Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,149,965 |
A→G |
V238A (GTC→GCC) |
ppc ← |
phosphoenolpyruvate carboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,149,965 | 0 | A | G | 100.0%
| 711.7
/ NA
| 204 | V238A (GTC→GCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (107/97); total (107/97) |
Only 100 of 211 total aligned reads displayed.
AGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCAC > NC_000913/4149875‑4150053
|
aGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAATGGACCGGAACAAATTCGGCg < 2:6223743/93‑1 (MQ=255)
aGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCg > 1:6019890/1‑93 (MQ=255)
ggACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTcggcgg < 1:4364259/93‑1 (MQ=255)
gcGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGc < 1:6260838/92‑1 (MQ=255)
aCGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGc > 1:4560987/1‑93 (MQ=255)
cGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCTCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGcg > 2:1587486/1‑92 (MQ=255)
ggCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGtt < 1:3695921/93‑1 (MQ=255)
gCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGATCAAATTCGGCGGGCAGttt < 2:6307365/93‑1 (MQ=255)
gCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGttt < 1:2800582/93‑1 (MQ=255)
cGGGTGATACCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTg < 2:3320054/93‑1 (MQ=255)
gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGt > 1:100281/1‑93 (MQ=255)
gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGt > 2:5442361/1‑93 (MQ=255)
gggTGATATCGGCAGTGACGTGCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGt < 1:2765563/93‑1 (MQ=255)
ggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTa > 2:1702356/1‑93 (MQ=255)
gTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAg > 2:4840465/1‑93 (MQ=255)
tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc > 2:318022/1‑93 (MQ=255)
tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc > 2:2506416/1‑93 (MQ=255)
tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc > 1:2933204/1‑93 (MQ=255)
tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc < 1:3672651/93‑1 (MQ=255)
tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc > 2:2435819/1‑93 (MQ=255)
ggATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGc < 1:174695/92‑1 (MQ=255)
gATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGcc > 1:5222797/1‑93 (MQ=255)
atatCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCg > 2:4793769/1‑93 (MQ=255)
tatCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGa < 2:1420843/93‑1 (MQ=255)
tatCGGCAGTAACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAACCGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGa < 2:493634/93‑1 (MQ=255)
tCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTTGCCGCgg > 2:3429197/1‑93 (MQ=255)
tCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAgg < 2:6476703/93‑1 (MQ=255)
tCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTAGGCGGGCAGTTTGTAGCCgggg > 2:1176579/1‑93 (MQ=255)
ggCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAgggt > 1:1421897/1‑91 (MQ=255)
gCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtc < 1:2328851/93‑1 (MQ=255)
cAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGtct > 2:1374230/1‑93 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc < 2:2187421/93‑1 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc > 1:2236442/1‑93 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc < 2:4656246/93‑1 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc > 2:593673/1‑93 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc < 2:6319240/93‑1 (MQ=255)
aGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTtctc > 1:4194423/1‑93 (MQ=255)
gtgtCGGTCGGGTCGCCGTCGCGCTCGCCGCCCAGCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTctct < 2:929983/93‑1 (MQ=255)
gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCCCGAAGTAAAACGGACCGGAAAAAATTCGGCGGGCAGTTTGTAGCCGAGGTTctct > 2:1623708/1‑93 (MQ=255)
gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTctct < 2:2771689/93‑1 (MQ=255)
gACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTc < 2:4367734/93‑1 (MQ=255)
aCGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGTCTCTTcc > 2:5468549/1‑93 (MQ=255)
ttCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGACGTAAAACGGACCGGAACAAATTCGGCGGGCAGCTTGTAGCCGAGGTTCTCTTCCAgt > 2:1131244/1‑93 (MQ=255)
ttCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAgt > 2:2723185/1‑93 (MQ=255)
ggTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAgttgtt > 2:1755809/1‑93 (MQ=255)
ggTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAgttgtt < 2:2263448/93‑1 (MQ=255)
ttGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcg > 1:6157249/1‑93 (MQ=255)
ttGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcg > 1:2178905/1‑93 (MQ=255)
tGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcgt > 1:3114688/1‑93 (MQ=255)
gCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcgtt > 2:3548744/1‑93 (MQ=255)
ccGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcgttc < 2:6153373/93‑1 (MQ=255)
ccGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTgttcgttc > 1:2148219/1‑93 (MQ=255)
cGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCa < 2:568005/93‑1 (MQ=255)
gTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAg > 1:3997624/1‑93 (MQ=255)
gTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAg > 1:5373820/1‑93 (MQ=255)
ctCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAg < 1:4778950/92‑1 (MQ=255)
tCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGt > 2:945224/1‑93 (MQ=255)
tCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGt < 1:1667740/93‑1 (MQ=255)
tCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGt < 2:1025615/93‑1 (MQ=255)
tCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGt > 1:136385/1‑93 (MQ=255)
cgcgGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGtt < 2:5560071/93‑1 (MQ=255)
cgcgGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGtt < 1:2478864/93‑1 (MQ=255)
gcgGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTc < 2:5063552/93‑1 (MQ=255)
ggTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTcgc < 2:3798426/93‑1 (MQ=255)
cgccgcCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCa > 1:5111064/1‑93 (MQ=255)
gccgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAg < 2:1293731/93‑1 (MQ=255)
ccgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAgg < 2:6136147/93‑1 (MQ=255)
gccCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTa < 2:1900019/93‑1 (MQ=255)
gccCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTa < 2:6262716/93‑1 (MQ=255)
gccCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTa > 1:5736278/1‑93 (MQ=255)
cccATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCTGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTaa < 1:1647373/93‑1 (MQ=255)
cccATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTaa < 2:3870876/93‑1 (MQ=255)
ccATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAt > 1:4279625/1‑93 (MQ=255)
cATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAtt > 1:4987071/1‑93 (MQ=255)
cATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAtt < 2:5151930/93‑1 (MQ=255)
aTCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt > 1:4914984/1‑93 (MQ=255)
aTCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt < 2:1662367/93‑1 (MQ=255)
aTCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt > 1:2196684/1‑93 (MQ=255)
aTCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt > 2:3677811/1‑93 (MQ=255)
tCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTg > 2:4519990/1‑93 (MQ=255)
tCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTg > 1:6270085/1‑93 (MQ=255)
ccACGAAGTAAAACGAACCGGAACAAATTCGTCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTgg < 1:653145/93‑1 (MQ=255)
cACGAAGTAAAACGGACCGTAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGt > 1:5883858/1‑93 (MQ=255)
cACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGt > 1:1899460/1‑93 (MQ=255)
cACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCCTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGt > 1:749053/1‑93 (MQ=255)
aCGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTa < 2:766561/93‑1 (MQ=255)
aCGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTa < 1:5956019/93‑1 (MQ=255)
cGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGCGGGTCTCTTCCAGCTGTTCGTTCAGGTCGCGCAGGTAATTTGGTAc > 2:71661/1‑93 (MQ=255)
cGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTAc < 2:4087812/93‑1 (MQ=255)
aGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGcc > 1:3468707/1‑93 (MQ=255)
aGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGcc < 1:128176/93‑1 (MQ=255)
tAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGACGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCtt > 1:5461976/1‑93 (MQ=255)
aaaaCGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTg > 2:5308393/1‑93 (MQ=255)
ggACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCcaca > 2:2052775/1‑93 (MQ=255)
ccGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc > 1:2972217/1‑93 (MQ=255)
ccGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc > 1:1162524/1‑93 (MQ=255)
ccGAAACAAATTCGGCGGTCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc < 2:2317455/93‑1 (MQ=255)
ggAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGGACGCCTTGCCACAGGCTg > 1:244311/1‑93 (MQ=255)
aCAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGttt > 2:2872826/1‑93 (MQ=255)
aaaTTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTc > 1:1480465/1‑93 (MQ=255)
|
AGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCAC > NC_000913/4149875‑4150053
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGG > NC_000913/4149872‑4150058
|
AGCAGGAGGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGG < SRR4302537.4902540/94‑1 (MQ=60)
GCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGC < SRR4302537.177442/94‑1 (MQ=60)
GAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCG < SRR4302537.387133/94‑1 (MQ=60)
CAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCG > SRR4302537.6061247/1‑94 (MQ=60)
CAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCG > SRR4302537.1822405/1‑94 (MQ=60)
CAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAAAGGACCGGAACAAAATCGGCG > SRR4302537.1447962/1‑94 (MQ=60)
AGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGG < SRR4302537.4363666/94‑1 (MQ=60)
AGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGG < SRR4302537.711452/94‑1 (MQ=60)
GGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGG < SRR4302537.4394441/94‑1 (MQ=60)
GACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGC > SRR4302537.4592558/1‑94 (MQ=60)
GCGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCA < SRR4302537.6303822/94‑1 (MQ=60)
GGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTT < SRR4302537.3721931/94‑1 (MQ=60)
GGCGGGGGATATCGGCAGTGACGTTCGGGTTTCCGTCGCGGGCGCCGCCCATCCACGAAGTAAAAGGGACCGGAACAAATTCGCCGGGGGGTTT > SRR4302537.146067/1‑94 (MQ=60)
GCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTG < SRR4302537.2820157/94‑1 (MQ=60)
GCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTG < SRR4302537.2289264/94‑1 (MQ=60)
CGGGTTATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGT < SRR4302537.2043437/94‑1 (MQ=60)
CGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGT > SRR4302537.101003/1‑94 (MQ=60)
GGGTGATATCGGCAGTGACGTGCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTA < SRR4302537.2784886/94‑1 (MQ=60)
GTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGC > SRR4302537.2953803/1‑94 (MQ=60)
TGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCC < SRR4302537.3698492/94‑1 (MQ=60)
TGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCC > SRR4302537.5695532/1‑94 (MQ=60)
TGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCC < SRR4302537.6312583/94‑1 (MQ=60)
TGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCC > SRR4302537.5258716/1‑94 (MQ=60)
GGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCC < SRR4302537.175931/94‑1 (MQ=60)
ATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGA > SRR4302537.4323133/1‑94 (MQ=60)
TCTGCAGTGACGTGCGGGTTGCCGTCTCTGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGT < SRR4302537.2440098/94‑1 (MQ=60)
TCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGT < SRR4302537.1186307/94‑1 (MQ=60)
TCGGCAGTGACGTGCGGGTTGCCGTCGAGGGCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGT < SRR4302537.4839387/94‑1 (MQ=60)
CGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTT < SRR4302537.4042889/94‑1 (MQ=60)
CGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGT > SRR4302537.1431798/1‑94 (MQ=60)
GCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCT < SRR4302537.2345275/94‑1 (MQ=60)
GCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCT < SRR4302537.5140845/94‑1 (MQ=60)
CAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTC > SRR4302537.2252214/1‑94 (MQ=60)
CAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTC > SRR4302537.4223719/1‑94 (MQ=60)
ACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGCTCTCTTCCA > SRR4302537.1340053/1‑94 (MQ=60)
GTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGT > SRR4302537.1417075/1‑94 (MQ=60)
GTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGTCTCTTCCAGT > SRR4302537.5811772/1‑94 (MQ=60)
GGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTC < SRR4302537.3257586/94‑1 (MQ=60)
GGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTC < SRR4302537.1469447/94‑1 (MQ=60)
GTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCG > SRR4302537.2212905/1‑94 (MQ=60)
GTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCG < SRR4302537.2199476/94‑1 (MQ=60)
GTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCG > SRR4302537.2194262/1‑94 (MQ=60)
GTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCG > SRR4302537.6199624/1‑94 (MQ=60)
TTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGT > SRR4302537.3136442/1‑94 (MQ=60)
GCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTC > SRR4302537.2163363/1‑94 (MQ=60)
CCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCA > SRR4302537.5968160/1‑94 (MQ=60)
CCGGCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCA < SRR4302537.3071002/94‑1 (MQ=60)
CGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAG > SRR4302537.5410570/1‑94 (MQ=60)
CGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAG > SRR4302537.4025613/1‑94 (MQ=60)
CGCCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAG < SRR4302537.1643254/94‑1 (MQ=60)
GTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGT > SRR4302537.137360/1‑94 (MQ=60)
CTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGT < SRR4302537.4811944/94‑1 (MQ=60)
TCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTT < SRR4302537.1679424/94‑1 (MQ=60)
CGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTC < SRR4302537.2496289/94‑1 (MQ=60)
TCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCA > SRR4302537.5146285/1‑94 (MQ=60)
CGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTA > SRR4302537.5775554/1‑94 (MQ=60)
GCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAA < SRR4302537.6281769/94‑1 (MQ=60)
GCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAA > SRR4302537.2019345/1‑94 (MQ=60)
CCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCTGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAT < SRR4302537.1658909/94‑1 (MQ=60)
CCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAT > SRR4302537.4309374/1‑94 (MQ=60)
CCCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGCTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAT > SRR4302537.2188712/1‑94 (MQ=60)
CCATCCACGAAGTAAAACGGCCCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATT < SRR4302537.3585908/94‑1 (MQ=60)
CCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATT > SRR4302537.3921956/1‑94 (MQ=60)
CCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATT > SRR4302537.5291239/1‑94 (MQ=60)
CCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATT < SRR4302537.1685404/94‑1 (MQ=60)
CCATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATT > SRR4302537.5021440/1‑94 (MQ=60)
CATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTT > SRR4302537.2212163/1‑94 (MQ=60)
CATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTT > SRR4302537.4948904/1‑94 (MQ=60)
ATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTG > SRR4302537.6313115/1‑94 (MQ=60)
ATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTG > SRR4302537.6148400/1‑94 (MQ=60)
ATCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTG < SRR4302537.4804384/94‑1 (MQ=60)
TCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGG > SRR4302537.633350/1‑94 (MQ=60)
TCCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGG < SRR4302537.857059/94‑1 (MQ=60)
CCACGAAGTAAAACGGACCGTAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGT > SRR4302537.5924229/1‑94 (MQ=60)
CCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGT > SRR4302537.1912655/1‑94 (MQ=60)
CCACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCCTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGT > SRR4302537.754164/1‑94 (MQ=60)
CCACGAAGTAAAACGAACCGGAACAAATTCGTCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGT < SRR4302537.657597/94‑1 (MQ=60)
ACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTAC < SRR4302537.4280872/94‑1 (MQ=60)
ACGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTAC < SRR4302537.5996904/94‑1 (MQ=60)
CGAAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACG > SRR4302537.1661061/1‑94 (MQ=60)
AAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCC < SRR4302537.5217941/94‑1 (MQ=60)
AAGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCC > SRR4302537.3493244/1‑94 (MQ=60)
AGTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCT < SRR4302537.129090/94‑1 (MQ=60)
GTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTT > SRR4302537.2796169/1‑94 (MQ=60)
GTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTT > SRR4302537.3997919/1‑94 (MQ=60)
GTAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGACGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTT > SRR4302537.5499234/1‑94 (MQ=60)
TAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTG > SRR4302537.2572190/1‑94 (MQ=60)
TAAAACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTG > SRR4302537.370724/1‑94 (MQ=60)
AACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCA > SRR4302537.6020669/1‑94 (MQ=60)
AACGGACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCA < SRR4302537.2879237/94‑1 (MQ=60)
ACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGC > SRR4302537.2993042/1‑94 (MQ=60)
ACCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGC > SRR4302537.1170609/1‑94 (MQ=60)
CCGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCT > SRR4302537.2857788/1‑94 (MQ=60)
CGGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGGTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGGACGCCTTGCCACAGGCTG > SRR4302537.246042/1‑94 (MQ=60)
GGAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGT < SRR4302537.2978094/94‑1 (MQ=60)
GAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTT > SRR4302537.4958523/1‑94 (MQ=60)
GAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTT < SRR4302537.5637010/94‑1 (MQ=60)
GAACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGGTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGGT > SRR4302537.5460204/1‑94 (MQ=60)
AACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTT > SRR4302537.1093313/1‑94 (MQ=60)
ACAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTT > SRR4302537.918180/1‑94 (MQ=60)
CAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTC > SRR4302537.249273/1‑94 (MQ=60)
CAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTC > SRR4302537.1490761/1‑94 (MQ=60)
CAAATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGATCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTC > SRR4302537.4585429/1‑94 (MQ=60)
AATTCGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCA < SRR4302537.5471706/94‑1 (MQ=60)
CGGCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTAC < SRR4302537.5158882/94‑1 (MQ=60)
CGGCGGGCAGTTTGTAGCCGAGGTTCTCTTACAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTAC < SRR4302537.487212/94‑1 (MQ=60)
GCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGG > SRR4302537.1863123/1‑94 (MQ=60)
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AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGG > NC_000913/4149872‑4150058
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
