCg                                        >  1:5490442/1‑93 (MQ=255)

                                                  tCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgt                                       >  1:5754976/1‑93 (MQ=255)

                                                  tCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgt                                       >  1:4535641/1‑93 (MQ=255)

                                                  acGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgt                                       <  1:6374278/92‑1 (MQ=255)

                                                   cGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgtg                                      <  1:3536018/93‑1 (MQ=255)

                                                    gggTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgtgt                                     >  2:5773450/1‑93 (MQ=255)

                                                    gggTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCgtgt                                     <  1:404981/93‑1 (MQ=255)

                                                       tAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAg                                  <  2:2880125/93‑1 (MQ=255)

                                                        aaaaCAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAgg                                 <  1:1628405/93‑1 (MQ=255)

                                                         aaaCAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTATCGCTCGCCGTGTAAGGt                                <  2:576005/93‑1 (MQ=255)

                                                           aCAGCGTATCCTGCAAATGAGGCGGAATGCCTGGGCCGTTATATTCCACATCAATCCGCGTCGCCAGCCGGTAGGGCTCGCCGTGTAAGGTCa                              >  2:3026802/1‑93 (MQ=255)

                                                           aCAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCa                              >  2:1231467/1‑93 (MQ=255)

                                                             aGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGt                            <  1:3641954/93‑1 (MQ=255)

                                                             aGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGt                            >  2:4923716/1‑93 (MQ=255)

                                                                gTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTGAGTTGa                         >  2:3204585/1‑93 (MQ=255)

                                                                  aTCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGaaa                       <  1:6405459/93‑1 (MQ=255)

                                                                   tCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAGTCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAc                      <  2:3694520/93‑1 (MQ=255)

                                                                   tCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGTCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAc                      <  2:5260366/93‑1 (MQ=255)

                                                                   tCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAc                      <  1:5261760/93‑1 (MQ=255)

                                                                    ccTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcg                     >  2:3778372/1‑93 (MQ=255)

                                                                     cggCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcgc                    <  2:761728/91‑1 (MQ=255)

                                                                     cTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcgc                    <  2:4987683/93‑1 (MQ=255)

                                                                     cTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcgc                    >  2:5727992/1‑93 (MQ=255)

                                                                      tggaaaGGAGGCGGAATCCCGGGCCCGTTATCTTCCACTTCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcgcg                   <  1:2000005/90‑1 (MQ=255)

                                                                      tGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAcgcg                   >  1:1401309/1‑93 (MQ=255)

                                                                       gCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCgg                  <  1:2460187/93‑1 (MQ=255)

                                                                       gCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCgg                  >  1:754271/1‑93 (MQ=255)

                                                                        cAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGt                 >  1:1088046/1‑93 (MQ=255)

                                                                         aaaTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTg                >  2:3974478/1‑93 (MQ=255)

                                                                         aaaTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTg                >  2:3425629/1‑93 (MQ=255)

                                                                         aaaTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTg                >  2:1599077/1‑93 (MQ=255)

                                                                          aaTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCGGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGAGc               >  1:5795124/1‑93 (MQ=255)

                                                                          aaTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGc               >  2:5296631/1‑93 (MQ=255)

                                                                           aTGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCg              >  1:3308600/1‑93 (MQ=255)

                                                                            tGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCgg             >  2:3561059/1‑93 (MQ=255)

                                                                             gAGGCGGAATGCCTGGCCCGTTATCTTCCACATAAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCggg            <  2:1441775/93‑1 (MQ=255)

                                                                                gCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTAc         >  2:5574834/1‑93 (MQ=255)

                                                                                  ggAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGc       >  2:1479546/1‑93 (MQ=255)

                                                                                  ggAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGc       >  2:3488228/1‑93 (MQ=255)

                                                                                   gAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCa      >  1:4992563/1‑93 (MQ=255)

                                                                                    agtGCCGGGCGCGTTATCTCCCACATCAACCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAg     <  2:6670/91‑1 (MQ=255)

                                                                                     aTGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGa    >  1:1804411/1‑93 (MQ=255)

                                                                                     aTGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGa    >  2:2456739/1‑93 (MQ=255)

                                                                                       gcctggcccgTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGCAt  >  1:5931668/1‑93 (MQ=255)

ACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAAT  >  NC_000913/4052960‑4053139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGATT  >  NC_000913/4052957‑4053143

ATTACGAGCGATGGATAAGCCAAGCCCGGTGCCGCCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCT                                                                                               <  SRR4302537.5781944/94‑1 (MQ=60)

ATTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCT                                                                                               >  SRR4302537.2833768/1‑94 (MQ=60)

ATTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCT                                                                                               <  SRR4302537.4313900/94‑1 (MQ=60)

 TTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTG                                                                                              <  SRR4302537.690680/94‑1 (MQ=60)

 TTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTG                                                                                              <  SRR4302537.5817591/94‑1 (MQ=60)

 TTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTG                                                                                              >  SRR4302537.6432424/1‑94 (MQ=60)

   ACNAGCGATGGATAAGCCAAGNNCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGC                                                                                            <  SRR4302537.2878532/94‑1 (MQ=60)

    CGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCC                                                                                           >  SRR4302537.5986216/1‑94 (MQ=60)

     GAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCC                                                                                          <  SRR4302537.1780833/94‑1 (MQ=60)

      AGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCG                                                                                         <  SRR4302537.3999377/94‑1 (MQ=60)

      AGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCG                                                                                         >  SRR4302537.3883810/1‑94 (MQ=60)

      AGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCG                                                                                         <  SRR4302537.5748879/94‑1 (MQ=60)

      AGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCG                                                                                         <  SRR4302537.2426419/94‑1 (MQ=60)

        CGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTT                                                                                       >  SRR4302537.3143370/1‑94 (MQ=60)

        CGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTT                                                                                       <  SRR4302537.2938080/94‑1 (MQ=60)

        CGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTT                                                                                       >  SRR4302537.5400218/1‑94 (MQ=60)

         GATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTA                                                                                      >  SRR4302537.582409/1‑94 (MQ=60)

         GATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTA                                                                                      >  SRR4302537.3601757/1‑94 (MQ=60)

          ATGGATAAGCCAAGCCCGGTGCCCCCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTAT                                                                                     <  SRR4302537.3552876/94‑1 (MQ=60)

          ATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTAT                                                                                     >  SRR4302537.3988233/1‑94 (MQ=60)

           TGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAATAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATC                                                                                    >  SRR4302537.2741024/1‑94 (MQ=60)

           TGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATC                                                                                    >  SRR4302537.2775752/1‑94 (MQ=60)

            GGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCT                                                                                   <  SRR4302537.4154783/94‑1 (MQ=60)

              ATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTC                                                                                 >  SRR4302537.2473462/1‑94 (MQ=60)

              ATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTC                                                                                 <  SRR4302537.6253930/94‑1 (MQ=60)

                AAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTGAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCA                                                                               >  SRR4302537.4588793/1‑94 (MQ=60)

                AAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCA                                                                               <  SRR4302537.2328180/94‑1 (MQ=60)

                AAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCA                                                                               <  SRR4302537.2745514/94‑1 (MQ=60)

                 AGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCAC                                                                              >  SRR4302537.6077563/1‑94 (MQ=60)

                  GCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTGCACA                                                                             >  SRR4302537.448752/1‑94 (MQ=60)

                  GCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACA                                                                             <  SRR4302537.5670584/94‑1 (MQ=60)

                    CAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATC                                                                           <  SRR4302537.1759712/94‑1 (MQ=60)

                    CAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGAGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATC                                                                           <  SRR4302537.683243/94‑1 (MQ=60)

                      AGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAA                                                                         >  SRR4302537.5744036/1‑94 (MQ=60)

                      AGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGAATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAA                                                                         >  SRR4302537.4220083/1‑94 (MQ=60)

                       GCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAAT                                                                        <  SRR4302537.4858345/94‑1 (MQ=60)

                       GCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGAGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAAT                                                                        >  SRR4302537.4580174/1‑94 (MQ=60)

                        CCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATC                                                                       <  SRR4302537.2983525/94‑1 (MQ=60)

                         CCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCC                                                                      <  SRR4302537.3154991/94‑1 (MQ=60)

                         CCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCC                                                                      <  SRR4302537.3567164/94‑1 (MQ=60)

                           GGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGC                                                                    >  SRR4302537.614882/1‑94 (MQ=60)

                            GTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCG                                                                   <  SRR4302537.3922555/94‑1 (MQ=60)

                            GTGCCACCTTCGCGGCCGCCGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCG                                                                   <  SRR4302537.6253024/94‑1 (MQ=60)

                             TGCCACCTCCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGC                                                                  <  SRR4302537.6042558/94‑1 (MQ=60)

                              TCCACCTTCGCGGCCGCGTACCATCGGCTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCC                                                                 <  SRR4302537.5042186/94‑1 (MQ=60)

                               CCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCG                                                                >  SRR4302537.3014979/1‑94 (MQ=60)

                               CCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCG                                                                >  SRR4302537.4632330/1‑94 (MQ=60)

                               CCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCG                                                                >  SRR4302537.5944389/1‑94 (MQ=60)

                                 ACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCC                                                              >  SRR4302537.4136595/1‑94 (MQ=60)

                                   CTTCACGGCGGCGGACCATCGGGTAAAACAGCGGATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAAGCCGCGCCGCCAG                                                            <  SRR4302537.358073/94‑1 (MQ=60)

                                    CTCGCGGCCGCTGACCATCGGGTAAAACCGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGC                                                           <  SRR4302537.2873513/94‑1 (MQ=60)

                                      CGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCG                                                         >  SRR4302537.2164240/1‑94 (MQ=60)

                                      CGCGGCCGCGGAACATCGAGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCG                                                         <  SRR4302537.4766192/94‑1 (MQ=60)

                                       GCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAAGGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGG                                                        <  SRR4302537.3495851/94‑1 (MQ=60)

                                         GGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTA                                                      <  SRR4302537.4294420/94‑1 (MQ=60)

                                         GGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTA                                                      >  SRR4302537.3151925/1‑94 (MQ=60)

                                          GCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAG                                                     <  SRR4302537.2170831/94‑1 (MQ=60)

                                           CCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGC                                                    >  SRR4302537.102268/1‑94 (MQ=60)

                                            CGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCG                                                   >  SRR4302537.2403313/1‑94 (MQ=60)

                                              CTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCT                                                 >  SRR4302537.3683980/1‑94 (MQ=60)

                                              CTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCT                                                 >  SRR4302537.4696251/1‑94 (MQ=60)

                                              CTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCT                                                 <  SRR4302537.4656774/94‑1 (MQ=60)

                                               TGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTC                                                >  SRR4302537.5444699/1‑94 (MQ=60)

                                               TGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTC                                                <  SRR4302537.2866270/94‑1 (MQ=60)

                                               TGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTC                                                >  SRR4302537.2014148/1‑94 (MQ=60)

                                                GACCATCGGGTAAACCAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCG                                               <  SRR4302537.3804414/94‑1 (MQ=60)

                                                GACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCG                                               >  SRR4302537.2246763/1‑94 (MQ=60)

                                                 ACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGC                                              >  SRR4302537.3403691/1‑94 (MQ=60)

                                                  CCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACCTCAATCCGCGCCGCCAGCCGGGCGCGCGCGCC                                             >  SRR4302537.5361415/1‑94 (MQ=60)

                                                   CATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCG                                            <  SRR4302537.4834069/94‑1 (MQ=60)

                                                   CATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCG                                            >  SRR4302537.5527928/1‑94 (MQ=60)

                                                    ATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGT                                           >  SRR4302537.4567041/1‑94 (MQ=60)

                                                    ATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGT                                           >  SRR4302537.5794392/1‑94 (MQ=60)

                                                    ATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGT                                           >  SRR4302537.3323037/1‑94 (MQ=60)

                                                    ATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGCCCCGTTATCTTCCCCATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGT                                           <  SRR4302537.2184085/94‑1 (MQ=60)

                                                     TCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTG                                          >  SRR4302537.5465410/1‑94 (MQ=60)

                                                     TCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTG                                          <  SRR4302537.1947414/94‑1 (MQ=60)

                                                     ACGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTG                                          <  SRR4302537.6417753/94‑1 (MQ=60)

                                                      CGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGT                                         >  SRR4302537.1751087/1‑94 (MQ=60)

                                                      CGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGT                                         <  SRR4302537.3560998/94‑1 (MQ=60)

                                                       GGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTA                                        <  SRR4302537.407787/94‑1 (MQ=60)

                                                       GGGAAAAACAGTGTATCCTGCAAATGAGGCGGAATGCCGGGCCCGTTATCTCCCAAATCAAGCCGCGCCCCCAGCCGGTAGCGCTCGCCGTGTA                                        <  SRR4302537.2535442/94‑1 (MQ=60)

                                                        GGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAA                                       >  SRR4302537.4760199/1‑94 (MQ=60)

                                                        GGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAA                                       >  SRR4302537.3095393/1‑94 (MQ=60)

                                                          TAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGG                                     >  SRR4302537.6425041/1‑94 (MQ=60)

                                                           AAAACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGT                                    <  SRR4302537.1639790/94‑1 (MQ=60)

                                                             AACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCA                                  <  SRR4302537.2772294/94‑1 (MQ=60)

                                                              ACAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAG                                 <  SRR4302537.5413559/94‑1 (MQ=60)

                                                               CAGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGT                                >  SRR4302537.2689381/1‑94 (MQ=60)

                                                                AGCGTATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTT                               <  SRR4302537.3667604/94‑1 (MQ=60)

                                                                     ATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAC                          <  SRR4302537.6449058/94‑1 (MQ=60)

                                                                     ATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAC                          <  SRR4302537.5829247/94‑1 (MQ=60)

                                                                     ATCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAAC                          >  SRR4302537.383297/1‑94 (MQ=60)

                                                                      TCCTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACG                         <  SRR4302537.5297965/94‑1 (MQ=60)

                                                                        CTGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCG                       >  SRR4302537.1411073/1‑94 (MQ=60)

                                                                         TGGAAAGGAGGCGGAATCCCGGGCCCGTTATCTTCCACTTCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGG                      <  SRR4302537.2013911/94‑1 (MQ=60)

                                                                         TGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGG                      >  SRR4302537.759414/1‑94 (MQ=60)

                                                                         TGCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGG                      <  SRR4302537.1541532/94‑1 (MQ=60)

                                                                          GCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGT                     >  SRR4302537.1095560/1‑94 (MQ=60)

                                                                          GCAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGT                     <  SRR4302537.2477488/94‑1 (MQ=60)

                                                                           CAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTG                    <  SRR4302537.2745449/94‑1 (MQ=60)

                                                                           CAAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTG                    >  SRR4302537.3670954/1‑94 (MQ=60)

                                                                            AAATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCGGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGAGC                   >  SRR4302537.5834849/1‑94 (MQ=60)

                                                                             AATGAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCG                  >  SRR4302537.3332004/1‑94 (MQ=60)

                                                                                GAGGCGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGT               >  SRR4302537.616284/1‑94 (MQ=60)

                                                                                  GGCGGAATCCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTAC             <  SRR4302537.2798734/94‑1 (MQ=60)

                                                                                    CGGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGgaagc           >  SRR4302537.5949027/1‑89 (MQ=60)

                                                                                     GGAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCA          >  SRR4302537.5026966/1‑94 (MQ=60)

                                                                                      GAATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAG         >  SRR4302537.4965634/1‑94 (MQ=60)

                                                                                       AATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGA        >  SRR4302537.4590550/1‑94 (MQ=60)

                                                                                       AATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGA        >  SRR4302537.1817004/1‑94 (MQ=60)

                                                                                       AATGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGCCAGTTGAAACGCGGTGCGGGTACGCAGA        >  SRR4302537.533390/1‑94 (MQ=60)

                                                                                       AATGCCTGGCCCGTTATCTCCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGA        <  SRR4302537.1084276/94‑1 (MQ=60)

                                                                                        ATGCCGGCCCCGTTATCTCCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAA       <  SRR4302537.1230688/94‑1 (MQ=60)

                                                                                         TGCCTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGCAT      >  SRR4302537.5972367/1‑94 (MQ=60)

                                                                                            CTGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGAT   <  SRR4302537.4946261/94‑1 (MQ=60)

                                                                                            CTGGCCCGTTATCTCCCACATCAATCCGCCCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGAT   <  SRR4302537.1849030/94‑1 (MQ=60)

                                                                                            CTGGCCCGTTATATTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGAT   <  SRR4302537.3992734/94‑1 (MQ=60)

                                                                                             TGGCCCGTTATCTCCCACACCAACCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGATT  <  SRR4302537.2271035/94‑1 (MQ=60)

ATTACGAGCGATGGATAAGCCAAGCCCGGTGCCACCTTCGCGGCCGCTGACCATCGGGTAAAACAGCGTATCCTGCAAATGAGGCGGAATGCCCGGCCCGTTATCTTCCACATCAATCCGCGCCGCCAGCCGGTAGCGCTCGCCGTGTAAGGTCAGTTGAAACGCGGTGCGGGTACGCAGAATGATT  >  NC_000913/4052957‑4053143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`