Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,257,891 |
A→G |
intergenic (‑309/‑9) |
b4046 ← / → yjbL |
putative regulator/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,257,891 | 0 | A | G | 94.5%
| 454.7
/ 10.3
| 145 | intergenic (‑309/‑9) | b4046/yjbL | putative regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (4/4); new base G (59/78); total (63/82) |
| Fisher's exact test for biased strand distribution p-value = 7.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 |
Only 100 of 148 total aligned reads displayed.
ATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAA > NC_000913/4257802‑4257982
|
aTACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGAt > 1:4244628/1‑93 (MQ=255)
aTACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGAt < 1:2611203/93‑1 (MQ=255)
tACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATg < 1:5798164/93‑1 (MQ=255)
ccTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGaa > 2:5402611/1‑93 (MQ=255)
cTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAAt > 2:2681743/1‑93 (MQ=255)
cTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAAt > 1:5683572/1‑93 (MQ=255)
cTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAAt > 1:2529946/1‑93 (MQ=255)
tGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATc < 2:5834285/93‑1 (MQ=255)
tGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATc > 1:5096280/1‑93 (MQ=255)
tGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATc < 2:6394211/93‑1 (MQ=255)
tGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGAGGATGAATc > 1:3838335/1‑93 (MQ=255)
tAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCAt < 2:661325/93‑1 (MQ=255)
gTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGt < 2:4512512/93‑1 (MQ=255)
gTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGt > 2:4905454/1‑93 (MQ=255)
gTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGt > 2:6478219/1‑93 (MQ=255)
gTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGt > 1:3076906/1‑93 (MQ=255)
gTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGt > 2:237403/1‑93 (MQ=255)
ttCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGtt > 1:2710189/1‑93 (MQ=255)
ttCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGtt < 1:3342309/93‑1 (MQ=255)
aGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGaa < 1:3000812/93‑1 (MQ=255)
aGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGaa < 2:3401045/93‑1 (MQ=255)
gAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAg > 1:5025341/1‑93 (MQ=255)
aaaTTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGa < 2:445588/93‑1 (MQ=255)
aaTTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGat < 2:3054532/93‑1 (MQ=255)
ttATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGataa < 1:4816159/93‑1 (MQ=255)
tATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGataat < 1:4497787/93‑1 (MQ=255)
tATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGataat < 1:3374403/93‑1 (MQ=255)
tATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGataat > 1:6379659/1‑93 (MQ=255)
aTGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGataata < 1:2532031/93‑1 (MQ=255)
tGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATAc < 2:6133019/93‑1 (MQ=255)
gAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATAcc > 2:4114551/1‑93 (MQ=255)
aGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATAccc > 1:485973/1‑93 (MQ=255)
cGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCgg > 1:4582071/1‑93 (MQ=255)
cGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGAGGATGAATCATGTTGAAGATAATACCCgg > 1:599639/1‑93 (MQ=255)
gATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGt < 1:3522067/93‑1 (MQ=255)
gATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGt > 1:2071001/1‑93 (MQ=255)
gATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGt < 1:2006030/93‑1 (MQ=255)
gATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGt > 2:599915/1‑93 (MQ=255)
tGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACt > 2:3889402/1‑93 (MQ=255)
gATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTg > 1:5469785/1‑93 (MQ=255)
gATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTg < 1:1664736/93‑1 (MQ=255)
gATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTg < 1:5802100/93‑1 (MQ=255)
gATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTg < 1:6212707/93‑1 (MQ=255)
aTAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTgg > 2:1604557/1‑93 (MQ=255)
gTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATa > 1:5698089/1‑93 (MQ=255)
tGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATAc > 2:1186519/1‑93 (MQ=255)
aCCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACtt < 2:4961312/93‑1 (MQ=255)
aCCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACtt < 1:5848269/93‑1 (MQ=255)
ccAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACttt < 1:3895595/93‑1 (MQ=255)
ccAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACttt < 1:6200882/93‑1 (MQ=255)
aGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTtaa < 2:1719823/93‑1 (MQ=255)
gATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTtaat < 2:6366052/93‑1 (MQ=255)
gATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTtaat > 2:6073938/1‑93 (MQ=255)
ggCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATaaa > 2:3797218/1‑93 (MQ=255)
gCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATaaaa < 2:3671076/93‑1 (MQ=255)
aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAaca > 2:810215/1‑93 (MQ=255)
aaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAacac < 1:2305175/93‑1 (MQ=255)
aaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAacac < 1:4625782/93‑1 (MQ=255)
aaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACt > 2:3195338/1‑93 (MQ=255)
aGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTc > 1:1910628/1‑93 (MQ=255)
gAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCa < 1:2295952/93‑1 (MQ=255)
aTTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAt < 2:5125887/93‑1 (MQ=255)
aTTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAt > 1:3131549/1‑93 (MQ=255)
aTTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAt < 1:2120435/93‑1 (MQ=255)
ttATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAtt < 2:4270865/93‑1 (MQ=255)
ataAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCa > 1:1790836/1‑93 (MQ=255)
aaGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCaaa < 1:1321625/93‑1 (MQ=255)
aaGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCaaa < 2:6141393/93‑1 (MQ=255)
gaCACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATTCCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAAtt < 2:4008385/93‑1 (MQ=255)
gaCACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAAtt < 2:3004435/93‑1 (MQ=255)
gaCACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAAtt < 2:4022934/93‑1 (MQ=255)
cacGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCg > 1:904322/1‑93 (MQ=255)
cacGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCg < 1:3582368/93‑1 (MQ=255)
actgTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGa < 2:361490/90‑1 (MQ=255)
ggTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATa > 1:4421117/1‑93 (MQ=255)
ggTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATa < 2:5331722/93‑1 (MQ=255)
ggTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATa < 2:3822760/93‑1 (MQ=255)
gTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATaa > 2:3336296/1‑93 (MQ=255)
gTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATaa > 1:5460387/1‑93 (MQ=255)
gTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATaa < 2:5706557/93‑1 (MQ=255)
tACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAAt > 1:1864832/1‑93 (MQ=255)
cGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGa < 2:5139341/93‑1 (MQ=255)
gACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGaa < 2:1951998/93‑1 (MQ=255)
gACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGaa < 1:6426424/93‑1 (MQ=255)
gACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGaa < 1:670498/93‑1 (MQ=255)
gACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGaa > 1:3523862/1‑93 (MQ=255)
aCAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAg < 1:912950/93‑1 (MQ=255)
aCAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAg > 1:3001204/1‑93 (MQ=255)
cAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGa < 2:833511/93‑1 (MQ=255)
cAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGa < 1:2678702/93‑1 (MQ=255)
cAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGa < 1:2650619/93‑1 (MQ=255)
aaaaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATACAACACTCAATTCAAATCAATTCGATAATGAAGAt > 1:4007846/1‑93 (MQ=255)
aaaaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGAt < 2:3445782/93‑1 (MQ=255)
aaaaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGAt > 1:6385247/1‑93 (MQ=255)
aaaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATg < 1:4003953/93‑1 (MQ=255)
aaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGc < 2:1215429/93‑1 (MQ=255)
aaaaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGc < 1:79498/93‑1 (MQ=255)
aaGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCaa < 1:4202032/93‑1 (MQ=255)
aGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAAt > 1:1528158/1‑93 (MQ=255)
ggTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATc > 2:3573083/1‑93 (MQ=255)
|
ATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAA > NC_000913/4257802‑4257982
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGCATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAA > NC_000913/4257798‑4257983
|
ACGCATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTG > SRR4302537.2070827/1‑94 (MQ=60)
GCATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGA < SRR4302537.961164/94‑1 (MQ=60)
CATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGAT > SRR4302537.4274130/1‑94 (MQ=60)
ATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATG < SRR4302537.2629470/94‑1 (MQ=60)
TACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGA < SRR4302537.5837915/94‑1 (MQ=60)
CCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAAT > SRR4302537.2547697/1‑94 (MQ=60)
CCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAAT > SRR4302537.5722445/1‑94 (MQ=60)
CTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATC > SRR4302537.5131375/1‑94 (MQ=60)
CTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGAGGATGAATC > SRR4302537.3865225/1‑94 (MQ=60)
GTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCAT > SRR4302537.5820943/1‑94 (MQ=60)
AGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGT < SRR4302537.35375/94‑1 (MQ=60)
AGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGT > SRR4302537.3098340/1‑94 (MQ=60)
GTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTT > SRR4302537.2729115/1‑94 (MQ=60)
GTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTT > SRR4302537.2230535/1‑94 (MQ=60)
TTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTG < SRR4302537.3365973/94‑1 (MQ=60)
CAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAA > SRR4302537.2550369/1‑94 (MQ=60)
AGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAG > SRR4302537.5059951/1‑94 (MQ=60)
AGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAG < SRR4302537.3021724/94‑1 (MQ=60)
ATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAA > SRR4302537.5869760/1‑94 (MQ=60)
ATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAA > SRR4302537.5016875/1‑94 (MQ=60)
TTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAAT < SRR4302537.4016177/94‑1 (MQ=60)
TTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAAT > SRR4302537.4126118/1‑94 (MQ=60)
TTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAAT < SRR4302537.4849402/94‑1 (MQ=60)
TTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAAT > SRR4302537.6423153/1‑94 (MQ=60)
TATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATA < SRR4302537.3398316/94‑1 (MQ=60)
TATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATA < SRR4302537.4528899/94‑1 (MQ=60)
ATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATAC < SRR4302537.2549797/94‑1 (MQ=60)
GAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCC > SRR4302537.489309/1‑94 (MQ=60)
AGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCG < SRR4302537.176177/94‑1 (MQ=60)
GCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGG > SRR4302537.4613766/1‑94 (MQ=60)
GCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGAGGATGAATCATGTTGAAGATAATACCCGG > SRR4302537.603739/1‑94 (MQ=60)
CGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGT > SRR4302537.2085587/1‑94 (MQ=60)
GATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTG < SRR4302537.3546981/94‑1 (MQ=60)
GATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTG < SRR4302537.2020000/94‑1 (MQ=60)
ATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGC > SRR4302537.2381843/1‑94 (MQ=60)
TGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTG > SRR4302537.5507095/1‑94 (MQ=60)
GATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGG > SRR4302537.671662/1‑94 (MQ=60)
GATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGG < SRR4302537.5841880/94‑1 (MQ=60)
GATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGG > SRR4302537.3599230/1‑94 (MQ=60)
GATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGG < SRR4302537.6255500/94‑1 (MQ=60)
GATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGG < SRR4302537.1676401/94‑1 (MQ=60)
TAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGAT < SRR4302537.4396404/94‑1 (MQ=60)
AGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATA > SRR4302537.5737085/1‑94 (MQ=60)
ACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTT < SRR4302537.5888370/94‑1 (MQ=60)
CCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTA < SRR4302537.3922827/94‑1 (MQ=60)
CCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTA < SRR4302537.6243617/94‑1 (MQ=60)
CAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAA > SRR4302537.5636026/1‑94 (MQ=60)
ATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAA > SRR4302537.4554891/1‑94 (MQ=60)
AAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACAC > SRR4302537.971005/1‑94 (MQ=60)
AAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACT < SRR4302537.4657788/94‑1 (MQ=60)
AAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACT < SRR4302537.2321444/94‑1 (MQ=60)
AAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTC > SRR4302537.1923891/1‑94 (MQ=60)
GAATTATAAGGAGGACACTGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATGCCCGGTGCAACTGGATACTTTAATAAAACACTCAA < SRR4302537.1882446/94‑1 (MQ=60)
GAATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAA < SRR4302537.2312156/94‑1 (MQ=60)
AATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAT > SRR4302537.3153515/1‑94 (MQ=60)
AATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAAT < SRR4302537.865299/94‑1 (MQ=60)
ATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATT > SRR4302537.2744799/1‑94 (MQ=60)
ATTATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATT < SRR4302537.2135357/94‑1 (MQ=60)
TATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCA > SRR4302537.1803340/1‑94 (MQ=60)
TATAAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCA > SRR4302537.5436863/1‑94 (MQ=60)
AAGGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAAT < SRR4302537.1330837/94‑1 (MQ=60)
AGAGGACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCA < SRR4302537.2029564/94‑1 (MQ=60)
GANGACACGGTACGACAAAAAANGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAA < SRR4302537.4804992/94‑1 (MQ=60)
ACACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCG > SRR4302537.910563/1‑94 (MQ=60)
CACGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGA < SRR4302537.3607621/94‑1 (MQ=60)
CGGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATA > SRR4302537.4451642/1‑94 (MQ=60)
GGTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAA > SRR4302537.5497634/1‑94 (MQ=60)
GTACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAAT > SRR4302537.1877819/1‑94 (MQ=60)
TACGACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATG < SRR4302537.2688908/94‑1 (MQ=60)
CGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAA > SRR4302537.3548791/1‑94 (MQ=60)
GACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAG > SRR4302537.3022118/1‑94 (MQ=60)
GACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAG < SRR4302537.6470093/94‑1 (MQ=60)
GACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAG < SRR4302537.675081/94‑1 (MQ=60)
ACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGA < SRR4302537.919249/94‑1 (MQ=60)
ACAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGA < SRR4302537.3049505/94‑1 (MQ=60)
CAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATACAACACTCAATTCAAATCAATTCGATAATGAAGAT > SRR4302537.4035901/1‑94 (MQ=60)
CAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGAT > SRR4302537.6428764/1‑94 (MQ=60)
CAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGAT < SRR4302537.2697407/94‑1 (MQ=60)
CAAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGAT < SRR4302537.2669161/94‑1 (MQ=60)
AAAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATG < SRR4302537.6325694/94‑1 (MQ=60)
AAAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGC < SRR4302537.4031979/94‑1 (MQ=60)
AAAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCA < SRR4302537.80081/94‑1 (MQ=60)
AAAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAA < SRR4302537.3181018/94‑1 (MQ=60)
AAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAAT < SRR4302537.4231367/94‑1 (MQ=60)
AAGGTGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAAT > SRR4302537.1538836/1‑94 (MQ=60)
TGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAA > SRR4302537.621969/1‑94 (MQ=60)
TGGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAA > SRR4302537.2199202/1‑94 (MQ=60)
TAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAA < SRR4302537.6130167/94‑1 (MQ=60)
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ACGCATACCTGTAGTTCAGAAATTATGAGCGATTTTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAA > NC_000913/4257798‑4257983
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
