Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,182,613	A→G	Q1264R (CAG→CGG)	rpoB →	RNA polymerase beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,182,613	0	A	G	100.0%	819.4 / NA	235	Q1264R (CAG→CGG)	rpoB	RNA polymerase beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/108); total (127/108)

Only 100 of 241 total aligned reads displayed.

AACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTA  >  NC_000913/4182523‑4182702

aaCTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGt                                                                                         <  2:5253855/93‑1 (MQ=255)

 aCTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGtt                                                                                        <  1:2587500/93‑1 (MQ=255)

  cTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTc                                                                                       >  2:4322797/1‑93 (MQ=255)

   tGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCg                                                                                      >  1:293256/1‑93 (MQ=255)

   tGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCg                                                                                      >  2:4634827/1‑93 (MQ=255)

    gAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCgg                                                                                     <  1:5285542/93‑1 (MQ=255)

     aaCCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCggt                                                                                    <  1:3059362/93‑1 (MQ=255)

       ccgccTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCGGCTGGGTGGTAAGGCACGGTTCggtgg                                                                                  <  2:1437701/90‑1 (MQ=255)

       ccaccTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCggtgg                                                                                  <  2:1704716/93‑1 (MQ=255)

         cccTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTc                                                                                <  2:2898948/92‑1 (MQ=255)

         accTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTc                                                                                >  2:3046272/1‑93 (MQ=255)

         accTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTc                                                                                <  1:3740469/93‑1 (MQ=255)

         accTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTc                                                                                >  1:1536492/1‑93 (MQ=255)

          ccgggTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCa                                                                               <  2:1212921/90‑1 (MQ=255)

          ccTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCa                                                                               <  1:144686/93‑1 (MQ=255)

           cTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAg                                                                              >  1:3367657/1‑93 (MQ=255)

            tGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGc                                                                             >  1:4225456/1‑93 (MQ=255)

            tGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGc                                                                             >  1:2979862/1‑93 (MQ=255)

             ggTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCg                                                                            <  2:5980490/93‑1 (MQ=255)

              gTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGt                                                                           >  2:6146507/1‑93 (MQ=255)

               tCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGtt                                                                          >  1:3821171/1‑93 (MQ=255)

               tCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGtt                                                                          <  1:2543735/93‑1 (MQ=255)

                cgacgaCAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGttt                                                                         <  2:175448/93‑1 (MQ=255)

                 gacgacAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTc                                                                        <  1:2196565/93‑1 (MQ=255)

                    gacAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCggg                                                                     <  2:4444953/93‑1 (MQ=255)

                     acAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCgggg                                                                    >  1:2283782/1‑93 (MQ=255)

                      cAAGATGCACGCGCGTTCCACCGGTTCTTTCATCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGga                                                                   >  2:4940214/1‑93 (MQ=255)

                       aaGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGCCAGCGTTTCGGGgag                                                                  >  2:3337459/1‑93 (MQ=255)

                        aGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGgaga                                                                 <  1:5717587/93‑1 (MQ=255)

                          aTGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTGAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATg                                                               <  2:2388221/93‑1 (MQ=255)

                           tGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATgg                                                              >  2:2211831/1‑93 (MQ=255)

                              aCGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAg                                                           >  1:3276128/1‑93 (MQ=255)

                              aCGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAg                                                           <  2:1136866/93‑1 (MQ=255)

                               cgcgcgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAgt                                                          <  1:628997/93‑1 (MQ=255)

                                 cgcgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAgtgt                                                        <  2:3945864/93‑1 (MQ=255)

                                  gcgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGtgtg                                                       >  1:5416925/1‑93 (MQ=255)

                                  gcgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGtgtg                                                       <  2:5788083/93‑1 (MQ=255)

                                  gcgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGtgtg                                                       >  2:633822/1‑93 (MQ=255)

                                   cgTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTgg                                                      <  1:1092138/93‑1 (MQ=255)

                                    gTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTggg                                                     <  2:1089151/93‑1 (MQ=255)

                                    gTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTggg                                                     <  2:4344311/93‑1 (MQ=255)

                                     ttCCCCCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGCTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGgc                                                    >  2:3029080/1‑93 (MQ=255)

                                      tCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGgcg                                                   >  1:3131141/1‑93 (MQ=255)

                                       ccACCGGTTCTTACAGCCTGGTTTCTCAGCAGGCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGgcgc                                                  <  1:997806/93‑1 (MQ=255)

                                        cACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCt                                                 >  1:4897356/1‑93 (MQ=255)

                                          ccGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTgg                                               >  1:3625939/1‑93 (MQ=255)

                                           cGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGa                                              >  1:1994158/1‑93 (MQ=255)

                                           cGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAACGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGa                                              >  2:540941/1‑93 (MQ=255)

                                            ggTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGaa                                             <  2:5305008/93‑1 (MQ=255)

                                             gTTCTTACAGCCTGTTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAg                                            <  2:1871147/93‑1 (MQ=255)

                                             gTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAg                                            >  1:401701/1‑93 (MQ=255)

                                             gTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAg                                            <  2:3799654/93‑1 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGc                                           >  1:1816086/1‑93 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGc                                           >  1:2898709/1‑93 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGc                                           >  1:4033208/1‑93 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGc                                           >  1:5068915/1‑93 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGc                                           <  2:2118022/93‑1 (MQ=255)

                                              ttCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGCGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGGGCTGGAAGc                                           >  2:5504573/1‑93 (MQ=255)

                                               tCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCa                                          >  2:3470836/1‑93 (MQ=255)

                                               tCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCa                                          >  2:2769421/1‑93 (MQ=255)

                                                  tACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATAc                                       <  2:767041/93‑1 (MQ=255)

                                                  tACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATAc                                       <  1:4772836/93‑1 (MQ=255)

                                                   aCAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACg                                      <  2:256435/93‑1 (MQ=255)

                                                    cAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACgg                                     <  1:1930201/93‑1 (MQ=255)

                                                    cAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACgg                                     <  1:6428896/93‑1 (MQ=255)

                                                     aGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGgc                                    >  1:347476/1‑93 (MQ=255)

                                                      gCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGgcg                                   <  1:2765944/93‑1 (MQ=255)

                                                      gCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGgcg                                   >  2:5693674/1‑93 (MQ=255)

                                                       ccTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGgcgc                                  <  1:4519113/93‑1 (MQ=255)

                                                         tGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCgcag                                >  2:1947890/1‑93 (MQ=255)

                                                          ggTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCgcagc                               >  1:6202999/1‑93 (MQ=255)

                                                          ggTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCgcagc                               >  2:3886594/1‑93 (MQ=255)

                                                            ttACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCAt                             >  2:3160302/1‑93 (MQ=255)

                                                            ttACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCAt                             <  2:3520709/93‑1 (MQ=255)

                                                              aCTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATac                           >  1:2105324/1‑93 (MQ=255)

                                                               cTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATaca                          <  2:6409581/93‑1 (MQ=255)

                                                                tCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATacac                         >  2:1632578/1‑93 (MQ=255)

                                                                tCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATacac                         >  1:1659269/1‑93 (MQ=255)

                                                                 cagcagCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACAcc                        <  2:3318713/93‑1 (MQ=255)

                                                                  agcagcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACAccc                       <  2:624456/93‑1 (MQ=255)

                                                                  agcagcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACAccc                       <  1:1294806/93‑1 (MQ=255)

                                                                   gcagcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCt                      <  2:2737326/93‑1 (MQ=255)

                                                                   gcagcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCt                      <  1:4687151/93‑1 (MQ=255)

                                                                      gcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCa                   <  2:2510633/93‑1 (MQ=255)

                                                                      gcCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCa                   >  1:4379654/1‑93 (MQ=255)

                                                                        cGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAgg                 >  1:3161542/1‑93 (MQ=255)

                                                                         gCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGa                >  2:2287294/1‑93 (MQ=255)

                                                                            gggTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAAt             <  1:2354945/93‑1 (MQ=255)

                                                                            gggTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAAt             >  1:5403947/1‑93 (MQ=255)

                                                                               tggtAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCt          >  2:6063166/1‑93 (MQ=255)

                                                                                ggtAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATCCGGCGAAGCATACACTCTGCAGGAAATGCTc         >  1:497632/1‑93 (MQ=255)

                                                                                ggtAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTc         >  1:1326555/1‑93 (MQ=255)

                                                                                 gtAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCa        >  2:886319/1‑93 (MQ=255)

                                                                                 gtAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCa        <  2:202494/93‑1 (MQ=255)

                                                                                  tAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCAc       <  1:6117682/93‑1 (MQ=255)

                                                                                    aGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCg     >  2:6209022/1‑93 (MQ=255)

                                                                                     ggCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGt    >  2:5801767/1‑93 (MQ=255)

                                                                                     ggCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGt    >  1:3877556/1‑93 (MQ=255)

                                                                                      gCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGtt   <  1:5685534/93‑1 (MQ=255)

                                                                                       cacgGTTCGGTGGGCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGTAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTa  <  1:6167443/93‑1 (MQ=255)

AACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTA  >  NC_000913/4182523‑4182702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGAAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAAGT  >  NC_000913/4182520‑4182705

TGAAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACG                                                                                              <  SRR4302537.942195/94‑1 (MQ=60)

TGAAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACG                                                                                              >  SRR4302537.195373/1‑94 (MQ=60)

  AAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGT                                                                                            >  SRR4302537.1669329/1‑94 (MQ=60)

    ACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTC                                                                                          <  SRR4302537.2605607/94‑1 (MQ=60)

     CTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCG                                                                                         >  SRR4302537.295299/1‑94 (MQ=60)

      TGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGG                                                                                        <  SRR4302537.4957135/94‑1 (MQ=60)

      TGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGG                                                                                        >  SRR4302537.3877603/1‑94 (MQ=60)

       GAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGT                                                                                       <  SRR4302537.5321886/94‑1 (MQ=60)

       GAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGT                                                                                       <  SRR4302537.81428/94‑1 (MQ=60)

        AACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTG                                                                                      <  SRR4302537.3080677/94‑1 (MQ=60)

        AACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTG                                                                                      <  SRR4302537.3791142/94‑1 (MQ=60)

           CACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTC                                                                                   >  SRR4302537.1547223/1‑94 (MQ=60)

            CCCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCA                                                                                  <  SRR4302537.4439154/94‑1 (MQ=60)

            ACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCA                                                                                  <  SRR4302537.3766739/94‑1 (MQ=60)

             CCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAG                                                                                 <  SRR4302537.145716/94‑1 (MQ=60)

             CCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAG                                                                                 >  SRR4302537.3391514/1‑94 (MQ=60)

             CCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAG                                                                                 >  SRR4302537.5069136/1‑94 (MQ=60)

              CTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGC                                                                                >  SRR4302537.4254889/1‑94 (MQ=60)

              CTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGC                                                                                >  SRR4302537.3000710/1‑94 (MQ=60)

              CTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGC                                                                                >  SRR4302537.54451/1‑94 (MQ=60)

               TGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCG                                                                               >  SRR4302537.4058017/1‑94 (MQ=60)

                GGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGT                                                                              >  SRR4302537.5938436/1‑94 (MQ=60)

                 GTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTT                                                                             >  SRR4302537.498930/1‑94 (MQ=60)

                 GTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTT                                                                             >  SRR4302537.3847964/1‑94 (MQ=60)

                  TCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTT                                                                            <  SRR4302537.2561562/94‑1 (MQ=60)

                   CGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTC                                                                           >  SRR4302537.3228885/1‑94 (MQ=60)

                   CGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTC                                                                           <  SRR4302537.6401490/94‑1 (MQ=60)

                    GACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGTGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCG                                                                          <  SRR4302537.4024175/94‑1 (MQ=60)

                    GACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCG                                                                          >  SRR4302537.245845/1‑94 (MQ=60)

                    GACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCG                                                                          >  SRR4302537.2143721/1‑94 (MQ=60)

                    GACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCG                                                                          <  SRR4302537.3824975/94‑1 (MQ=60)

                    GACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCG                                                                          <  SRR4302537.2212043/94‑1 (MQ=60)

                       GACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGG                                                                       >  SRR4302537.2299894/1‑94 (MQ=60)

                       GACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGG                                                                       <  SRR4302537.3086351/94‑1 (MQ=60)

                        ACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGA                                                                      <  SRR4302537.1336650/94‑1 (MQ=60)

                           AGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGAT                                                                   >  SRR4302537.554341/1‑94 (MQ=60)

                           AGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGAT                                                                   <  SRR4302537.5756719/94‑1 (MQ=60)

                            GATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATG                                                                  <  SRR4302537.2579995/94‑1 (MQ=60)

                            GATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATG                                                                  <  SRR4302537.3160200/94‑1 (MQ=60)

                             ATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGCTGG                                                                 >  SRR4302537.2941635/1‑94 (MQ=60)

                                CACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAG                                                              >  SRR4302537.5148277/1‑94 (MQ=60)

                                CACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAG                                                              >  SRR4302537.3299246/1‑94 (MQ=60)

                                 ACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGT                                                             <  SRR4302537.5907201/94‑1 (MQ=60)

                                  CGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTG                                                            <  SRR4302537.633278/94‑1 (MQ=60)

                                    CGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTG                                                          >  SRR4302537.5453852/1‑94 (MQ=60)

                                      CGTTCCCCCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGG                                                        <  SRR4302537.4687534/94‑1 (MQ=60)

                                      CGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGG                                                        <  SRR4302537.1099680/94‑1 (MQ=60)

                                      CGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGG                                                        <  SRR4302537.1378641/94‑1 (MQ=60)

                                       GTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGC                                                       >  SRR4302537.3552844/1‑94 (MQ=60)

                                       GTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGC                                                       >  SRR4302537.3423937/1‑94 (MQ=60)

                                        TTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTTGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCG                                                      <  SRR4302537.1969181/94‑1 (MQ=60)

                                        TTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCG                                                      >  SRR4302537.3153101/1‑94 (MQ=60)

                                        TTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCG                                                      <  SRR4302537.1173152/94‑1 (MQ=60)

                                          CCACCGGTTCTTACAGCCTGGTTTCTCAGCAGGCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCT                                                    <  SRR4302537.1004689/94‑1 (MQ=60)

                                          CCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCT                                                    >  SRR4302537.4931165/1‑94 (MQ=60)

                                            ACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGG                                                  <  SRR4302537.5330529/94‑1 (MQ=60)

                                            ACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGG                                                  >  SRR4302537.3651499/1‑94 (MQ=60)

                                             CCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGA                                                 >  SRR4302537.2008022/1‑94 (MQ=60)

                                             CCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGA                                                 <  SRR4302537.1744691/94‑1 (MQ=60)

                                             CCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGA                                                 >  SRR4302537.4866904/1‑94 (MQ=60)

                                              CGNTNCNTACAGCCTGGTTACTNAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAA                                                <  SRR4302537.2434532/94‑1 (MQ=60)

                                              CGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAA                                                >  SRR4302537.2970634/1‑94 (MQ=60)

                                               GGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAG                                               >  SRR4302537.6266350/1‑94 (MQ=60)

                                               GGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAG                                               >  SRR4302537.404484/1‑94 (MQ=60)

                                               GGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAG                                               <  SRR4302537.4756839/94‑1 (MQ=60)

                                               GGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAG                                               >  SRR4302537.2470018/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.1982149/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.4061435/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.5103809/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.1828746/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.2919077/1‑94 (MQ=60)

                                                GTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGC                                              >  SRR4302537.3134034/1‑94 (MQ=60)

                                                   CTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATA                                           >  SRR4302537.1323109/1‑94 (MQ=60)

                                                    TTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTC‑GGGAGATGGAAGGGTGGGCGCTGGAAGCATACG                                         >  SRR4302537.1507335/1‑94 (MQ=60)

                                                     TACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACG                                         <  SRR4302537.4805789/94‑1 (MQ=60)

                                                     TACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACG                                         <  SRR4302537.4395531/94‑1 (MQ=60)

                                                     TACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACG                                         <  SRR4302537.4106121/94‑1 (MQ=60)

                                                      ACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGG                                        <  SRR4302537.301624/94‑1 (MQ=60)

                                                       CAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGC                                       >  SRR4302537.2982807/1‑94 (MQ=60)

                                                       CAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGC                                       <  SRR4302537.6472577/94‑1 (MQ=60)

                                                       CAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGC                                       <  SRR4302537.1590009/94‑1 (MQ=60)

                                                       CAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGC                                       >  SRR4302537.349890/1‑94 (MQ=60)

                                                       CAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGC                                       <  SRR4302537.1943597/94‑1 (MQ=60)

                                                         GCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGC                                     <  SRR4302537.2785273/94‑1 (MQ=60)

                                                          CCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCA                                    <  SRR4302537.4350421/94‑1 (MQ=60)

                                                          CCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCA                                    <  SRR4302537.4550372/94‑1 (MQ=60)

                                                           CTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAG                                   >  SRR4302537.5698385/1‑94 (MQ=60)

                                                           CTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAG                                   >  SRR4302537.2695368/1‑94 (MQ=60)

                                                            TGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGC                                  >  SRR4302537.6245752/1‑94 (MQ=60)

                                                             GGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCA                                 <  SRR4302537.6188511/94‑1 (MQ=60)

                                                             GGTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCA                                 >  SRR4302537.3346950/1‑94 (MQ=60)

                                                              GTTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCAT                                <  SRR4302537.2182050/94‑1 (MQ=60)

                                                               TTACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGGATACGGCGCAGCATA                               >  SRR4302537.1876896/1‑94 (MQ=60)

                                                                TACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATAC                              >  SRR4302537.2120164/1‑94 (MQ=60)

                                                                 ACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACA                             >  SRR4302537.2083731/1‑94 (MQ=60)

                                                                 ACTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACA                             <  SRR4302537.4755369/94‑1 (MQ=60)

                                                                  CTCAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACAC                            >  SRR4302537.1670901/1‑94 (MQ=60)

                                                                    CAGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCC                          <  SRR4302537.664254/94‑1 (MQ=60)

                                                                     AGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCT                         <  SRR4302537.3602613/94‑1 (MQ=60)

                                                                     AGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCT                         <  SRR4302537.1303810/94‑1 (MQ=60)

                                                                     AGCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCT                         <  SRR4302537.6308900/94‑1 (MQ=60)

                                                                      GCAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTG                        <  SRR4302537.4719577/94‑1 (MQ=60)

                                                                       CAGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGC                       >  SRR4302537.2890916/1‑94 (MQ=60)

                                                                        AGCCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCA                      >  SRR4302537.4409883/1‑94 (MQ=60)

                                                                          CCGCTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGG                    >  SRR4302537.3183734/1‑94 (MQ=60)

                                                                             CTGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAA                 >  SRR4302537.2772824/1‑94 (MQ=60)

                                                                              TGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAAT                >  SRR4302537.5440817/1‑94 (MQ=60)

                                                                              TGGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAAT                <  SRR4302537.2267970/94‑1 (MQ=60)

                                                                               GGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATG               <  SRR4302537.2371549/94‑1 (MQ=60)

                                                                               GGGTGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATG               <  SRR4302537.5731883/94‑1 (MQ=60)

                                                                                  TGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATCCGGCGAAGCATACACTCTGCAGGAAATGCTC            >  SRR4302537.501054/1‑94 (MQ=60)

                                                                                  TGGTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTC            >  SRR4302537.1335801/1‑94 (MQ=60)

                                                                                    GTAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCAC          >  SRR4302537.2367238/1‑94 (MQ=60)

                                                                                     TAAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACC         <  SRR4302537.6159727/94‑1 (MQ=60)

                                                                                      AAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCG        <  SRR4302537.4055794/94‑1 (MQ=60)

                                                                                      AAGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCG        >  SRR4302537.3239142/1‑94 (MQ=60)

                                                                                       AGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGT       <  SRR4302537.3751492/94‑1 (MQ=60)

                                                                                       AGGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGT       >  SRR4302537.3904677/1‑94 (MQ=60)

                                                                                        GGCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTT      <  SRR4302537.5343562/94‑1 (MQ=60)

                                                                                         GCACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTA     <  SRR4302537.5724422/94‑1 (MQ=60)

                                                                                          CACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAA    <  SRR4302537.6209905/94‑1 (MQ=60)

                                                                                          CACGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAA    >  SRR4302537.5096177/1‑94 (MQ=60)

                                                                                          CACGGTTCGGTGGGCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGTAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAA    <  SRR4302537.6209904/94‑1 (MQ=60)

                                                                                            CGGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAAGT  >  SRR4302537.2729156/1‑94 (MQ=60)

TGAAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCATACGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAAGT  >  NC_000913/4182520‑4182705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`