Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,326,590	A→G	G626G (GGA→GGG)	yjdA →	putative vimentin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,326,590	0	A	G	100.0%	847.3 / NA	243	G626G (GGA→GGG)	yjdA	putative vimentin
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (108/135); total (108/135)

Only 100 of 253 total aligned reads displayed.

TTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACA  >  NC_000913/4326500‑4326679

 tCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCgg                                                                                        <  1:72665/93‑1 (MQ=255)

 tCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCgg                                                                                        <  2:5608607/93‑1 (MQ=255)

  cgcgCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCggg                                                                                       <  2:4379902/93‑1 (MQ=255)

   gcgcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCgggg                                                                                      >  2:3506607/1‑93 (MQ=255)

     gcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCggggga                                                                                    >  2:1164315/1‑91 (MQ=255)

     gcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGaa                                                                                    >  2:2176719/1‑93 (MQ=255)

      ccAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGaaa                                                                                   <  1:1422200/93‑1 (MQ=255)

         ggAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATga                                                                                >  1:299609/1‑93 (MQ=255)

          gAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATgag                                                                               >  2:5895452/1‑93 (MQ=255)

           aaGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATgaga                                                                              >  2:2662719/1‑93 (MQ=255)

           aaGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATgaga                                                                              <  2:2483822/93‑1 (MQ=255)

             gCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGaaa                                                                            >  1:4080541/1‑93 (MQ=255)

             gCAACGGACAAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGaaa                                                                            <  2:3610432/93‑1 (MQ=255)

               aaCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATc                                                                          <  1:2872686/93‑1 (MQ=255)

               aaCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATc                                                                          <  2:4505807/93‑1 (MQ=255)

                aCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCa                                                                         >  1:587834/1‑93 (MQ=255)

                  ggACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCAcc                                                                       <  2:5378474/93‑1 (MQ=255)

                  ggACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCAcc                                                                       <  2:149566/93‑1 (MQ=255)

                     cGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGAc                                                                    <  2:3794521/93‑1 (MQ=255)

                      gagcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACa                                                                   >  1:2354690/1‑93 (MQ=255)

                       agcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAg                                                                  <  1:1995288/93‑1 (MQ=255)

                       agcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAg                                                                  <  1:5931886/93‑1 (MQ=255)

                        gcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGa                                                                 >  2:650617/1‑93 (MQ=255)

                        gcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGa                                                                 >  2:3140834/1‑93 (MQ=255)

                          agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGaaa                                                               >  2:712624/1‑93 (MQ=255)

                          agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGaaa                                                               <  2:1888534/93‑1 (MQ=255)

                          agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGaaa                                                               >  1:4158898/1‑93 (MQ=255)

                          agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGaaa                                                               <  1:6477646/93‑1 (MQ=255)

                          agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGaaa                                                               >  2:414554/1‑93 (MQ=255)

                           gagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAAc                                                              <  2:5577753/93‑1 (MQ=255)

                           gagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAAc                                                              <  2:2314129/93‑1 (MQ=255)

                             gcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACgg                                                            >  1:2240054/1‑93 (MQ=255)

                             gcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACgg                                                            <  2:2920247/93‑1 (MQ=255)

                             gcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACgg                                                            >  1:2586122/1‑93 (MQ=255)

                              caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGt                                                           <  1:5399967/93‑1 (MQ=255)

                               aCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAATGGtt                                                          <  1:813368/93‑1 (MQ=255)

                               aCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGtt                                                          >  2:1361155/1‑93 (MQ=255)

                               aCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGtt                                                          <  1:6320430/93‑1 (MQ=255)

                                cgcgTTTAGGCGTTGTGCGTGAGCCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTg                                                         <  1:3499484/93‑1 (MQ=255)

                                cgcgTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAGTCACCGACAGAAACGGTTg                                                         <  2:6311510/93‑1 (MQ=255)

                                 gcgTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGTGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGa                                                        <  1:2969057/93‑1 (MQ=255)

                                  cgTTTAGGCGTTGTGCGTGAGACTTTTGCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGAt                                                       <  1:1787402/93‑1 (MQ=255)

                                   gTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGAtt                                                      >  1:5460597/1‑93 (MQ=255)

                                    tttAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTa                                                     <  2:1761784/93‑1 (MQ=255)

                                    tttAGGCGTTGTGCGTGAGACTTTGTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTa                                                     <  2:5351672/93‑1 (MQ=255)

                                     ttAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTAc                                                    <  1:1341926/93‑1 (MQ=255)

                                          cGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgt                                               <  2:2438899/93‑1 (MQ=255)

                                          cGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgt                                               >  2:1283183/1‑93 (MQ=255)

                                            ttGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgtgt                                             <  2:3401223/93‑1 (MQ=255)

                                            ttGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgtgt                                             <  1:4419788/93‑1 (MQ=255)

                                            ttGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgtgt                                             >  2:2742265/1‑93 (MQ=255)

                                              gtgCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTg                                           <  1:1027441/93‑1 (MQ=255)

                                              gtgCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTg                                           <  1:4483662/93‑1 (MQ=255)

                                               tgCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGc                                          <  1:5353879/93‑1 (MQ=255)

                                                 cGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCaa                                        <  2:2613632/93‑1 (MQ=255)

                                                  gTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGCAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAAc                                       >  1:4968885/1‑93 (MQ=255)

                                                   tGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACg                                      <  1:493212/93‑1 (MQ=255)

                                                   tGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACg                                      >  2:6173700/1‑93 (MQ=255)

                                                    tagaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGa                                     <  2:4264273/92‑1 (MQ=255)

                                                    gagaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGa                                     <  1:344527/93‑1 (MQ=255)

                                                      gaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGc                                   >  2:4105958/1‑93 (MQ=255)

                                                      gaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGc                                   <  2:1415823/93‑1 (MQ=255)

                                                      gaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGc                                   >  2:4853456/1‑93 (MQ=255)

                                                      gaCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGc                                   <  2:5996141/93‑1 (MQ=255)

                                                       aCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCa                                  >  2:6160655/1‑93 (MQ=255)

                                                        cTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGCCAGAAACGGTTGATTACAGTGTGTTGCAACGAGCAt                                 >  1:4555406/1‑93 (MQ=255)

                                                        cTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGAGCGGCGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCAt                                 <  2:3482326/93‑1 (MQ=255)

                                                          ttttCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTa                               >  1:1756835/1‑93 (MQ=255)

                                                            ttCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAg                             <  1:4183091/93‑1 (MQ=255)

                                                             tCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAgc                            >  1:3328443/1‑93 (MQ=255)

                                                                cgcTGGTTGAATCAGCCCGACTGGGGGCGGGGGAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                         >  2:3199037/1‑93 (MQ=255)

                                                                cgcTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                         >  2:2085739/1‑93 (MQ=255)

                                                                cgcTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                         <  2:4592169/93‑1 (MQ=255)

                                                                cgcTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                         <  1:2677189/93‑1 (MQ=255)

                                                                 gcTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAg                        >  1:3963489/1‑93 (MQ=255)

                                                                  cTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGa                       >  1:3596138/1‑93 (MQ=255)

                                                                   tGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGaa                      <  1:1177690/93‑1 (MQ=255)

                                                                     gTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGt                    <  1:1906389/93‑1 (MQ=255)

                                                                     gTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGt                    <  1:2436373/93‑1 (MQ=255)

                                                                     gTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGt                    <  1:6301261/93‑1 (MQ=255)

                                                                      ttGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTc                   >  1:5625127/1‑93 (MQ=255)

                                                                      ttGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTc                   >  1:5147140/1‑93 (MQ=255)

                                                                       tGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCg                  >  2:1671565/1‑93 (MQ=255)

                                                                         aaTCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGTATTAAGCGCAGAAGTCGAt                <  2:6280757/93‑1 (MQ=255)

                                                                         aaTCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                <  2:385110/93‑1 (MQ=255)

                                                                         aaTCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                >  2:5022015/1‑93 (MQ=255)

                                                                          aTCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtc               <  2:88849/93‑1 (MQ=255)

                                                                          aTCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtc               >  2:5175146/1‑93 (MQ=255)

                                                                            cAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtctc             <  2:3333987/93‑1 (MQ=255)

                                                                            cAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtctc             <  1:2825597/93‑1 (MQ=255)

                                                                             aGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATctct            <  1:4587200/93‑1 (MQ=255)

                                                                               cccGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAt          >  2:3671031/1‑93 (MQ=255)

                                                                                ccGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAtt         >  1:6139274/1‑93 (MQ=255)

                                                                                 cGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTg        <  1:3795221/93‑1 (MQ=255)

                                                                                 cGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTg        <  1:91794/93‑1 (MQ=255)

                                                                                  gACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGc       >  2:2577914/1‑93 (MQ=255)

                                                                                     tGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCcaa    >  1:3922248/1‑93 (MQ=255)

                                                                                     tGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGAATACAGTGTGTTGCAACGAGCATTAAGCTCAGAAGTCGATCTCTATTGGcaa    >  2:2255631/1‑93 (MQ=255)

                                                                                      ggggGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCcaac   <  2:1660566/93‑1 (MQ=255)

                                                                                       ggggCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCcaaca  <  1:6257293/93‑1 (MQ=255)

TTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACA  >  NC_000913/4326500‑4326679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATG  >  NC_000913/4326497‑4326683

CATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGG                                                                                               >  SRR4302537.100647/1‑94 (MQ=60)

 ATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGC                                                                                              >  SRR4302537.3000716/1‑94 (MQ=60)

 ATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGC                                                                                              <  SRR4302537.5955124/94‑1 (MQ=60)

   TTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGG                                                                                            <  SRR4302537.3788778/94‑1 (MQ=60)

    TCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGG                                                                                           <  SRR4302537.5712210/94‑1 (MQ=60)

    TCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGG                                                                                           <  SRR4302537.73199/94‑1 (MQ=60)

     CGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGG                                                                                          >  SRR4302537.1922398/1‑94 (MQ=60)

      GCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGA                                                                                         >  SRR4302537.1357611/1‑94 (MQ=60)

      GCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGA                                                                                         <  SRR4302537.296344/94‑1 (MQ=60)

        GCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAA                                                                                       >  SRR4302537.5385391/1‑94 (MQ=60)

        GCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGCGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAA                                                                                       >  SRR4302537.1523251/1‑94 (MQ=60)

         CCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAAT                                                                                      <  SRR4302537.1432104/94‑1 (MQ=60)

          CAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATG                                                                                     >  SRR4302537.2445519/1‑94 (MQ=60)

           AGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGA                                                                                    <  SRR4302537.3965896/94‑1 (MQ=60)

           AGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGA                                                                                    >  SRR4302537.3709897/1‑94 (MQ=60)

           AGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGA                                                                                    >  SRR4302537.301698/1‑94 (MQ=60)

            GGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAG                                                                                   >  SRR4302537.413267/1‑94 (MQ=60)

            GGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAG                                                                                   <  SRR4302537.2847986/94‑1 (MQ=60)

             GAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGA                                                                                  <  SRR4302537.5438371/94‑1 (MQ=60)

              AAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAA                                                                                 >  SRR4302537.1234894/1‑94 (MQ=60)

               AGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAA                                                                                >  SRR4302537.4109025/1‑94 (MQ=60)

                 CAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATC                                                                              <  SRR4302537.4256841/94‑1 (MQ=60)

                 CAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACNNGGGGCGGGGAAATNNGNANTC                                                                              >  SRR4302537.5459580/1‑94 (MQ=60)

                  AACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCA                                                                             <  SRR4302537.2892844/94‑1 (MQ=60)

                  AACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCA                                                                             <  SRR4302537.5663318/94‑1 (MQ=60)

                  AACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCA                                                                             >  SRR4302537.591847/1‑94 (MQ=60)

                     GGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCG                                                                          >  SRR4302537.3011066/1‑94 (MQ=60)

                      GACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGA                                                                         >  SRR4302537.738970/1‑94 (MQ=60)

                        CGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACA                                                                       >  SRR4302537.2371292/1‑94 (MQ=60)

                          AGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGA                                                                     <  SRR4302537.5972588/94‑1 (MQ=60)

                          AGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGA                                                                     <  SRR4302537.2009160/94‑1 (MQ=60)

                          AGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGA                                                                     <  SRR4302537.2482643/94‑1 (MQ=60)

                            CAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGGAATCACCGACAGAAA                                                                   >  SRR4302537.739254/1‑94 (MQ=60)

                            CAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAA                                                                   >  SRR4302537.4187940/1‑94 (MQ=60)

                             AGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAAC                                                                  <  SRR4302537.6521648/94‑1 (MQ=60)

                             AGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAAC                                                                  >  SRR4302537.2428535/1‑94 (MQ=60)

                              GAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACG                                                                 >  SRR4302537.5461394/1‑94 (MQ=60)

                               AGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGG                                                                >  SRR4302537.2604215/1‑94 (MQ=60)

                               AGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGG                                                                >  SRR4302537.2255847/1‑94 (MQ=60)

                               AGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGG                                                                >  SRR4302537.1571150/1‑94 (MQ=60)

                                 CACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTT                                                              <  SRR4302537.868280/94‑1 (MQ=60)

                                 CACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTT                                                              <  SRR4302537.4204831/94‑1 (MQ=60)

                                 CACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTT                                                              <  SRR4302537.4493356/94‑1 (MQ=60)

                                 CACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTT                                                              <  SRR4302537.5436826/94‑1 (MQ=60)

                                  ACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGACACGGTTG                                                             >  SRR4302537.2641085/1‑94 (MQ=60)

                                  ACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAATGGTTG                                                             <  SRR4302537.818940/94‑1 (MQ=60)

                                  ACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTG                                                             <  SRR4302537.722916/94‑1 (MQ=60)

                                  ACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTG                                                             <  SRR4302537.6363675/94‑1 (MQ=60)

                                   CGCGTTTAGGCGTTGTGCGTGAGCCTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGA                                                            <  SRR4302537.3524245/94‑1 (MQ=60)

                                    GCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGTGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGAT                                                           <  SRR4302537.2989873/94‑1 (MQ=60)

                                     CGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATT                                                          >  SRR4302537.5497845/1‑94 (MQ=60)

                                     CGTTTAGGCGTTGTGCGTGAGACTTTTGCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATT                                                          <  SRR4302537.1799894/94‑1 (MQ=60)

                                       TTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACAGTTGATTAC                                                        >  SRR4302537.4609771/1‑94 (MQ=60)

                                        TTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACA                                                       <  SRR4302537.1351272/94‑1 (MQ=60)

                                         TAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAG                                                      <  SRR4302537.3619451/94‑1 (MQ=60)

                                         TAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAG                                                      >  SRR4302537.2275383/1‑94 (MQ=60)

                                         TAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAAGCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAG                                                      <  SRR4302537.431522/94‑1 (MQ=60)

                                           GGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTG                                                    >  SRR4302537.5412512/1‑94 (MQ=60)

                                           GGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTG                                                    >  SRR4302537.3095803/1‑94 (MQ=60)

                                             CGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTG                                                  >  SRR4302537.6130014/1‑94 (MQ=60)

                                               TTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTT                                                <  SRR4302537.4450302/94‑1 (MQ=60)

                                               TTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTT                                                <  SRR4302537.1825272/94‑1 (MQ=60)

                                               TTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTT                                                <  SRR4302537.5696181/94‑1 (MQ=60)

                                                 GTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGC                                              <  SRR4302537.4514679/94‑1 (MQ=60)

                                                 GTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGC                                              <  SRR4302537.987935/94‑1 (MQ=60)

                                                 GTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGC                                              <  SRR4302537.1034514/94‑1 (MQ=60)

                                                 GTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGC                                              >  SRR4302537.35163/1‑94 (MQ=60)

                                                  TGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCA                                             <  SRR4302537.5390543/94‑1 (MQ=60)

                                                   GCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAA                                            >  SRR4302537.1337732/1‑94 (MQ=60)

                                                    CGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGCAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAAC                                           >  SRR4302537.5003128/1‑94 (MQ=60)

                                                    CGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAAC                                           >  SRR4302537.5129387/1‑94 (MQ=60)

                                                    CGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAAC                                           >  SRR4302537.3012347/1‑94 (MQ=60)

                                                     GTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACG                                          <  SRR4302537.110312/94‑1 (MQ=60)

                                                      TGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGA                                         <  SRR4302537.496612/94‑1 (MQ=60)

                                                       GAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAG                                        >  SRR4302537.3426197/1‑94 (MQ=60)

                                                       GAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAG                                        <  SRR4302537.346922/94‑1 (MQ=60)

                                                        AGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGC                                       >  SRR4302537.3989916/1‑94 (MQ=60)

                                                        AGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGC                                       <  SRR4302537.6483162/94‑1 (MQ=60)

                                                          ACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGCCAGAAACGGTTGATTACAGTGTGTTGCAACGAGCAT                                     >  SRR4302537.4586946/1‑94 (MQ=60)

                                                            TTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTA                                   >  SRR4302537.1769080/1‑94 (MQ=60)

                                                               TTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGC                                >  SRR4302537.3351996/1‑94 (MQ=60)

                                                               TTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGC                                <  SRR4302537.1781668/94‑1 (MQ=60)

                                                               TTCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGC                                <  SRR4302537.4212295/94‑1 (MQ=60)

                                                                TCGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCG                               <  SRR4302537.6358672/94‑1 (MQ=60)

                                                                TCGCGCTGGTTGAATCAGCCAGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCG                               <  SRR4302537.1821261/94‑1 (MQ=60)

                                                                 CGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGC                              >  SRR4302537.4914158/1‑94 (MQ=60)

                                                                 CGCGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGC                              >  SRR4302537.3931204/1‑94 (MQ=60)

                                                                   CGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAG                            >  SRR4302537.5961893/1‑94 (MQ=60)

                                                                   CGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAG                            <  SRR4302537.217374/94‑1 (MQ=60)

                                                                   CGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAG                            <  SRR4302537.2695886/94‑1 (MQ=60)

                                                                   CGCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAG                            >  SRR4302537.3991211/1‑94 (MQ=60)

                                                                    GCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGA                           >  SRR4302537.3621489/1‑94 (MQ=60)

                                                                    GCTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGA                           >  SRR4302537.2720241/1‑94 (MQ=60)

                                                                     CTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAA                          >  SRR4302537.4548268/1‑94 (MQ=60)

                                                                     CTGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAA                          <  SRR4302537.6374161/94‑1 (MQ=60)

                                                                      TGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAG                         <  SRR4302537.4790416/94‑1 (MQ=60)

                                                                      TGGTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAG                         <  SRR4302537.1185879/94‑1 (MQ=60)

                                                                       GGTTGAATCAGCCCGACTGGGGGCGGAGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGT                        <  SRR4302537.2042990/94‑1 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.2453535/94‑1 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.6332921/94‑1 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.6344413/94‑1 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       >  SRR4302537.5663593/1‑94 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.4125644/94‑1 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       >  SRR4302537.5182608/1‑94 (MQ=60)

                                                                        GTTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.1919631/94‑1 (MQ=60)

                                                                        GTTGAATAAGTGCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTC                       <  SRR4302537.5478134/94‑1 (MQ=60)

                                                                         TTGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCG                      <  SRR4302537.4580742/94‑1 (MQ=60)

                                                                          TGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGA                     >  SRR4302537.5364964/1‑94 (MQ=60)

                                                                          TGAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGA                     >  SRR4302537.5148870/1‑94 (MQ=60)

                                                                           GAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAT                    <  SRR4302537.6088042/94‑1 (MQ=60)

                                                                           GAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAT                    >  SRR4302537.4987475/1‑94 (MQ=60)

                                                                           GAATCAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAT                    <  SRR4302537.3477424/94‑1 (MQ=60)

                                                                            AATCAGCCCGACTGGGGGCGTGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATC                   <  SRR4302537.3101258/94‑1 (MQ=60)

                                                                               CAGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCT                <  SRR4302537.2845348/94‑1 (MQ=60)

                                                                                AGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTGGATCTCTA               >  SRR4302537.2879584/1‑94 (MQ=60)

                                                                                AGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTA               <  SRR4302537.261472/94‑1 (MQ=60)

                                                                                AGCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTA               <  SRR4302537.4618928/94‑1 (MQ=60)

                                                                                 GCCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAT              <  SRR4302537.6211394/94‑1 (MQ=60)

                                                                                  CCCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATT             >  SRR4302537.6181487/1‑94 (MQ=60)

                                                                                   CCGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTG            <  SRR4302537.3997908/94‑1 (MQ=60)

                                                                                    CGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGC           <  SRR4302537.3821853/94‑1 (MQ=60)

                                                                                    CGACTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGC           <  SRR4302537.92461/94‑1 (MQ=60)

                                                                                       CTGGGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAA        >  SRR4302537.3949657/1‑94 (MQ=60)

                                                                                          GGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAA     <  SRR4302537.6341657/94‑1 (MQ=60)

                                                                                          GGGGCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAA     <  SRR4302537.6300268/94‑1 (MQ=60)

                                                                                             GCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATG  >  SRR4302537.3016156/1‑94 (MQ=60)

                                                                                             GCGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATG  <  SRR4302537.2186349/94‑1 (MQ=60)

CATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATG  >  NC_000913/4326497‑4326683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`