Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,060,533 |
T→C |
C236C (TGT→TGC) |
yihN → |
putative resistance protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,060,533 | 0 | T | C | 95.1%
| 837.3
/ 24.0
| 265 | C236C (TGT→TGC) | yihN | putative resistance protein |
| Reads supporting (aligned to +/- strand): ref base T (6/7); new base C (140/112); total (146/119) |
| Fisher's exact test for biased strand distribution p-value = 5.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.14e-01 |
Only 100 of 269 total aligned reads displayed.
GCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGT > NC_000913/4060441‑4060623
|
aTCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCgg < 1:4894964/93‑1 (MQ=255)
tCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGc > 2:6000553/1‑93 (MQ=255)
aaaaaCACCAGTATGACCTCGGTGCTGAAAGACCAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTg > 1:314205/1‑93 (MQ=255)
aaaaaCACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTg < 1:5532438/93‑1 (MQ=255)
aaaaCACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGa > 2:576002/1‑93 (MQ=255)
aaaCACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGAc > 2:5157400/1‑93 (MQ=255)
aaaCACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGAc < 2:2143188/93‑1 (MQ=255)
acacCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACAt < 1:712336/93‑1 (MQ=255)
acCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACAttc < 1:5293806/93‑1 (MQ=255)
gTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTca < 2:5015880/93‑1 (MQ=255)
tATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcat > 1:4809758/1‑93 (MQ=255)
tGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattc < 2:3133226/93‑1 (MQ=255)
tGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattc < 2:5385730/93‑1 (MQ=255)
gACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattcc < 1:4308455/93‑1 (MQ=255)
tccTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattcca < 1:3690229/92‑1 (MQ=255)
ccTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCATCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattccat < 1:4551003/93‑1 (MQ=255)
cTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattccatt < 1:2265671/93‑1 (MQ=255)
cTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattccatt > 1:2439957/1‑93 (MQ=255)
tCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTcattccattc > 1:3875579/1‑93 (MQ=255)
tGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGa > 2:3544767/1‑93 (MQ=255)
tGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGa > 2:3665628/1‑93 (MQ=255)
gCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaa > 2:2547375/1‑93 (MQ=255)
cTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaa < 1:3479668/93‑1 (MQ=255)
cTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaa > 2:3503470/1‑93 (MQ=255)
tGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaaa > 2:4925823/1‑93 (MQ=255)
gAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaaaa > 2:4047773/1‑93 (MQ=255)
gAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaaaa > 2:4750661/1‑93 (MQ=255)
gAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGaaaaa > 1:2699021/1‑93 (MQ=255)
aaaGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAAc > 2:2915579/1‑93 (MQ=255)
aGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACat > 1:4533157/1‑93 (MQ=255)
aGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACat > 2:3825638/1‑93 (MQ=255)
aGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACat > 1:1984623/1‑93 (MQ=255)
gACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatc > 1:4470873/1‑93 (MQ=255)
gACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatc > 1:6352923/1‑93 (MQ=255)
cAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACatcta < 1:3498199/93‑1 (MQ=255)
cAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatcta > 1:78994/1‑93 (MQ=255)
cAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatcta < 1:2776552/93‑1 (MQ=255)
cAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatcta > 2:4887640/1‑93 (MQ=255)
aaaaCTATCTGGCTTATCGCTTTTAGCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatctat < 2:1056568/93‑1 (MQ=255)
aaaCTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatctatc > 2:3681492/1‑93 (MQ=255)
aaaCTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatctatc > 1:1533921/1‑93 (MQ=255)
aaCTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACatctatct > 2:1555054/1‑93 (MQ=255)
tATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTAtt > 1:3617814/1‑93 (MQ=255)
tATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTAtt < 1:4080899/93‑1 (MQ=255)
aTCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTg > 1:104744/1‑93 (MQ=255)
aTCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTg > 2:5351908/1‑93 (MQ=255)
tCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGc > 1:6245029/1‑93 (MQ=255)
tCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGc > 2:4507532/1‑93 (MQ=255)
tCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGc < 1:4951081/93‑1 (MQ=255)
tCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTAACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGc > 2:171846/1‑93 (MQ=255)
gCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGt > 2:3912024/1‑93 (MQ=255)
ttATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTg > 2:2406868/1‑93 (MQ=255)
ttATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTg > 2:6130209/1‑93 (MQ=255)
aTCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTgcg < 1:1322362/93‑1 (MQ=255)
tCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTgcgc < 2:4877970/93‑1 (MQ=255)
tCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTgcgc < 2:6256626/93‑1 (MQ=255)
cGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCt > 2:2060392/1‑93 (MQ=255)
gCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtg > 2:1972770/1‑93 (MQ=255)
gCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtg > 1:4288129/1‑93 (MQ=255)
gCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtg > 2:4347194/1‑93 (MQ=255)
gCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtg > 1:2954932/1‑93 (MQ=255)
cTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtgg > 1:2351545/1‑93 (MQ=255)
ttttAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCtggt > 2:4161985/1‑93 (MQ=255)
tAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTggg < 1:1663873/93‑1 (MQ=255)
tAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTggg < 1:2645431/93‑1 (MQ=255)
tAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTggg > 1:3273776/1‑93 (MQ=255)
aaCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTgggg < 2:4210362/93‑1 (MQ=255)
aaCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTgggg < 2:3776073/93‑1 (MQ=255)
aaCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTgggg > 2:4110290/1‑93 (MQ=255)
aCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTggggg > 2:5485007/1‑93 (MQ=255)
aCGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTggggg > 1:5438961/1‑93 (MQ=255)
gTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCt < 1:2302955/93‑1 (MQ=255)
gTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCt > 1:5124204/1‑93 (MQ=255)
gTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCt > 1:3429031/1‑93 (MQ=255)
tcttctTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCtt > 1:310146/1‑93 (MQ=255)
tcttctTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCtt > 1:5830856/1‑93 (MQ=255)
ttcttcGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTAc > 2:731820/1‑93 (MQ=255)
ttcttcGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTAc < 1:6445532/93‑1 (MQ=255)
tcttcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACg > 1:6017500/1‑93 (MQ=255)
cGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcat < 2:3366252/93‑1 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca < 2:4228373/93‑1 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca > 2:6106912/1‑93 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca > 1:4033597/1‑93 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca < 1:5986236/93‑1 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca > 1:5704908/1‑93 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca < 1:5585160/93‑1 (MQ=255)
tttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatca > 1:4760670/1‑93 (MQ=255)
ttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatcat < 1:763499/93‑1 (MQ=255)
ttACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGcatcat < 2:5865676/93‑1 (MQ=255)
tACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAtt > 2:1210314/1‑93 (MQ=255)
tACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGCTGCGCTGGTGGGGGCTTACGGCATCAtt > 2:2889585/1‑93 (MQ=255)
aCGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTa > 1:1089975/1‑93 (MQ=255)
cgcgGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTaa < 2:4967750/93‑1 (MQ=255)
cgcgGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTaa > 1:2196148/1‑93 (MQ=255)
tttACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAAt > 1:5898752/1‑93 (MQ=255)
tttACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAAt < 1:5030148/93‑1 (MQ=255)
tttACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAAt > 2:1166853/1‑93 (MQ=255)
ttACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATa < 1:3577570/93‑1 (MQ=255)
cTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTg < 2:3715697/93‑1 (MQ=255)
tgtgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGt < 2:570012/93‑1 (MQ=255)
|
GCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGT > NC_000913/4060441‑4060623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTG > NC_000913/4060440‑4060626
|
AGCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGC < SRR4302537.3136407/94‑1 (MQ=60)
AGCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGC < SRR4302537.146556/94‑1 (MQ=60)
AGCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGC > SRR4302537.5463202/1‑94 (MQ=60)
GCATCGAAAAGCACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCG < SRR4302537.2483045/94‑1 (MQ=60)
GCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTG < SRR4302537.1677324/94‑1 (MQ=60)
GCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCG < SRR4302537.3531768/94‑1 (MQ=60)
CATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGG > SRR4302537.5605389/1‑94 (MQ=60)
ATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGC < SRR4302537.4928761/94‑1 (MQ=60)
CTAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCT > SRR4302537.2681899/1‑94 (MQ=60)
GAAAAACACCAGTATGACCTCGGTGCTGAAAGACCAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTG > SRR4302537.316381/1‑94 (MQ=60)
GAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTG > SRR4302537.1457437/1‑94 (MQ=60)
AAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGA > SRR4302537.1077072/1‑94 (MQ=60)
AAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGA > SRR4302537.311313/1‑94 (MQ=60)
AAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGA < SRR4302537.5570202/94‑1 (MQ=60)
ACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATT < SRR4302537.717212/94‑1 (MQ=60)
ACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCT < SRR4302537.5330182/94‑1 (MQ=60)
ACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCT < SRR4302537.2465077/94‑1 (MQ=60)
CAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTT > SRR4302537.3663873/1‑94 (MQ=60)
CAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTC < SRR4302537.2510443/94‑1 (MQ=60)
AGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCA < SRR4302537.3963303/94‑1 (MQ=60)
AGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCA > SRR4302537.5127658/1‑94 (MQ=60)
GTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCAT > SRR4302537.4673228/1‑94 (MQ=60)
GTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCAT > SRR4302537.4842959/1‑94 (MQ=60)
GTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCAT > SRR4302537.1468605/1‑94 (MQ=60)
TATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATT < SRR4302537.2863034/94‑1 (MQ=60)
ATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTC > SRR4302537.2425702/1‑94 (MQ=60)
GACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCA < SRR4302537.4338400/94‑1 (MQ=60)
TCCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCAT < SRR4302537.3716194/94‑1 (MQ=60)
CCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATT > SRR4302537.2457138/1‑94 (MQ=60)
CCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCATCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATT < SRR4302537.4582497/94‑1 (MQ=60)
CTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTC < SRR4302537.3062863/94‑1 (MQ=60)
CTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTC < SRR4302537.2281670/94‑1 (MQ=60)
CTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTC > SRR4302537.3902689/1‑94 (MQ=60)
TCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCC > SRR4302537.49918/1‑94 (MQ=60)
GTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGA < SRR4302537.4081938/94‑1 (MQ=60)
TGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAA > SRR4302537.4637334/1‑94 (MQ=60)
CTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACTCGGTTTACTGCGGCCTGACATTCTTCACTCCATTCCTGCAAA > SRR4302537.5903352/1‑94 (MQ=60)
CTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAA < SRR4302537.3504288/94‑1 (MQ=60)
TGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAA > SRR4302537.4506368/1‑94 (MQ=60)
TGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAA > SRR4302537.2717877/1‑94 (MQ=60)
TGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAA > SRR4302537.4399619/1‑94 (MQ=60)
TGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAA > SRR4302537.6300327/1‑94 (MQ=60)
GAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGTGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAAC < SRR4302537.3484783/94‑1 (MQ=60)
AAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACAT > SRR4302537.4564547/1‑94 (MQ=60)
AAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACAT > SRR4302537.6152454/1‑94 (MQ=60)
AAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACAT > SRR4302537.1998414/1‑94 (MQ=60)
AAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACAT < SRR4302537.2758007/94‑1 (MQ=60)
AAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGATTACGCGGTTTAATGCGGCCTGACATTCTTCATTACATTCCTGAAAAACAT > SRR4302537.387722/1‑94 (MQ=60)
AGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATC > SRR4302537.4501797/1‑94 (MQ=60)
AGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATC > SRR4302537.6396294/1‑94 (MQ=60)
ACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTA > SRR4302537.4820638/1‑94 (MQ=60)
ACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTA > SRR4302537.79576/1‑94 (MQ=60)
CAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTAT < SRR4302537.3522951/94‑1 (MQ=60)
CAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTAT < SRR4302537.428827/94‑1 (MQ=60)
CAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTAT < SRR4302537.4570513/94‑1 (MQ=60)
CAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTAT < SRR4302537.2795963/94‑1 (MQ=60)
AAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATC > SRR4302537.4857993/1‑94 (MQ=60)
AAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATC > SRR4302537.1544637/1‑94 (MQ=60)
AAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCT > SRR4302537.556983/1‑94 (MQ=60)
AAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCT < SRR4302537.1896795/94‑1 (MQ=60)
AACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTA > SRR4302537.3457148/1‑94 (MQ=60)
AACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTA > SRR4302537.2316993/1‑94 (MQ=60)
ACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTAT < SRR4302537.3226231/94‑1 (MQ=60)
CTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATT > SRR4302537.3643319/1‑94 (MQ=60)
TATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTG > SRR4302537.105498/1‑94 (MQ=60)
TATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTG < SRR4302537.4109386/94‑1 (MQ=60)
ATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGC < SRR4302537.497719/94‑1 (MQ=60)
ATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGC > SRR4302537.6522674/1‑94 (MQ=60)
ATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGC > SRR4302537.6287945/1‑94 (MQ=60)
TCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCC < SRR4302537.4985226/94‑1 (MQ=60)
CTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCC > SRR4302537.5116198/1‑94 (MQ=60)
CTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTG > SRR4302537.854321/1‑94 (MQ=60)
CTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTG > SRR4302537.2010962/1‑94 (MQ=60)
TTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGC > SRR4302537.5845613/1‑94 (MQ=60)
TTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGC > SRR4302537.3945147/1‑94 (MQ=60)
TATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCG < SRR4302537.5716229/94‑1 (MQ=60)
ATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGC > SRR4302537.5551449/1‑94 (MQ=60)
ATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGC < SRR4302537.1331578/94‑1 (MQ=60)
TCGCTTTTAACATCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCT < SRR4302537.2684802/94‑1 (MQ=60)
CGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTG > SRR4302537.4317938/1‑94 (MQ=60)
CGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTG > SRR4302537.3396488/1‑94 (MQ=60)
CGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTG > SRR4302537.2975667/1‑94 (MQ=60)
GCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGG > SRR4302537.5174871/1‑94 (MQ=60)
GCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGG > SRR4302537.5174872/1‑94 (MQ=60)
GCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGG > SRR4302537.2368100/1‑94 (MQ=60)
TTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTG < SRR4302537.3637830/94‑1 (MQ=60)
TTTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTG < SRR4302537.2344093/94‑1 (MQ=60)
TTTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGG > SRR4302537.5952496/1‑94 (MQ=60)
TTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGG < SRR4302537.3161737/94‑1 (MQ=60)
TTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGG < SRR4302537.4578663/94‑1 (MQ=60)
TTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGG > SRR4302537.3296878/1‑94 (MQ=60)
TTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGG < SRR4302537.789021/94‑1 (MQ=60)
TTAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGG < SRR4302537.6226389/94‑1 (MQ=60)
TAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGG < SRR4302537.1675533/94‑1 (MQ=60)
TAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGG < SRR4302537.3587580/94‑1 (MQ=60)
TAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGG > SRR4302537.5588344/1‑94 (MQ=60)
TAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGG < SRR4302537.2663933/94‑1 (MQ=60)
TAACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGG < SRR4302537.4302837/94‑1 (MQ=60)
AACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGG > SRR4302537.5476064/1‑94 (MQ=60)
AACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGG < SRR4302537.1596051/94‑1 (MQ=60)
ACGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGC > SRR4302537.3142537/1‑94 (MQ=60)
CGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCT > SRR4302537.3453301/1‑94 (MQ=60)
CGTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCT > SRR4302537.5159517/1‑94 (MQ=60)
GTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTT > SRR4302537.6506382/1‑94 (MQ=60)
GTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTT > SRR4302537.312292/1‑94 (MQ=60)
GTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTT > SRR4302537.5870820/1‑94 (MQ=60)
GTCTTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTT < SRR4302537.2319211/94‑1 (MQ=60)
TTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACG > SRR4302537.6058840/1‑94 (MQ=60)
TTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACG < SRR4302537.76207/94‑1 (MQ=60)
TTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACG < SRR4302537.6489260/94‑1 (MQ=60)
TTCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACG < SRR4302537.6028833/94‑1 (MQ=60)
TCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGG > SRR4302537.3426158/1‑94 (MQ=60)
TCTTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGG > SRR4302537.6438509/1‑94 (MQ=60)
TTCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCA > SRR4302537.5339962/1‑94 (MQ=60)
TCGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCAT < SRR4302537.4323620/94‑1 (MQ=60)
CGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATC < SRR4302537.2128966/94‑1 (MQ=60)
CGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATC > SRR4302537.4951947/1‑94 (MQ=60)
CGTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATC > SRR4302537.1290614/1‑94 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA > SRR4302537.4793552/1‑94 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA > SRR4302537.6383704/1‑94 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA > SRR4302537.488621/1‑94 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA < SRR4302537.3738622/94‑1 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA > SRR4302537.5743952/1‑94 (MQ=60)
GTTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCA > SRR4302537.4061829/1‑94 (MQ=60)
TTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAT < SRR4302537.992733/94‑1 (MQ=60)
TTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAT < SRR4302537.6027318/94‑1 (MQ=60)
TTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAT > SRR4302537.5893264/1‑94 (MQ=60)
TTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAT < SRR4302537.3513873/94‑1 (MQ=60)
TTTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCAT < SRR4302537.5623347/94‑1 (MQ=60)
TTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATT < SRR4302537.6011130/94‑1 (MQ=60)
TTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATT < SRR4302537.768722/94‑1 (MQ=60)
TTACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATT < SRR4302537.2276510/94‑1 (MQ=60)
TACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTA > SRR4302537.1097501/1‑94 (MQ=60)
TCGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAA < SRR4302537.2300905/94‑1 (MQ=60)
TCGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAA < SRR4302537.4500447/94‑1 (MQ=60)
ACGCGGTTTCCTGCTGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTAGTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAA < SRR4302537.725613/94‑1 (MQ=60)
ACGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAA > SRR4302537.2211623/1‑94 (MQ=60)
CGCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAAC < SRR4302537.2342006/94‑1 (MQ=60)
GCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACC > SRR4302537.2826313/1‑94 (MQ=60)
GCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACC > SRR4302537.355162/1‑94 (MQ=60)
GCGGTTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACC < SRR4302537.5867259/94‑1 (MQ=60)
GTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAAT > SRR4302537.5939226/1‑94 (MQ=60)
TTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATA < SRR4302537.3619037/94‑1 (MQ=60)
TTTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATA < SRR4302537.5064780/94‑1 (MQ=60)
TTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATAC < SRR4302537.431868/94‑1 (MQ=60)
TTACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATAC < SRR4302537.3602791/94‑1 (MQ=60)
ACTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTG > SRR4302537.1122513/1‑94 (MQ=60)
CTGCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGT > SRR4302537.3304481/1‑94 (MQ=60)
GCGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCT < SRR4302537.6030863/94‑1 (MQ=60)
CGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTG > SRR4302537.43864/1‑94 (MQ=60)
CGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTG < SRR4302537.3285534/94‑1 (MQ=60)
|
AGCATCGAAAAACACCAGTATGACCTCGGTGCTGAAAGACAAAACTATCTGGCTTATCGCTTTTAACGTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTG > NC_000913/4060440‑4060626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
