Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,426,466 T→C intergenic (‑135/‑47) ytfB ← / → b4207 hypothetical protein/FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,426,4660TC100.0% 998.0 / NA 280intergenic (‑135/‑47)ytfB/b4207hypothetical protein/FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (168/112);  total (168/112)

Only 100 of 286 total aligned reads displayed.

CTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGTGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGC  >  NC_000913/4426376‑4426554
                                                                                          |                                                                                        
cTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCgg                                                                                        <  1:2815003/93‑1 (MQ=255)
 tttATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGc                                                                                       >  1:3938597/1‑93 (MQ=255)
 tttATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGc                                                                                       >  1:1393213/1‑93 (MQ=255)
 tttATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGc                                                                                       <  2:5773707/93‑1 (MQ=255)
 tttATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGc                                                                                       <  2:1464375/93‑1 (MQ=255)
 tttATTATATTCATACGGGATATTGCTATTGGTTCTTTTTCCCTGGGATTTGTCATGATTGCCGCGACAAAGTTTTACCCAAAGAAGTGCGGc                                                                                       >  1:2541757/1‑93 (MQ=255)
  ttattaTATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCt                                                                                      >  2:2579957/1‑93 (MQ=255)
  ttattaTATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCt                                                                                      >  1:1127695/1‑93 (MQ=255)
    attatATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGa                                                                                    >  2:3942252/1‑93 (MQ=255)
    attatATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGa                                                                                    <  1:2764421/93‑1 (MQ=255)
    attatATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGa                                                                                    <  1:322614/93‑1 (MQ=255)
      tataTTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGata                                                                                  <  2:4102293/93‑1 (MQ=255)
      tataTTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGata                                                                                  <  1:5823278/93‑1 (MQ=255)
      tataTTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGata                                                                                  <  1:2350267/93‑1 (MQ=255)
      tataTTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGata                                                                                  <  1:4438955/93‑1 (MQ=255)
       atatTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGatat                                                                                 <  2:4883043/93‑1 (MQ=255)
       atatTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGatat                                                                                 >  1:333688/1‑93 (MQ=255)
        tatTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAtg                                                                                >  2:2032037/1‑93 (MQ=255)
        tatTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAtg                                                                                >  2:444565/1‑93 (MQ=255)
        tatTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAtg                                                                                >  1:499997/1‑93 (MQ=255)
             aTACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGcc                                                                           >  2:2758421/1‑93 (MQ=255)
             aTACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGcc                                                                           >  1:4889705/1‑93 (MQ=255)
             aTACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGcc                                                                           <  1:3007758/93‑1 (MQ=255)
              tACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGccc                                                                          >  2:2510788/1‑93 (MQ=255)
              tACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGccc                                                                          <  1:592298/93‑1 (MQ=255)
              tACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGccc                                                                          >  2:5017941/1‑93 (MQ=255)
                cGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGc                                                                        <  2:437114/93‑1 (MQ=255)
                cGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGc                                                                        <  1:1952840/93‑1 (MQ=255)
                  ggATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTa                                                                      >  2:387042/1‑93 (MQ=255)
                    atatTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACt                                                                    <  1:2078855/93‑1 (MQ=255)
                    atatTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACt                                                                    >  2:41646/1‑93 (MQ=255)
                      atTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACttt                                                                  >  2:5374426/1‑93 (MQ=255)
                        tGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTtat                                                                >  1:4412217/1‑93 (MQ=255)
                         gCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTtata                                                               >  2:5688577/1‑93 (MQ=255)
                         gCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTtata                                                               >  2:4679538/1‑93 (MQ=255)
                         gCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTtata                                                               <  2:4004841/93‑1 (MQ=255)
                         gCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTtata                                                               <  1:887452/93‑1 (MQ=255)
                          cTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAc                                                              >  2:600382/1‑93 (MQ=255)
                          cTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAc                                                              <  2:6395231/93‑1 (MQ=255)
                          cTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAc                                                              >  2:2371453/1‑93 (MQ=255)
                          cTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAc                                                              <  1:6309153/93‑1 (MQ=255)
                           tATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAcc                                                             >  2:4749975/1‑93 (MQ=255)
                           tATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAcc                                                             >  1:5284876/1‑93 (MQ=255)
                           tATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAcc                                                             >  1:972764/1‑93 (MQ=255)
                               gTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTaa                                                         >  2:4389481/1‑93 (MQ=255)
                                tttCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAg                                                        >  2:3366111/1‑93 (MQ=255)
                                tttCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAg                                                        <  1:3477170/93‑1 (MQ=255)
                                 ttCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGa                                                       <  2:788052/93‑1 (MQ=255)
                                 ttCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGa                                                       >  1:3722148/1‑93 (MQ=255)
                                  tCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGaa                                                      <  1:408950/93‑1 (MQ=255)
                                    tttttCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAg                                                    >  2:4536009/1‑93 (MQ=255)
                                    tttttCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAg                                                    >  1:4268386/1‑93 (MQ=255)
                                     ttttCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAgg                                                   >  1:6211805/1‑93 (MQ=255)
                                     ttttCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAgg                                                   >  1:2446483/1‑93 (MQ=255)
                                      tttCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCATAAGAAAGGa                                                  >  2:5577115/1‑93 (MQ=255)
                                        tCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGaaa                                                >  2:3601635/1‑93 (MQ=255)
                                        tCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCAGCTACTTTATACCCTAAGAAAGGaaa                                                >  2:5218672/1‑93 (MQ=255)
                                          ccTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATa                                              <  2:2298312/93‑1 (MQ=255)
                                          ccTGGGATGTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATa                                              <  2:1268341/93‑1 (MQ=255)
                                           cTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATAc                                             >  1:5532825/1‑93 (MQ=255)
                                           cTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATAc                                             >  1:1258153/1‑93 (MQ=255)
                                            tGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACg                                            >  1:2284606/1‑93 (MQ=255)
                                            tGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACg                                            >  2:3104539/1‑93 (MQ=255)
                                              ggATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGAt                                          <  1:1042757/93‑1 (MQ=255)
                                              ggATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGAt                                          <  1:6096158/93‑1 (MQ=255)
                                               gATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATg                                         <  2:3276558/93‑1 (MQ=255)
                                               gATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATg                                         >  2:921658/1‑93 (MQ=255)
                                                aTTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGa                                        <  1:1028066/93‑1 (MQ=255)
                                                aTTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGa                                        <  2:4946232/93‑1 (MQ=255)
                                                  ttGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGacc                                      >  2:2194543/1‑93 (MQ=255)
                                                   tGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGacca                                     >  1:915267/1‑93 (MQ=255)
                                                    gTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACACTAAGAAAGGAAATACGATGagcac                                    >  2:5111989/1‑93 (MQ=255)
                                                         catTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCaa                               >  2:4660774/1‑93 (MQ=255)
                                                         catCCCCGCGTCAAAGTTTTACCCAATGCAGTGCGGCTGGTATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCaa                               >  2:1935038/1‑93 (MQ=255)
                                                          atTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAAc                              >  2:1180568/1‑93 (MQ=255)
                                                          atTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAAc                              >  2:5285890/1‑93 (MQ=255)
                                                             cccGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACttt                           >  1:6028474/1‑93 (MQ=255)
                                                             cccGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACttt                           >  1:4610035/1‑93 (MQ=255)
                                                             cccGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACttt                           >  2:1575844/1‑93 (MQ=255)
                                                              ccGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACtttt                          <  1:5357282/93‑1 (MQ=255)
                                                              ccGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACtttt                          >  1:4719705/1‑93 (MQ=255)
                                                                gcgACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGa                        >  1:3590531/1‑93 (MQ=255)
                                                                gcgACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGa                        >  2:6265420/1‑93 (MQ=255)
                                                                gcgACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGa                        >  2:2859406/1‑93 (MQ=255)
                                                                gcgACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGa                        >  1:4215173/1‑93 (MQ=255)
                                                                  gACAAAGTTTTATCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGaca                      >  1:5655984/1‑93 (MQ=255)
                                                                     aaaGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCa                   >  1:3167054/1‑93 (MQ=255)
                                                                       aGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATc                 >  2:2780228/1‑93 (MQ=255)
                                                                          tttACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGaa              <  2:1396518/93‑1 (MQ=255)
                                                                          tttACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGaa              <  2:1752850/93‑1 (MQ=255)
                                                                            tACCCAAAGAAGTGCGGCTGAAATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAgc            <  2:548785/93‑1 (MQ=255)
                                                                              cccAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAgcgc          <  1:569251/93‑1 (MQ=255)
                                                                                 aaaGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACGCCATCGAAGCgcaag       <  1:1709829/93‑1 (MQ=255)
                                                                                 aaaGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCgcaag       >  1:5577383/1‑93 (MQ=255)
                                                                                  aagaagTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCgcaagc      >  1:5130559/1‑93 (MQ=255)
                                                                                  aagaagTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCgcaagc      >  1:2141236/1‑93 (MQ=255)
                                                                                  aagaagTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCgcaagc      >  1:2070982/1‑93 (MQ=255)
                                                                                      agTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCaagcaagc  <  1:33157/93‑1 (MQ=255)
                                                                                      agTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCaagcaagc  <  2:6052066/93‑1 (MQ=255)
                                                                                      agTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCaagcaagc  <  1:841130/93‑1 (MQ=255)
                                                                                          |                                                                                        
CTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGTGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGC  >  NC_000913/4426376‑4426554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGTGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACGG  >  NC_000913/4426373‑4426559
                                                                                             |                                                                                             
CGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGC                                                                                               >  SRR4302537.3973897/1‑94 (MQ=60)
CGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGC                                                                                               <  SRR4302537.1308452/94‑1 (MQ=60)
 GCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCG                                                                                              >  SRR4302537.2208252/1‑94 (MQ=60)
 GCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCG                                                                                              >  SRR4302537.4410296/1‑94 (MQ=60)
  CCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGG                                                                                             <  SRR4302537.2209969/94‑1 (MQ=60)
   CTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGC                                                                                            <  SRR4302537.2834684/94‑1 (MQ=60)
   CTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGC                                                                                            >  SRR4302537.3966133/1‑94 (MQ=60)
   CTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGC                                                                                            >  SRR4302537.1402928/1‑94 (MQ=60)
   CTTTATTATATTCATACGGGATATTGCTATTGGTTCTTTTTCCCTGGGATTTGTCATGATTGCCGCGACAAAGTTTTACCCAAAGAAGTGCGGC                                                                                            >  SRR4302537.2559577/1‑94 (MQ=60)
    TTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCT                                                                                           <  SRR4302537.897344/94‑1 (MQ=60)
    TTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCT                                                                                           >  SRR4302537.1135517/1‑94 (MQ=60)
    TTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCT                                                                                           >  SRR4302537.4276299/1‑94 (MQ=60)
     TTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTG                                                                                          >  SRR4302537.953914/1‑94 (MQ=60)
     TTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTG                                                                                          >  SRR4302537.1429970/1‑94 (MQ=60)
       ATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGAT                                                                                        <  SRR4302537.2783729/94‑1 (MQ=60)
       ATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGAT                                                                                        <  SRR4302537.324852/94‑1 (MQ=60)
        TTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATA                                                                                       >  SRR4302537.334139/1‑94 (MQ=60)
         TATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAT                                                                                      <  SRR4302537.5863184/94‑1 (MQ=60)
         TATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAT                                                                                      >  SRR4302537.335997/1‑94 (MQ=60)
         TATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAT                                                                                      <  SRR4302537.2366815/94‑1 (MQ=60)
         TATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAT                                                                                      <  SRR4302537.4469607/94‑1 (MQ=60)
         TATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATAT                                                                                      <  SRR4302537.2082819/94‑1 (MQ=60)
          ATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATG                                                                                     >  SRR4302537.4447836/1‑94 (MQ=60)
          ATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATG                                                                                     >  SRR4302537.503435/1‑94 (MQ=60)
          ATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATG                                                                                     >  SRR4302537.3090621/1‑94 (MQ=60)
            ATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGCAGTGCGGCTGATATGCT                                                                                   >  SRR4302537.2024032/1‑94 (MQ=60)
            ATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCT                                                                                   <  SRR4302537.5959495/94‑1 (MQ=60)
              TCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGC                                                                                 <  SRR4302537.5579675/94‑1 (MQ=60)
               CATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCC                                                                                >  SRR4302537.4923471/1‑94 (MQ=60)
               CATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCC                                                                                >  SRR4302537.4712283/1‑94 (MQ=60)
               CATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCC                                                                                >  SRR4302537.3633011/1‑94 (MQ=60)
                ATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCC                                                                               <  SRR4302537.3028696/94‑1 (MQ=60)
                ATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCC                                                                               >  SRR4302537.5725343/1‑94 (MQ=60)
                ATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCC                                                                               >  SRR4302537.6224275/1‑94 (MQ=60)
                 TACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCG                                                                              >  SRR4302537.5582298/1‑94 (MQ=60)
                 TACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCG                                                                              <  SRR4302537.596349/94‑1 (MQ=60)
                   CGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCT                                                                            <  SRR4302537.1966424/94‑1 (MQ=60)
                     GGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCGCGCTAC                                                                          >  SRR4302537.1095497/1‑94 (MQ=60)
                       ATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTT                                                                        <  SRR4302537.2093497/94‑1 (MQ=60)
                        TATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTT                                                                       <  SRR4302537.1266165/94‑1 (MQ=60)
                        TATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTT                                                                       <  SRR4302537.330732/94‑1 (MQ=60)
                         ATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTA                                                                      >  SRR4302537.4410469/1‑94 (MQ=60)
                          TTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTAT                                                                     >  SRR4302537.4442668/1‑94 (MQ=60)
                          TTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTAT                                                                     <  SRR4302537.4124392/94‑1 (MQ=60)
                          TTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTAT                                                                     <  SRR4302537.2788630/94‑1 (MQ=60)
                            GCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAC                                                                   <  SRR4302537.1616641/94‑1 (MQ=60)
                            GCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAC                                                                   <  SRR4302537.893558/94‑1 (MQ=60)
                            GCTATCGTTTCTTTTTCCCTGGGATGTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATAC                                                                   <  SRR4302537.2360714/94‑1 (MQ=60)
                             CTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACC                                                                  <  SRR4302537.6352352/94‑1 (MQ=60)
                             CTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACC                                                                  >  SRR4302537.5648276/1‑94 (MQ=60)
                             CTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACC                                                                  >  SRR4302537.5321218/1‑94 (MQ=60)
                             CTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACC                                                                  >  SRR4302537.943402/1‑94 (MQ=60)
                             CTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACC                                                                  >  SRR4302537.979469/1‑94 (MQ=60)
                              TATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCC                                                                 <  SRR4302537.214204/94‑1 (MQ=60)
                              TATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCC                                                                 >  SRR4302537.2287381/1‑94 (MQ=60)
                              TATTGTTGCTTTTTCCCTGGGATGTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCC                                                                 <  SRR4302537.2349665/94‑1 (MQ=60)
                               ATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCT                                                                >  SRR4302537.216650/1‑94 (MQ=60)
                               ATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCT                                                                <  SRR4302537.3294290/94‑1 (MQ=60)
                               ATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCT                                                                >  SRR4302537.3594691/1‑94 (MQ=60)
                                TTTTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTA                                                               <  SRR4302537.5688245/94‑1 (MQ=60)
                                 TGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAA                                                              >  SRR4302537.2589588/1‑94 (MQ=60)
                                  TTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAG                                                             <  SRR4302537.1860371/94‑1 (MQ=60)
                                   TTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGA                                                            >  SRR4302537.3748300/1‑94 (MQ=60)
                                   TTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGA                                                            <  SRR4302537.6007454/94‑1 (MQ=60)
                                   TTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGA                                                            <  SRR4302537.3501777/94‑1 (MQ=60)
                                     TCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAA                                                          <  SRR4302537.411783/94‑1 (MQ=60)
                                      CTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAG                                                         >  SRR4302537.4298043/1‑94 (MQ=60)
                                       TTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTCAGAAAGG                                                        >  SRR4302537.6254594/1‑94 (MQ=60)
                                       TTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGG                                                        >  SRR4302537.6254593/1‑94 (MQ=60)
                                       TTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGG                                                        <  SRR4302537.6217967/94‑1 (MQ=60)
                                       TTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGG                                                        >  SRR4302537.2463696/1‑94 (MQ=60)
                                        TTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGA                                                       <  SRR4302537.61070/94‑1 (MQ=60)
                                         TTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAA                                                      <  SRR4302537.2573237/94‑1 (MQ=60)
                                            CCCTGGGATTTTTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATA                                                   <  SRR4302537.1223949/94‑1 (MQ=60)
                                            CCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATA                                                   >  SRR4302537.462608/1‑94 (MQ=60)
                                            CCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATA                                                   >  SRR4302537.1938987/1‑94 (MQ=60)
                                            CCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATA                                                   >  SRR4302537.6313158/1‑94 (MQ=60)
                                             CCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATAC                                                  >  SRR4302537.1266911/1‑94 (MQ=60)
                                             CCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATAC                                                  >  SRR4302537.5570591/1‑94 (MQ=60)
                                             CCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATAC                                                  >  SRR4302537.901709/1‑94 (MQ=60)
                                              CTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTGCTTTATACCCTAAGAAAGGAAATACG                                                 >  SRR4302537.3059440/1‑94 (MQ=60)
                                              CTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACG                                                 >  SRR4302537.2300723/1‑94 (MQ=60)
                                              CTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACG                                                 >  SRR4302537.5234853/1‑94 (MQ=60)
                                              CTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACG                                                 <  SRR4302537.5180219/94‑1 (MQ=60)
                                                GGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGAT                                               >  SRR4302537.793573/1‑94 (MQ=60)
                                                 GGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATG                                              <  SRR4302537.6138046/94‑1 (MQ=60)
                                                 GGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATG                                              <  SRR4302537.1049955/94‑1 (MQ=60)
                                                 GGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATG                                              >  SRR4302537.5160048/1‑94 (MQ=60)
                                                 GGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATG                                              >  SRR4302537.2424262/1‑94 (MQ=60)
                                                 GGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGCAAATACGATG                                              >  SRR4302537.4754168/1‑94 (MQ=60)
                                                   ATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGAC                                            >  SRR4302537.882346/1‑94 (MQ=60)
                                                   ATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGAC                                            <  SRR4302537.1035142/94‑1 (MQ=60)
                                                     TTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCA                                          >  SRR4302537.921588/1‑94 (MQ=60)
                                                     TTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCA                                          >  SRR4302537.5433208/1‑94 (MQ=60)
                                                       GTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACC                                        >  SRR4302537.3689568/1‑94 (MQ=60)
                                                        TCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCC                                       >  SRR4302537.3012254/1‑94 (MQ=60)
                                                        TCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCC                                       <  SRR4302537.3248377/94‑1 (MQ=60)
                                                         CATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCC                                      >  SRR4302537.5758165/1‑94 (MQ=60)
                                                         CATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCC                                      >  SRR4302537.3877064/1‑94 (MQ=60)
                                                          ATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCA                                     >  SRR4302537.1035840/1‑94 (MQ=60)
                                                          ATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCA                                     <  SRR4302537.299900/94‑1 (MQ=60)
                                                           TCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAA                                    >  SRR4302537.5876327/1‑94 (MQ=60)
                                                            CATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGAGCACCCCAAC                                   >  SRR4302537.3200992/1‑94 (MQ=60)
                                                            CATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAAC                                   <  SRR4302537.2140201/94‑1 (MQ=60)
                                                            CATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAAC                                   >  SRR4302537.5743547/1‑94 (MQ=60)
                                                            CATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAAC                                   >  SRR4302537.3475281/1‑94 (MQ=60)
                                                             ATTCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACT                                  <  SRR4302537.503022/94‑1 (MQ=60)
                                                               TCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTT                                >  SRR4302537.850665/1‑94 (MQ=60)
                                                               TCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTT                                >  SRR4302537.6069895/1‑94 (MQ=60)
                                                               TCCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTT                                >  SRR4302537.4641953/1‑94 (MQ=60)
                                                                CCCGCGACAAAGTTTTACCCAAAGAAGTTCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTT                               <  SRR4302537.6101708/94‑1 (MQ=60)
                                                                CCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTT                               >  SRR4302537.4752340/1‑94 (MQ=60)
                                                                CCCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTT                               >  SRR4302537.4493662/1‑94 (MQ=60)
                                                                 CCGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTG                              <  SRR4302537.5393973/94‑1 (MQ=60)
                                                                  CGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGA                             >  SRR4302537.3615840/1‑94 (MQ=60)
                                                                  CGCGACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGA                             >  SRR4302537.4244560/1‑94 (MQ=60)
                                                                    CGACAAAGTTTTATCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACA                           >  SRR4302537.5694687/1‑94 (MQ=60)
                                                                     GACAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACAC                          <  SRR4302537.3356201/94‑1 (MQ=60)
                                                                       CAAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCA                        >  SRR4302537.3189301/1‑94 (MQ=60)
                                                                        AAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCAT                       >  SRR4302537.3777689/1‑94 (MQ=60)
                                                                        AAAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCAT                       <  SRR4302537.426352/94‑1 (MQ=60)
                                                                         AAGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATC                      >  SRR4302537.1373751/1‑94 (MQ=60)
                                                                          AGTTTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCG                     <  SRR4302537.4394871/94‑1 (MQ=60)
                                                                             TTTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAG                  <  SRR4302537.4889018/94‑1 (MQ=60)
                                                                              TTACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGC                 >  SRR4302537.1357820/1‑94 (MQ=60)
                                                                               TACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCG                <  SRR4302537.4649573/94‑1 (MQ=60)
                                                                               TACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCG                <  SRR4302537.4042478/94‑1 (MQ=60)
                                                                                ACCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGC               >  SRR4302537.1093208/1‑94 (MQ=60)
                                                                                 CCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCA              >  SRR4302537.3475609/1‑94 (MQ=60)
                                                                                 CCCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCA              <  SRR4302537.573162/94‑1 (MQ=60)
                                                                                  CCAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAA             >  SRR4302537.2088302/1‑94 (MQ=60)
                                                                                   CAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAG            >  SRR4302537.4223593/1‑94 (MQ=60)
                                                                                   CAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAG            >  SRR4302537.5615504/1‑94 (MQ=60)
                                                                                   CAAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAG            >  SRR4302537.410109/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACGCCATCGAAGCGCAAGC           <  SRR4302537.1721774/94‑1 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           >  SRR4302537.2085568/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           >  SRR4302537.2156307/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           <  SRR4302537.499865/94‑1 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           >  SRR4302537.548197/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           >  SRR4302537.5165916/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           >  SRR4302537.2559220/1‑94 (MQ=60)
                                                                                    AAAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGC           <  SRR4302537.6436630/94‑1 (MQ=60)
                                                                                     AAGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCA          >  SRR4302537.5724913/1‑94 (MQ=60)
                                                                                      AGAAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAA         >  SRR4302537.5097465/1‑94 (MQ=60)
                                                                                        AAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGC       >  SRR4302537.2421678/1‑94 (MQ=60)
                                                                                        AAGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGC       <  SRR4302537.250241/94‑1 (MQ=60)
                                                                                         AGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCT      <  SRR4302537.846892/94‑1 (MQ=60)
                                                                                         AGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCT      <  SRR4302537.33420/94‑1 (MQ=60)
                                                                                         AGTGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCT      <  SRR4302537.5367743/94‑1 (MQ=60)
                                                                                           TGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTAC    <  SRR4302537.3380825/94‑1 (MQ=60)
                                                                                           TGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTAC    <  SRR4302537.3204732/94‑1 (MQ=60)
                                                                                           TGCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGAAAGCAAGCTAC    >  SRR4302537.2327308/1‑94 (MQ=60)
                                                                                            GCGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACG   <  SRR4302537.904718/94‑1 (MQ=60)
                                                                                             CGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACGG  <  SRR4302537.5900083/94‑1 (MQ=60)
                                                                                             CGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACGG  <  SRR4302537.1567554/94‑1 (MQ=60)
                                                                                             CGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACGG  <  SRR4302537.1820467/94‑1 (MQ=60)
                                                                                             CGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTCTGACACCATCGAAGCGCAAGCAAGCTACGG  >  SRR4302537.1600223/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGCGACAAAGTTTTACCCAAAGAAGTGTGGCTGATATGCTGCCCGCTACTTTATACCCTAAGAAAGGAAATACGATGACCACCCCAACTTTTGACACCATCGAAGCGCAAGCAAGCTACGG  >  NC_000913/4426373‑4426559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑