Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,146,144	T→C	T567T (ACA→ACG)	yijP ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,146,144	0	T	C	100.0%	872.6 / NA	249	T567T (ACA→ACG)	yijP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/139); total (110/139)

Only 100 of 261 total aligned reads displayed.

GTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGG  >  NC_000913/4146054‑4146232

 tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgcgtg                                                                                       <  2:2157156/93‑1 (MQ=255)

 tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgcgtg                                                                                       >  1:2680573/1‑93 (MQ=255)

 tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATCACCCACCTGATCGCCATAGGGCAgcgtg                                                                                       <  2:4898049/93‑1 (MQ=255)

  aGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGAAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgcgtgt                                                                                      <  1:4080733/93‑1 (MQ=255)

   ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTc                                                                                     <  1:6351328/93‑1 (MQ=255)

   ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTc                                                                                     <  1:6036654/93‑1 (MQ=255)

    gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCg                                                                                    >  2:6070913/1‑93 (MQ=255)

     ccGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGt                                                                                   >  2:479912/1‑93 (MQ=255)

       ggATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTaa                                                                                 <  2:133697/93‑1 (MQ=255)

       ggATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTaa                                                                                 >  2:2258341/1‑93 (MQ=255)

        gATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAt                                                                                <  2:6446704/93‑1 (MQ=255)

        gATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAt                                                                                <  1:830095/93‑1 (MQ=255)

        gATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAt                                                                                <  2:1171756/93‑1 (MQ=255)

        gATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAt                                                                                >  2:5547922/1‑93 (MQ=255)

         aTAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATc                                                                               <  2:2555934/93‑1 (MQ=255)

           aaGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGa                                                                             >  1:3326710/1‑93 (MQ=255)

           aaGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGa                                                                             <  1:4534254/93‑1 (MQ=255)

           aaGACGCGTCAAGCGGCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGa                                                                             <  1:4309119/93‑1 (MQ=255)

            aGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGAt                                                                            <  2:310317/93‑1 (MQ=255)

                 cgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTg                                                                       <  2:6205951/93‑1 (MQ=255)

                  gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGc                                                                      <  1:1474457/93‑1 (MQ=255)

                  gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGc                                                                      <  1:2964559/93‑1 (MQ=255)

                  gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGc                                                                      <  1:4597265/93‑1 (MQ=255)

                    cAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGt                                                                    <  1:3906387/93‑1 (MQ=255)

                     aaGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtt                                                                   <  1:4749101/93‑1 (MQ=255)

                     aaGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtt                                                                   <  1:4917187/93‑1 (MQ=255)

                     aaGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtt                                                                   <  1:5847786/93‑1 (MQ=255)

                     aaGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtt                                                                   <  1:1334258/93‑1 (MQ=255)

                       gCGTCTCATCCGGCAAATAGCGCCTGGCTGATAATTTCTGATTTCCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtttt                                                                 <  1:1984458/93‑1 (MQ=255)

                       gCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGtttt                                                                 <  2:5599774/93‑1 (MQ=255)

                        cGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGttttt                                                                <  2:2474536/93‑1 (MQ=255)

                         gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTc                                                               <  2:3982445/93‑1 (MQ=255)

                         gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTc                                                               <  2:104559/93‑1 (MQ=255)

                          tCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCt                                                              <  2:5871749/93‑1 (MQ=255)

                          tCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCt                                                              >  1:5994062/1‑93 (MQ=255)

                            gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTta                                                            <  2:3224801/93‑1 (MQ=255)

                            gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTta                                                            <  2:4362629/93‑1 (MQ=255)

                            gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTta                                                            <  2:1196096/93‑1 (MQ=255)

                             cATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTtat                                                           <  2:6153631/93‑1 (MQ=255)

                              aTCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTtata                                                          >  2:2175684/1‑93 (MQ=255)

                              aTCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTtata                                                          >  1:2237845/1‑93 (MQ=255)

                               tCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAc                                                         <  1:2449418/93‑1 (MQ=255)

                               tCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAc                                                         <  1:4642442/93‑1 (MQ=255)

                               tCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAc                                                         >  1:2401831/1‑93 (MQ=255)

                                ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg                                                        <  2:800171/93‑1 (MQ=255)

                                ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg                                                        >  1:6275860/1‑93 (MQ=255)

                                ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACg                                                        <  1:3682730/93‑1 (MQ=255)

                                 cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                                                       <  2:163104/93‑1 (MQ=255)

                                 cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                                                       >  2:1899656/1‑93 (MQ=255)

                                 cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                                                       >  2:2739344/1‑93 (MQ=255)

                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg                                                      <  2:3372259/93‑1 (MQ=255)

                                   gCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt                                                     <  1:1902618/93‑1 (MQ=255)

                                   gCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt                                                     <  2:4051500/93‑1 (MQ=255)

                                    cAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGtt                                                    <  2:3712245/93‑1 (MQ=255)

                                     aaaTAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                                                   >  2:1099108/1‑93 (MQ=255)

                                     aaaTAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                                                   >  1:2705398/1‑93 (MQ=255)

                                      aaTAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAc                                                  >  2:2987200/1‑93 (MQ=255)

                                       aTAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTCATACGGGTTAcc                                                 <  1:3486895/93‑1 (MQ=255)

                                         aGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCaa                                               <  2:1594799/93‑1 (MQ=255)

                                          gcgcCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAt                                              <  1:101472/93‑1 (MQ=255)

                                              cTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAg                                          <  1:6454568/93‑1 (MQ=255)

                                               tGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGc                                         >  1:4428069/1‑93 (MQ=255)

                                               tGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGc                                         >  2:4880415/1‑93 (MQ=255)

                                               tGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGc                                         >  1:2061476/1‑93 (MQ=255)

                                               tGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGc                                         >  1:1618719/1‑93 (MQ=255)

                                                ggCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCg                                        >  2:1644855/1‑93 (MQ=255)

                                                 gCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCgg                                       <  2:3568376/93‑1 (MQ=255)

                                                   tGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGt                                     >  1:54686/1‑93 (MQ=255)

                                                   tGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGt                                     >  1:1375838/1‑93 (MQ=255)

                                                   tGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGt                                     >  2:5159631/1‑93 (MQ=255)

                                                      tAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGt                                  >  1:3607598/1‑93 (MQ=255)

                                                       aaTTAGTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAGCGGTTACTAATCCAGCGGGGAGtt                                 >  2:4634051/1‑93 (MQ=255)

                                                         ttACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTc                               <  2:5689876/93‑1 (MQ=255)

                                                            cTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCttt                            <  1:4331431/93‑1 (MQ=255)

                                                             tGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTg                           <  2:5925383/93‑1 (MQ=255)

                                                              gATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGa                          >  2:3413151/1‑93 (MQ=255)

                                                              gATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGa                          >  2:5265168/1‑93 (MQ=255)

                                                              gATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGa                          <  2:6462289/93‑1 (MQ=255)

                                                              gATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGa                          >  2:4273731/1‑93 (MQ=255)

                                                                ttACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAc                        >  1:5719605/1‑93 (MQ=255)

                                                                ttACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAc                        <  2:1705135/93‑1 (MQ=255)

                                                                ttACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAc                        <  2:3847084/93‑1 (MQ=255)

                                                                  aCCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTg                      <  2:245916/93‑1 (MQ=255)

                                                                   cccACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGc                     <  1:23771/93‑1 (MQ=255)

                                                                   cccACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGc                     <  2:6117314/93‑1 (MQ=255)

                                                                    ccACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCg                    >  2:4451894/1‑93 (MQ=255)

                                                                    ccACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCg                    >  1:4649280/1‑93 (MQ=255)

                                                                      aCCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGa                  <  1:5946765/93‑1 (MQ=255)

                                                                      aCCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGa                  >  2:496858/1‑93 (MQ=255)

                                                                       ccTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGAt                 <  2:5417931/93‑1 (MQ=255)

                                                                       ccTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGAt                 >  1:1139942/1‑93 (MQ=255)

                                                                         tGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTc               >  1:1857236/1‑93 (MQ=255)

                                                                         tGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTc               >  1:4828639/1‑93 (MQ=255)

                                                                          gATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTca              >  2:1441270/1‑93 (MQ=255)

                                                                              gCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTcaccac          >  1:1665186/1‑93 (MQ=255)

                                                                                cATAGGGCAGCGAGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTg        >  2:5170347/1‑93 (MQ=255)

                                                                                  tAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGaa      >  2:376355/1‑93 (MQ=255)

                                                                                  tAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGaa      >  2:2064794/1‑93 (MQ=255)

                                                                                    gggCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACg    >  1:4057274/1‑93 (MQ=255)

                                                                                     ggCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACgg   <  1:735152/93‑1 (MQ=255)

GTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGG  >  NC_000913/4146054‑4146232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGA  >  NC_000913/4146051‑4146237

TCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGC                                                                                               <  SRR4302537.963301/94‑1 (MQ=60)

TCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGC                                                                                               >  SRR4302537.4164509/1‑94 (MQ=60)

TCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGC                                                                                               <  SRR4302537.1172838/94‑1 (MQ=60)

 CTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCG                                                                                              >  SRR4302537.4511268/1‑94 (MQ=60)

 CTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCG                                                                                              <  SRR4302537.4193723/94‑1 (MQ=60)

 CTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCG                                                                                              >  SRR4302537.2633421/1‑94 (MQ=60)

 CTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGCGCAGCG                                                                                              >  SRR4302537.2445534/1‑94 (MQ=60)

  TGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGT                                                                                             <  SRR4302537.1038219/94‑1 (MQ=60)

   GTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTG                                                                                            >  SRR4302537.2699290/1‑94 (MQ=60)

   GTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTG                                                                                            <  SRR4302537.6155726/94‑1 (MQ=60)

     AGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTC                                                                                          <  SRR4302537.837790/94‑1 (MQ=60)

     AGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGAAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTC                                                                                          <  SRR4302537.4109219/94‑1 (MQ=60)

      GGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCG                                                                                         <  SRR4302537.6078129/94‑1 (MQ=60)

      GGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCG                                                                                         >  SRR4302537.1658180/1‑94 (MQ=60)

      GGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCG                                                                                         <  SRR4302537.6394692/94‑1 (MQ=60)

         CGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAA                                                                                      <  SRR4302537.798696/94‑1 (MQ=60)

          GGATAAGACGCGTCAAGCGTCTCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAT                                                                                     <  SRR4302537.5981642/94‑1 (MQ=60)

          GGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAAT                                                                                     >  SRR4302537.63651/1‑94 (MQ=60)

           GATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATC                                                                                    <  SRR4302537.835775/94‑1 (MQ=60)

            ATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCG                                                                                   <  SRR4302537.2782811/94‑1 (MQ=60)

             TAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGA                                                                                  >  SRR4302537.3350250/1‑94 (MQ=60)

              AAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGAT                                                                                 <  SRR4302537.4458969/94‑1 (MQ=60)

              AAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGAT                                                                                 <  SRR4302537.4565646/94‑1 (MQ=60)

              AAGACGCGTCAAGCGGCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGAT                                                                                 <  SRR4302537.4339069/94‑1 (MQ=60)

               AGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATC                                                                                >  SRR4302537.1453940/1‑94 (MQ=60)

                GACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCA                                                                               <  SRR4302537.6484175/94‑1 (MQ=60)

                 ACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAG                                                                              <  SRR4302537.3594218/94‑1 (MQ=60)

                 ACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAG                                                                              <  SRR4302537.6049477/94‑1 (MQ=60)

                 ACGCGTCAAGCGTCGCATCCGGCAAATAGAGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGCTCAG                                                                              >  SRR4302537.2587049/1‑94 (MQ=60)

                  CGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGT                                                                             <  SRR4302537.750858/94‑1 (MQ=60)

                   GCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTG                                                                            <  SRR4302537.1206926/94‑1 (MQ=60)

                   GCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTG                                                                            <  SRR4302537.5597851/94‑1 (MQ=60)

                   GCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTG                                                                            <  SRR4302537.4741719/94‑1 (MQ=60)

                    CGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGC                                                                           <  SRR4302537.680263/94‑1 (MQ=60)

                     GTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCG                                                                          <  SRR4302537.1484703/94‑1 (MQ=60)

                     GTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCG                                                                          <  SRR4302537.2985364/94‑1 (MQ=60)

                     GTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCG                                                                          <  SRR4302537.4629080/94‑1 (MQ=60)

                     GTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCG                                                                          <  SRR4302537.1524101/94‑1 (MQ=60)

                     GTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCG                                                                          >  SRR4302537.4650695/1‑94 (MQ=60)

                      TCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGT                                                                         >  SRR4302537.5057245/1‑94 (MQ=60)

                       CAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTT                                                                        <  SRR4302537.3852815/94‑1 (MQ=60)

                       CAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTT                                                                        <  SRR4302537.3933696/94‑1 (MQ=60)

                        AAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTT                                                                       <  SRR4302537.5887883/94‑1 (MQ=60)

                        AAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTT                                                                       <  SRR4302537.1343550/94‑1 (MQ=60)

                        AAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTT                                                                       <  SRR4302537.4781907/94‑1 (MQ=60)

                        AAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTT                                                                       <  SRR4302537.4951112/94‑1 (MQ=60)

                          GCGTCTCATCCGGCAAATAGCGCCTGGCTGATAATTTCTGATTTCCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTT                                                                     <  SRR4302537.1998248/94‑1 (MQ=60)

                          GCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTT                                                                     <  SRR4302537.4423187/94‑1 (MQ=60)

                           CGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTC                                                                    >  SRR4302537.3361149/1‑94 (MQ=60)

                            GTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCT                                                                   >  SRR4302537.6035231/1‑94 (MQ=60)

                                CATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATA                                                               >  SRR4302537.2253627/1‑94 (MQ=60)

                                 ATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAC                                                              <  SRR4302537.6046126/94‑1 (MQ=60)

                                 ATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAC                                                              >  SRR4302537.2418743/1‑94 (MQ=60)

                                 ATCCGGCAAATAGCGCCTGGATGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATAC                                                              <  SRR4302537.233717/94‑1 (MQ=60)

                                  TCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACG                                                             >  SRR4302537.6318919/1‑94 (MQ=60)

                                  TCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACG                                                             <  SRR4302537.2466647/94‑1 (MQ=60)

                                  TCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACG                                                             <  SRR4302537.4674546/94‑1 (MQ=60)

                                   CCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGG                                                            >  SRR4302537.2440467/1‑94 (MQ=60)

                                   CCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGG                                                            >  SRR4302537.3376318/1‑94 (MQ=60)

                                   CCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGG                                                            <  SRR4302537.3708629/94‑1 (MQ=60)

                                   CCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGG                                                            <  SRR4302537.1404021/94‑1 (MQ=60)

                                    CGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGG                                                           <  SRR4302537.2039874/94‑1 (MQ=60)

                                    CGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGG                                                           <  SRR4302537.3995468/94‑1 (MQ=60)

                                     GGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGT                                                          >  SRR4302537.3527975/1‑94 (MQ=60)

                                     GGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGT                                                          >  SRR4302537.116009/1‑94 (MQ=60)

                                      GCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTT                                                         >  SRR4302537.4087772/1‑94 (MQ=60)

                                      GCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTT                                                         <  SRR4302537.1915833/94‑1 (MQ=60)

                                      GCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGAGCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTT                                                         <  SRR4302537.1959446/94‑1 (MQ=60)

                                       CAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTA                                                        <  SRR4302537.876509/94‑1 (MQ=60)

                                       CAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTA                                                        <  SRR4302537.3149349/94‑1 (MQ=60)

                                       CAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTA                                                        >  SRR4302537.2724281/1‑94 (MQ=60)

                                       CAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTA                                                        >  SRR4302537.2462699/1‑94 (MQ=60)

                                        AAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAC                                                       >  SRR4302537.4384257/1‑94 (MQ=60)

                                         AATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACTGGTTACC                                                      >  SRR4302537.3824040/1‑94 (MQ=60)

                                         AATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACC                                                      <  SRR4302537.215705/94‑1 (MQ=60)

                                          ATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTCATACGGGTTACCA                                                     <  SRR4302537.3511552/94‑1 (MQ=60)

                                           TAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAA                                                    >  SRR4302537.6403388/1‑94 (MQ=60)

                                            AGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAT                                                   >  SRR4302537.1490218/1‑94 (MQ=60)

                                             GCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATC                                                  >  SRR4302537.672451/1‑94 (MQ=60)

                                             GCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATC                                                  <  SRR4302537.102201/94‑1 (MQ=60)

                                                CCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAG                                               <  SRR4302537.4681170/94‑1 (MQ=60)

                                                 CTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGC                                              >  SRR4302537.4458651/1‑94 (MQ=60)

                                                 CTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGC                                              >  SRR4302537.2075955/1‑94 (MQ=60)

                                                 CTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGC                                              <  SRR4302537.6498323/94‑1 (MQ=60)

                                                 CTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGC                                              >  SRR4302537.1630028/1‑94 (MQ=60)

                                                   GGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGG                                            <  SRR4302537.1106702/94‑1 (MQ=60)

                                                    GCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGG                                           <  SRR4302537.4832077/94‑1 (MQ=60)

                                                     CTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGT                                          >  SRR4302537.1385443/1‑94 (MQ=60)

                                                     CTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGT                                          >  SRR4302537.55090/1‑94 (MQ=60)

                                                        ATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGT                                       >  SRR4302537.1731924/1‑94 (MQ=60)

                                                        ATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGT                                       >  SRR4302537.3633023/1‑94 (MQ=60)

                                                        ATAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGT                                       <  SRR4302537.3975733/94‑1 (MQ=60)

                                                         TAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTT                                      >  SRR4302537.5822406/1‑94 (MQ=60)

                                                         TAATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTT                                      >  SRR4302537.4141538/1‑94 (MQ=60)

                                                          AATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTT                                     >  SRR4302537.2717320/1‑94 (MQ=60)

                                                           ATTACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTC                                    <  SRR4302537.2408613/94‑1 (MQ=60)

                                                              ACTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTT                                 <  SRR4302537.4525590/94‑1 (MQ=60)

                                                               CTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTG                                <  SRR4302537.4361519/94‑1 (MQ=60)

                                                               CTGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTG                                >  SRR4302537.2346949/1‑94 (MQ=60)

                                                                TGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGA                               <  SRR4302537.1896539/94‑1 (MQ=60)

                                                                TGATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGA                               >  SRR4302537.5068782/1‑94 (MQ=60)

                                                                  ATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAC                             >  SRR4302537.4947760/1‑94 (MQ=60)

                                                                  ATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAC                             >  SRR4302537.180045/1‑94 (MQ=60)

                                                                  ATTACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAC                             >  SRR4302537.5758751/1‑94 (MQ=60)

                                                                    TCCCCACATGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGATTACCAATCCAGCGGGTAGTTTCTTTGAACTG                           <  SRR4302537.5918308/94‑1 (MQ=60)

                                                                     ACCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGC                          >  SRR4302537.285208/1‑94 (MQ=60)

                                                                      CCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCG                         <  SRR4302537.1983318/94‑1 (MQ=60)

                                                                      CCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCG                         >  SRR4302537.4681422/1‑94 (MQ=60)

                                                                      CCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCG                         <  SRR4302537.23955/94‑1 (MQ=60)

                                                                      CCCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCG                         <  SRR4302537.4126836/94‑1 (MQ=60)

                                                                       CCACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGG                        >  SRR4302537.4685516/1‑94 (MQ=60)

                                                                        CACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGA                       >  SRR4302537.5833536/1‑94 (MQ=60)

                                                                         ACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTGTACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGAT                      >  SRR4302537.1361294/1‑94 (MQ=60)

                                                                         ACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGAT                      <  SRR4302537.5987582/94‑1 (MQ=60)

                                                                         ACCTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGAT                      >  SRR4302537.1147859/1‑94 (MQ=60)

                                                                           CTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTC                    >  SRR4302537.1870172/1‑94 (MQ=60)

                                                                           CTGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTC                    >  SRR4302537.4861992/1‑94 (MQ=60)

                                                                            TGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCA                   >  SRR4302537.2646024/1‑94 (MQ=60)

                                                                            TGATCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCA                   <  SRR4302537.2007778/94‑1 (MQ=60)

                                                                               TCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCA                >  SRR4302537.3635353/1‑94 (MQ=60)

                                                                               TCGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGCTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCGCCA                <  SRR4302537.4589480/94‑1 (MQ=60)

                                                                                CGCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCAC               >  SRR4302537.1676854/1‑94 (MQ=60)

                                                                                 GCCATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACT              >  SRR4302537.4649963/1‑94 (MQ=60)

                                                                                   CATAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGA            >  SRR4302537.599102/1‑94 (MQ=60)

                                                                                     TAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAAC          <  SRR4302537.4819993/94‑1 (MQ=60)

                                                                                     TAGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAAC          <  SRR4302537.3782676/94‑1 (MQ=60)

                                                                                      AGGGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACG         >  SRR4302537.4085626/1‑94 (MQ=60)

                                                                                      AGGGAAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACG         >  SRR4302537.2304550/1‑94 (MQ=60)

                                                                                        GGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGG       <  SRR4302537.740169/94‑1 (MQ=60)

                                                                                        GGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGG       <  SRR4302537.4346483/94‑1 (MQ=60)

                                                                                        GGCAGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGG       <  SRR4302537.6147233/94‑1 (MQ=60)

                                                                                           AGCGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTG    >  SRR4302537.3412105/1‑94 (MQ=60)

                                                                                           AGCGTGTCGTAATCGATCAGTGCGCTTTTCTTATACGGGTTACCAATCCAGCGGGAAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTG    >  SRR4302537.343897/1‑94 (MQ=60)

                                                                                           AGAGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTG    <  SRR4302537.5598549/94‑1 (MQ=60)

                                                                                             CGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGA  <  SRR4302537.6418771/94‑1 (MQ=60)

                                                                                             CGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGA  <  SRR4302537.3325436/94‑1 (MQ=60)

                                                                                             CGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGA  <  SRR4302537.2860574/94‑1 (MQ=60)

TCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGA  >  NC_000913/4146051‑4146237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`