Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,266,879 A→G intergenic (+993/‑114) tyrB → / → aphA tyrosine aminotransferase/diadenosine tetraphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,266,8790AG100.0% 873.1 / NA 246intergenic (+993/‑114)tyrB/aphAtyrosine aminotransferase/diadenosine tetraphosphatase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (135/111);  total (135/111)

Only 100 of 264 total aligned reads displayed.

GTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCACAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAA  >  NC_000913/4266789‑4266968
                                                                                          |                                                                                         
gTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATcgca                                                                                         >  1:5517220/1‑93 (MQ=255)
gTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATcgca                                                                                         >  1:4923680/1‑93 (MQ=255)
 tATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCaa                                                                                        <  1:5350991/93‑1 (MQ=255)
  ttCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCaaa                                                                                       <  1:3100846/92‑1 (MQ=255)
  aTCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCaaa                                                                                       >  1:3308016/1‑93 (MQ=255)
   tCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCaaaa                                                                                      <  2:5820067/93‑1 (MQ=255)
     cTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAAc                                                                                    <  2:1888360/93‑1 (MQ=255)
     cTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAAc                                                                                    <  1:2385224/93‑1 (MQ=255)
      ttACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAAcc                                                                                   <  1:5639601/93‑1 (MQ=255)
      ttACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAAcc                                                                                   >  1:3419709/1‑93 (MQ=255)
         cATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCa                                                                                <  2:5567443/93‑1 (MQ=255)
         cATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCa                                                                                >  1:2539140/1‑93 (MQ=255)
          aTCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAg                                                                               >  2:5273830/1‑93 (MQ=255)
           tCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGa                                                                              <  1:5789584/93‑1 (MQ=255)
           tCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGa                                                                              >  1:3895184/1‑93 (MQ=255)
           tCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGa                                                                              >  2:711660/1‑93 (MQ=255)
            cGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGAt                                                                             >  2:5346072/1‑93 (MQ=255)
            cGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGAt                                                                             <  2:605563/93‑1 (MQ=255)
             gAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACTGCAGATa                                                                            >  2:4163918/1‑93 (MQ=255)
             gAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATa                                                                            >  2:3718081/1‑93 (MQ=255)
              aGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGTGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATaa                                                                           <  1:5111817/93‑1 (MQ=255)
              aGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATaa                                                                           <  1:6445555/93‑1 (MQ=255)
               gTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAt                                                                          <  2:1713539/93‑1 (MQ=255)
               gTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAt                                                                          >  1:2018363/1‑93 (MQ=255)
                taataaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtc                                                                         <  1:3635077/93‑1 (MQ=255)
                 aataaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtcc                                                                        >  1:5440174/1‑93 (MQ=255)
                 aataaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtcc                                                                        >  1:3245339/1‑93 (MQ=255)
                 aataaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtcc                                                                        <  2:3490419/93‑1 (MQ=255)
                  ataaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtcct                                                                       >  2:506883/1‑93 (MQ=255)
                   taaACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtcctt                                                                      >  1:875060/1‑93 (MQ=255)
                    aaaCATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtccttc                                                                     <  2:3919550/93‑1 (MQ=255)
                     aaCATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAtccttcc                                                                    <  2:885972/93‑1 (MQ=255)
                       cATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATccttcctt                                                                  <  2:5639561/93‑1 (MQ=255)
                        aTTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCttt                                                                 <  2:2892275/93‑1 (MQ=255)
                          tttttATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTcc                                                               >  1:2272903/1‑93 (MQ=255)
                            tttATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTcccc                                                             <  1:6242455/93‑1 (MQ=255)
                            tttATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTcccc                                                             >  2:3873580/1‑93 (MQ=255)
                            tttATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTcccc                                                             >  2:3547041/1‑93 (MQ=255)
                              tataCAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCgg                                                           >  2:1253615/1‑93 (MQ=255)
                               ataCAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGc                                                          <  2:1331392/93‑1 (MQ=255)
                                    aaaaaaGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTg                                                     >  2:5732218/1‑93 (MQ=255)
                                          gACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTa                                               >  2:6215469/1‑93 (MQ=255)
                                          gACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTa                                               <  1:1693778/93‑1 (MQ=255)
                                            cAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATg                                             <  2:5063337/93‑1 (MQ=255)
                                            cAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATg                                             >  2:1123693/1‑93 (MQ=255)
                                             aGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATgg                                            >  2:4919066/1‑93 (MQ=255)
                                             aGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATgg                                            <  1:4656474/93‑1 (MQ=255)
                                              ggAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTTGCGTTATGGt                                           >  2:4736028/1‑93 (MQ=255)
                                              ggAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGt                                           >  2:4094114/1‑93 (MQ=255)
                                               gAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTc                                          >  1:2703261/1‑93 (MQ=255)
                                                aaCGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCa                                         <  1:399475/93‑1 (MQ=255)
                                                aaCGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCa                                         >  2:4499602/1‑93 (MQ=255)
                                                aaCGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCa                                         <  1:4955865/93‑1 (MQ=255)
                                                 aCGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAg                                        >  1:4859310/1‑93 (MQ=255)
                                                  cGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGa                                       <  2:3403006/93‑1 (MQ=255)
                                                   gTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCATTTCCCCGGCAGCTGGCGTTATGGTCAGAt                                      >  1:3078062/1‑93 (MQ=255)
                                                    tATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATg                                     >  1:1940577/1‑93 (MQ=255)
                                                     aTTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATgg                                    >  1:617595/1‑93 (MQ=255)
                                                      tttACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGt                                   <  2:1810167/93‑1 (MQ=255)
                                                       ttACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATTGTCAGATGGtt                                  >  1:2340641/1‑93 (MQ=255)
                                                         aCTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGtttt                                >  2:2603487/1‑93 (MQ=255)
                                                         aCTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGtttt                                <  2:5503193/93‑1 (MQ=255)
                                                           tGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTg                              >  2:445/1‑93 (MQ=255)
                                                           tGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTg                              <  2:894794/93‑1 (MQ=255)
                                                           tGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTg                              >  2:2012537/1‑93 (MQ=255)
                                                             ggTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGca                            <  1:4300393/93‑1 (MQ=255)
                                                             ggTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGca                            >  1:6369143/1‑93 (MQ=255)
                                                              gTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaa                           <  2:2820579/93‑1 (MQ=255)
                                                               ttAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaac                          >  1:2876193/1‑93 (MQ=255)
                                                                tAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaaca                         <  2:2380261/93‑1 (MQ=255)
                                                                 aaaTATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaacaa                        <  1:958931/93‑1 (MQ=255)
                                                                 aaaTATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaacaa                        <  1:4491523/93‑1 (MQ=255)
                                                                 aaaTATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaacaa                        <  1:4722028/93‑1 (MQ=255)
                                                                 aaaTATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGcaacaa                        >  1:5880708/1‑93 (MQ=255)
                                                                   atatAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAt                      >  1:6091423/1‑93 (MQ=255)
                                                                   atatAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAt                      >  2:264639/1‑93 (MQ=255)
                                                                   atatAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAt                      >  1:1424192/1‑93 (MQ=255)
                                                                    tataATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAtc                     >  1:3946316/1‑93 (MQ=255)
                                                                    tataATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAtc                     <  1:4239580/93‑1 (MQ=255)
                                                                     ataATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAtct                    <  2:3028125/93‑1 (MQ=255)
                                                                      taATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAtctc                   <  2:5946551/93‑1 (MQ=255)
                                                                      taATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAtctc                   >  2:6399963/1‑93 (MQ=255)
                                                                         tcatcCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTcaca                >  1:818419/1‑93 (MQ=255)
                                                                         tcatcCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTcaca                >  1:5825480/1‑93 (MQ=255)
                                                                          catcCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACaa               <  1:2706063/93‑1 (MQ=255)
                                                                           atcCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAAt              <  2:3708037/93‑1 (MQ=255)
                                                                             ccTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATaa            >  1:1091782/1‑93 (MQ=255)
                                                                             ccTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATaa            <  2:4261790/93‑1 (MQ=255)
                                                                              cTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATaaa           <  2:6192888/93‑1 (MQ=255)
                                                                                gCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATaaaaa         >  1:1312059/1‑93 (MQ=255)
                                                                                gCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATaaaaa         >  2:3253312/1‑93 (MQ=255)
                                                                                 cTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAg        >  2:4619899/1‑93 (MQ=255)
                                                                                  ttttCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGt       <  2:487190/93‑1 (MQ=255)
                                                                                  ttttCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGt       >  1:3666649/1‑93 (MQ=255)
                                                                                  ttttCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGt       >  1:1514648/1‑93 (MQ=255)
                                                                                  ttttCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGt       >  2:3766781/1‑93 (MQ=255)
                                                                                    ttCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGttt     <  1:5667841/93‑1 (MQ=255)
                                                                                      catcgCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCa   >  2:1560501/1‑93 (MQ=255)
                                                                                       atcgCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCaa  <  2:224022/93‑1 (MQ=255)
                                                                                       atcgCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCaa  >  2:2763755/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCACAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAA  >  NC_000913/4266789‑4266968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCACAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAACATA  >  NC_000913/4266786‑4266972
                                                                                             |                                                                                             
AATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCG                                                                                               <  SRR4302537.4983063/94‑1 (MQ=60)
  TGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCA                                                                                             >  SRR4302537.4957633/1‑94 (MQ=60)
  TGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCA                                                                                             >  SRR4302537.5554891/1‑94 (MQ=60)
   GTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAA                                                                                            <  SRR4302537.3159352/94‑1 (MQ=60)
    TATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAA                                                                                           >  SRR4302537.3331412/1‑94 (MQ=60)
    TATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAA                                                                                           >  SRR4302537.6267543/1‑94 (MQ=60)
    TATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAA                                                                                           <  SRR4302537.5387648/94‑1 (MQ=60)
     TTCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAA                                                                                          <  SRR4302537.3122491/94‑1 (MQ=60)
     ATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAA                                                                                          >  SRR4302537.1721100/1‑94 (MQ=60)
       CCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAAC                                                                                        >  SRR4302537.2320469/1‑94 (MQ=60)
        CTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACC                                                                                       >  SRR4302537.3076036/1‑94 (MQ=60)
        CTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACC                                                                                       >  SRR4302537.3443916/1‑94 (MQ=60)
        CTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACC                                                                                       <  SRR4302537.2402027/94‑1 (MQ=60)
         TTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCG                                                                                      <  SRR4302537.5678196/94‑1 (MQ=60)
           ACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCA                                                                                    >  SRR4302537.2556949/1‑94 (MQ=60)
             ATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGA                                                                                  >  SRR4302537.3922413/1‑94 (MQ=60)
             ATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGA                                                                                  >  SRR4302537.3105896/1‑94 (MQ=60)
              TCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGAT                                                                                 <  SRR4302537.5829286/94‑1 (MQ=60)
               CGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATA                                                                                >  SRR4302537.835323/1‑94 (MQ=60)
                 AGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGTGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAT                                                                              <  SRR4302537.5147052/94‑1 (MQ=60)
                 AGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAT                                                                              <  SRR4302537.467605/94‑1 (MQ=60)
                 AGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAT                                                                              >  SRR4302537.2032434/1‑94 (MQ=60)
                 AGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAAT                                                                              <  SRR4302537.6489283/94‑1 (MQ=60)
                  GTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATC                                                                             >  SRR4302537.4919185/1‑94 (MQ=60)
                   TAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCC                                                                            >  SRR4302537.3268209/1‑94 (MQ=60)
                   TAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCC                                                                            >  SRR4302537.5477284/1‑94 (MQ=60)
                   TAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCC                                                                            <  SRR4302537.3660680/94‑1 (MQ=60)
                   TAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCC                                                                            >  SRR4302537.3983269/1‑94 (MQ=60)
                    AATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCT                                                                           <  SRR4302537.4403512/94‑1 (MQ=60)
                     ATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTT                                                                          >  SRR4302537.881076/1‑94 (MQ=60)
                       AAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCC                                                                        <  SRR4302537.6130076/94‑1 (MQ=60)
                       AAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCC                                                                        >  SRR4302537.822879/1‑94 (MQ=60)
                         ACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTT                                                                      >  SRR4302537.3454789/1‑94 (MQ=60)
                         ACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTT                                                                      <  SRR4302537.4282417/94‑1 (MQ=60)
                         ACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTT                                                                      >  SRR4302537.2417903/1‑94 (MQ=60)
                            TTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCC                                                                   >  SRR4302537.392385/1‑94 (MQ=60)
                            TTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCC                                                                   <  SRR4302537.1523032/94‑1 (MQ=60)
                            TTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCC                                                                   >  SRR4302537.2288954/1‑94 (MQ=60)
                            TTTGTTATACGAAAAAACACAGAAACGTATTTACTGGTTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCC                                                                   <  SRR4302537.3915038/94‑1 (MQ=60)
                              TTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCC                                                                 >  SRR4302537.5100317/1‑94 (MQ=60)
                              TTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCC                                                                 >  SRR4302537.589957/1‑94 (MQ=60)
                               TTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCG                                                                <  SRR4302537.6285361/94‑1 (MQ=60)
                               TTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCG                                                                <  SRR4302537.5404254/94‑1 (MQ=60)
                                      AAAAAAAGACAGGAATGTATTTACTGGGTTAAATATAATCATCCTGCTTTCCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTG                                                         >  SRR4302537.3318622/1‑94 (MQ=60)
                                      AAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTG                                                         >  SRR4302537.343609/1‑94 (MQ=60)
                                       AAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGG                                                        >  SRR4302537.3489839/1‑94 (MQ=60)
                                        AAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGC                                                       >  SRR4302537.638159/1‑94 (MQ=60)
                                         AAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCG                                                      <  SRR4302537.4896916/94‑1 (MQ=60)
                                          AAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGT                                                     <  SRR4302537.4555253/94‑1 (MQ=60)
                                           AAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTT                                                    >  SRR4302537.951707/1‑94 (MQ=60)
                                           AAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTT                                                    <  SRR4302537.6016230/94‑1 (MQ=60)
                                             GACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTAT                                                  <  SRR4302537.1705632/94‑1 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               <  SRR4302537.4688665/94‑1 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               >  SRR4302537.6136888/1‑94 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               >  SRR4302537.2170190/1‑94 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               >  SRR4302537.1338682/1‑94 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               <  SRR4302537.2659499/94‑1 (MQ=60)
                                                AGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGT                                               >  SRR4302537.1618144/1‑94 (MQ=60)
                                                 GGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTC                                              >  SRR4302537.2722137/1‑94 (MQ=60)
                                                   AACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAG                                            <  SRR4302537.4990035/94‑1 (MQ=60)
                                                   AACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAG                                            >  SRR4302537.3695268/1‑94 (MQ=60)
                                                   AACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAG                                            <  SRR4302537.402245/94‑1 (MQ=60)
                                                   AACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAG                                            >  SRR4302537.4892835/1‑94 (MQ=60)
                                                     CGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGAT                                          >  SRR4302537.578452/1‑94 (MQ=60)
                                                     CGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGAT                                          <  SRR4302537.6366666/94‑1 (MQ=60)
                                                     CGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCATTTCCCCGGCAGCTGGCGTTATGGTCAGAT                                          >  SRR4302537.3099503/1‑94 (MQ=60)
                                                      GTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATG                                         >  SRR4302537.1954071/1‑94 (MQ=60)
                                                       TATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGG                                        >  SRR4302537.621798/1‑94 (MQ=60)
                                                        ATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGT                                       >  SRR4302537.1284524/1‑94 (MQ=60)
                                                         TTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATTGTCAGATGGTT                                      >  SRR4302537.2357137/1‑94 (MQ=60)
                                                         TTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTT                                      >  SRR4302537.2778698/1‑94 (MQ=60)
                                                         TTTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTT                                      >  SRR4302537.2467507/1‑94 (MQ=60)
                                                          TTACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTT                                     <  SRR4302537.5754276/94‑1 (MQ=60)
                                                            ACTGTGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTT                                   <  SRR4302537.4817933/94‑1 (MQ=60)
                                                            ACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTT                                   <  SRR4302537.2634255/94‑1 (MQ=60)
                                                            ACTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTT                                   <  SRR4302537.3973778/94‑1 (MQ=60)
                                                             CTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTG                                  <  SRR4302537.6425267/94‑1 (MQ=60)
                                                             CTGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTG                                  >  SRR4302537.2731289/1‑94 (MQ=60)
                                                              TGGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGC                                 <  SRR4302537.4131791/94‑1 (MQ=60)
                                                               GGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCA                                >  SRR4302537.175568/1‑94 (MQ=60)
                                                               GGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCA                                >  SRR4302537.6412584/1‑94 (MQ=60)
                                                               GGGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCA                                >  SRR4302537.1561191/1‑94 (MQ=60)
                                                                GGTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAA                               <  SRR4302537.4330280/94‑1 (MQ=60)
                                                                 GTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAAC                              >  SRR4302537.2896376/1‑94 (MQ=60)
                                                                 GTTAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTCCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAAC                              <  SRR4302537.3402672/94‑1 (MQ=60)
                                                                   TAAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAA                            >  SRR4302537.5921057/1‑94 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           <  SRR4302537.4754670/94‑1 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           <  SRR4302537.965545/94‑1 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           >  SRR4302537.472453/1‑94 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           >  SRR4302537.5916332/1‑94 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           <  SRR4302537.4522595/94‑1 (MQ=60)
                                                                    AAATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAA                           <  SRR4302537.5553474/94‑1 (MQ=60)
                                                                     AATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAT                          >  SRR4302537.1434109/1‑94 (MQ=60)
                                                                     AATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAAT                          >  SRR4302537.6133276/1‑94 (MQ=60)
                                                                      ATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATC                         >  SRR4302537.3973919/1‑94 (MQ=60)
                                                                      ATATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATC                         <  SRR4302537.5610020/94‑1 (MQ=60)
                                                                       TATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCT                        <  SRR4302537.4269059/94‑1 (MQ=60)
                                                                       TATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTGATGGTCAGATGGTTTTTGCAACAAATCT                        >  SRR4302537.6259275/1‑94 (MQ=60)
                                                                        ATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTC                       >  SRR4302537.995174/1‑94 (MQ=60)
                                                                        ATAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTC                       >  SRR4302537.3180136/1‑94 (MQ=60)
                                                                         TAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCA                      <  SRR4302537.5557758/94‑1 (MQ=60)
                                                                         TAATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCA                      <  SRR4302537.4107772/94‑1 (MQ=60)
                                                                          AATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCAC                     <  SRR4302537.5847609/94‑1 (MQ=60)
                                                                           ATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACA                    >  SRR4302537.824041/1‑94 (MQ=60)
                                                                           ATCATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACA                    >  SRR4302537.5865404/1‑94 (MQ=60)
                                                                             CATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAAT                  <  SRR4302537.2724952/94‑1 (MQ=60)
                                                                             CATCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAAT                  >  SRR4302537.4837131/1‑94 (MQ=60)
                                                                             CATCCTGCTTTTCATCGCAAAAACCGAAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAAT                  >  SRR4302537.2312810/1‑94 (MQ=60)
                                                                             CATCCTGCTTGTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAAT                  <  SRR4302537.505320/94‑1 (MQ=60)
                                                                              CTCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATA                 <  SRR4302537.4317309/94‑1 (MQ=60)
                                                                               TCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAA                >  SRR4302537.5352767/1‑94 (MQ=60)
                                                                               TCCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAA                >  SRR4302537.1099322/1‑94 (MQ=60)
                                                                                CCTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAA               >  SRR4302537.4975770/1‑94 (MQ=60)
                                                                                 CTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAA              >  SRR4302537.68741/1‑94 (MQ=60)
                                                                                 CTGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAA              <  SRR4302537.5502668/94‑1 (MQ=60)
                                                                                  TGCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAA             >  SRR4302537.1321188/1‑94 (MQ=60)
                                                                                   GCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAG            <  SRR4302537.2724694/94‑1 (MQ=60)
                                                                                   GCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAG            <  SRR4302537.1400658/94‑1 (MQ=60)
                                                                                   GCTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAG            <  SRR4302537.568559/94‑1 (MQ=60)
                                                                                    CTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGT           >  SRR4302537.1525232/1‑94 (MQ=60)
                                                                                    CTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGT           >  SRR4302537.836573/1‑94 (MQ=60)
                                                                                    CTTTTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGT           >  SRR4302537.3692453/1‑94 (MQ=60)
                                                                                       TTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTC        >  SRR4302537.3678242/1‑94 (MQ=60)
                                                                                       TTCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTC        <  SRR4302537.5706622/94‑1 (MQ=60)
                                                                                        TCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCA       <  SRR4302537.2015845/94‑1 (MQ=60)
                                                                                        TCATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCA       >  SRR4302537.5153829/1‑94 (MQ=60)
                                                                                         CATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAA      >  SRR4302537.2246104/1‑94 (MQ=60)
                                                                                          ATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAAC     <  SRR4302537.3106165/94‑1 (MQ=60)
                                                                                          ATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAAC     <  SRR4302537.2386024/94‑1 (MQ=60)
                                                                                          ATCGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAAC     >  SRR4302537.5631318/1‑94 (MQ=60)
                                                                                          ATCGCAAAAACCGCAGATAATCCTTCCTTACCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAAC     >  SRR4302537.3717321/1‑94 (MQ=60)
                                                                                            CGCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAACAT   <  SRR4302537.5998541/94‑1 (MQ=60)
                                                                                             GCAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAGCATA  <  SRR4302537.4605038/94‑1 (MQ=60)
                                                                                             GCAAAAACCGCAGATAATCCTTCCTTCCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAACATA  <  SRR4302537.436555/94‑1 (MQ=60)
                                                                                             |                                                                                             
AATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCATCCTGCTTTTCATCACAAAAACCGCAGATAATCCTTCCTTTCCCCGGCAGCTGGCGTTATGGTCAGATGGTTTTTGCAACAAATCTCACAATAAAAAGTTTCAACATA  >  NC_000913/4266786‑4266972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑