Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,543,743 |
T→C |
V360A (GTA→GCA) |
fimD → |
FimD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,543,743 | 0 | T | C | 100.0%
| 818.1
/ NA
| 241 | V360A (GTA→GCA) | fimD | FimD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/126); total (115/126) |
Only 100 of 247 total aligned reads displayed.
TTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGC > NC_000913/4543653‑4543832
|
ttACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCAc > 1:3209674/1‑93 (MQ=255)
cATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGTCAGCACGCAGATTTTTACCGCACCCTa > 2:26749/1‑93 (MQ=255)
tCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTAtt > 2:2624190/1‑93 (MQ=255)
tCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTAtt < 1:4727041/93‑1 (MQ=255)
cAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTc < 1:47823/93‑1 (MQ=255)
cAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTc < 2:5401912/93‑1 (MQ=255)
cAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTc < 1:2451197/93‑1 (MQ=255)
aCGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGt > 2:3255536/1‑93 (MQ=255)
cGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTc > 2:881883/1‑93 (MQ=255)
cGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTc < 2:665002/93‑1 (MQ=255)
cGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTc > 1:2727153/1‑93 (MQ=255)
atatCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAg > 1:3613791/1‑93 (MQ=255)
tatCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGt < 1:1209482/93‑1 (MQ=255)
atCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTc < 2:5886692/93‑1 (MQ=255)
cTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTccc < 2:703790/93‑1 (MQ=255)
cTATGCCGCAGGTAATAGGGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTccc < 1:2249106/93‑1 (MQ=255)
tGCCGCAGTTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCt < 2:2392438/93‑1 (MQ=255)
tGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCt < 2:5279188/93‑1 (MQ=255)
gCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCtt < 1:5236228/93‑1 (MQ=255)
ccGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCttt < 2:415196/93‑1 (MQ=255)
ccGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCttt > 1:3869033/1‑93 (MQ=255)
cGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCtttt > 1:2244067/1‑93 (MQ=255)
gCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTg < 2:1110379/93‑1 (MQ=255)
aGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCa > 1:5693511/1‑93 (MQ=255)
ggTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCaa > 2:3747809/1‑93 (MQ=255)
ggTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCaa > 1:2536117/1‑93 (MQ=255)
gTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAAc < 1:242673/93‑1 (MQ=255)
tAATAGTGGNGACTTGCAGGTAACGATCAAAGAGGCTGACGGCNGNACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACg > 1:6060798/1‑93 (MQ=255)
aaTAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGt > 2:5324299/1‑93 (MQ=255)
aaTAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGt < 2:1248847/93‑1 (MQ=255)
aaTAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGt > 2:1701968/1‑93 (MQ=255)
aTAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTg > 1:397891/1‑93 (MQ=255)
aGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGaa < 1:4719007/93‑1 (MQ=255)
gtggtgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAg < 1:1572127/93‑1 (MQ=255)
ggggtgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTGCCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAg < 2:3179357/91‑1 (MQ=255)
tgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCa < 1:1037466/93‑1 (MQ=255)
gACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCAt < 2:2986771/93‑1 (MQ=255)
ttGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACt < 2:6342132/93‑1 (MQ=255)
ggTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTa < 2:2082221/93‑1 (MQ=255)
gTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTAt > 2:2193590/1‑93 (MQ=255)
gTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTAt < 1:6359842/93‑1 (MQ=255)
aCGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTcc > 1:1117765/1‑93 (MQ=255)
cGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCa < 2:1644512/93‑1 (MQ=255)
gATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCAt > 2:5486825/1‑93 (MQ=255)
gATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCAt > 2:4325518/1‑93 (MQ=255)
aTCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGGAGGGCATACTCGTTATTCCAtt > 1:5558328/1‑93 (MQ=255)
tCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTa > 1:5263529/1‑93 (MQ=255)
cAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTAc < 2:4538404/93‑1 (MQ=255)
aaaGAGGCTGACGGCAGCACGCAGCTTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACg > 2:840547/1‑93 (MQ=255)
aaaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACg > 1:5637266/1‑93 (MQ=255)
aaaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACg < 2:301743/93‑1 (MQ=255)
aaaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACg < 1:6216346/93‑1 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg > 1:4045338/1‑93 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg < 1:3411945/93‑1 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg > 1:5110746/1‑93 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg < 2:6148949/93‑1 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg < 1:6157302/93‑1 (MQ=255)
aaGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACgg < 1:5410179/93‑1 (MQ=255)
gagGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCa > 1:1681506/1‑93 (MQ=255)
gagGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCa < 1:4953508/93‑1 (MQ=255)
gagGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCa < 2:1845566/93‑1 (MQ=255)
agGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAg > 2:5159642/1‑93 (MQ=255)
gCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGga < 1:4736919/93‑1 (MQ=255)
cTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGgag > 2:6105343/1‑93 (MQ=255)
tGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGgaga < 2:2822791/93‑1 (MQ=255)
tGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGgaga > 2:4788398/1‑93 (MQ=255)
tGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGgaga > 2:343366/1‑93 (MQ=255)
gACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGaa < 1:4572911/93‑1 (MQ=255)
cGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATa < 1:1802945/93‑1 (MQ=255)
ggCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAc < 1:894833/93‑1 (MQ=255)
ggCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAc < 1:3669134/93‑1 (MQ=255)
cagcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCg < 1:4217609/93‑1 (MQ=255)
agcgCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGt < 1:2644166/93‑1 (MQ=255)
agcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGt > 1:781492/1‑93 (MQ=255)
agcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGt > 1:4512378/1‑93 (MQ=255)
gcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTa < 1:967340/93‑1 (MQ=255)
gcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTa < 2:5693511/93‑1 (MQ=255)
gcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTa < 2:2474342/93‑1 (MQ=255)
gcaCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACACGCAGTGCATACTCGTTATTCCATTACGGCAGGCGAATACCgag > 1:2831419/1‑91 (MQ=255)
caCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAg < 1:745660/93‑1 (MQ=255)
aCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGCGAATACCGttgg > 2:2268414/1‑90 (MQ=255)
cGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTg > 2:4056483/1‑93 (MQ=255)
gCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAggag > 2:1964050/1‑90 (MQ=255)
gCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTgg > 2:5595488/1‑93 (MQ=255)
gCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTgg < 1:5448616/93‑1 (MQ=255)
gCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGCAGTgg > 2:1054126/1‑93 (MQ=255)
gaGATTTTTACCGCTCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGa < 1:2010416/92‑1 (MQ=255)
cggATTTTTAGCGCGCGCTATGCGTCAGGCCCGCGTTTGCAACGCGGAGGGCGCAGTCGTTATTCCATTACGGCAGGAGAATAACGTAGTGGa > 2:3084926/3‑93 (MQ=255)
cAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGa > 1:1794490/1‑93 (MQ=255)
cAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGa > 2:4913268/1‑93 (MQ=255)
aGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGaa > 2:6190298/1‑93 (MQ=255)
aGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGGAGTGGaa > 1:3539147/1‑93 (MQ=255)
gATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTCATGGaaa > 2:596532/1‑93 (MQ=255)
gATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGaaa < 2:5046123/93‑1 (MQ=255)
aTTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAAt > 2:2113192/1‑93 (MQ=255)
tttttACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATg > 1:3177442/1‑93 (MQ=255)
ttttACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATgc < 1:2130890/93‑1 (MQ=255)
tACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCgca < 1:2827441/93‑1 (MQ=255)
tACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCgca < 1:3814811/93‑1 (MQ=255)
aCCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCgcag > 1:4244944/1‑93 (MQ=255)
|
TTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGC > NC_000913/4543653‑4543832
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGA > NC_000913/4543650‑4543836
|
CTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGC > SRR4302537.5446667/1‑94 (MQ=60)
CTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGC > SRR4302537.6405450/1‑94 (MQ=60)
TTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCA > SRR4302537.3655337/1‑94 (MQ=60)
TTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCA > SRR4302537.2407804/1‑94 (MQ=60)
TTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCAC > SRR4302537.3232239/1‑94 (MQ=60)
TTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCAC < SRR4302537.1675108/94‑1 (MQ=60)
CATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTAT < SRR4302537.5387520/94‑1 (MQ=60)
CATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTAT > SRR4302537.3859862/1‑94 (MQ=60)
TCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTC < SRR4302537.383717/94‑1 (MQ=60)
TCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTC < SRR4302537.4759714/94‑1 (MQ=60)
TCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTC > SRR4302537.773850/1‑94 (MQ=60)
TCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTC > SRR4302537.4573516/1‑94 (MQ=60)
TCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTC < SRR4302537.1810138/94‑1 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG < SRR4302537.2468441/94‑1 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG > SRR4302537.6255143/1‑94 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG < SRR4302537.2152282/94‑1 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG < SRR4302537.48177/94‑1 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG > SRR4302537.4765795/1‑94 (MQ=60)
CAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCG > SRR4302537.467015/1‑94 (MQ=60)
ACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTC > SRR4302537.5027015/1‑94 (MQ=60)
ACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTC > SRR4302537.2746197/1‑94 (MQ=60)
GATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAG < SRR4302537.6435212/94‑1 (MQ=60)
GATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAG > SRR4302537.3639266/1‑94 (MQ=60)
GATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAG > SRR4302537.4464365/1‑94 (MQ=60)
TATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTC < SRR4302537.1217897/94‑1 (MQ=60)
ATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCC > SRR4302537.4812179/1‑94 (MQ=60)
TCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCC > SRR4302537.5463029/1‑94 (MQ=60)
TCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCC < SRR4302537.5675335/94‑1 (MQ=60)
CTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCG > SRR4302537.1625177/1‑94 (MQ=60)
CTATGCCGCAGGTAATAGGGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCG < SRR4302537.2264979/94‑1 (MQ=60)
ATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCT < SRR4302537.5286773/94‑1 (MQ=60)
ATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCT < SRR4302537.2774669/94‑1 (MQ=60)
GCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTT > SRR4302537.3896110/1‑94 (MQ=60)
GCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTT < SRR4302537.5272254/94‑1 (MQ=60)
GCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTT < SRR4302537.3440198/94‑1 (MQ=60)
CCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTT > SRR4302537.67034/1‑94 (MQ=60)
CCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTT > SRR4302537.2259895/1‑94 (MQ=60)
CGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTG > SRR4302537.1950264/1‑94 (MQ=60)
GCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGC > SRR4302537.5606072/1‑94 (MQ=60)
CAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCGCGCTTTTGCA > SRR4302537.2877129/1‑94 (MQ=60)
CAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCA > SRR4302537.5732450/1‑94 (MQ=60)
CAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCA > SRR4302537.2147100/1‑94 (MQ=60)
CAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCA < SRR4302537.6110711/94‑1 (MQ=60)
AGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAA > SRR4302537.2028631/1‑94 (MQ=60)
AGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAA > SRR4302537.3302191/1‑94 (MQ=60)
AGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAA > SRR4302537.2553913/1‑94 (MQ=60)
GGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAAC > SRR4302537.527699/1‑94 (MQ=60)
GGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAAC < SRR4302537.464057/94‑1 (MQ=60)
GGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAAC > SRR4302537.6248180/1‑94 (MQ=60)
GTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACG < SRR4302537.244392/94‑1 (MQ=60)
GTAATAGTGGNGACTTGCAGGTAACGATCAAAGAGGCTGACGGCNGNACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACG > SRR4302537.6102435/1‑94 (MQ=60)
AATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTG > SRR4302537.400648/1‑94 (MQ=60)
AGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAG > SRR4302537.5455671/1‑94 (MQ=60)
AGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAG < SRR4302537.4751636/94‑1 (MQ=60)
GTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGG < SRR4302537.5742930/94‑1 (MQ=60)
GTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGG < SRR4302537.1583098/94‑1 (MQ=60)
TGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGG < SRR4302537.2478318/94‑1 (MQ=60)
GGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGG < SRR4302537.3567573/94‑1 (MQ=60)
GGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGC < SRR4302537.5882350/94‑1 (MQ=60)
GTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCA > SRR4302537.426555/1‑94 (MQ=60)
TGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCAT < SRR4302537.1044608/94‑1 (MQ=60)
CTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACT < SRR4302537.3085002/94‑1 (MQ=60)
CTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACT > SRR4302537.4236924/1‑94 (MQ=60)
CTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACT > SRR4302537.1185963/1‑94 (MQ=60)
AGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTA > SRR4302537.5088067/1‑94 (MQ=60)
AGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTA < SRR4302537.2542844/94‑1 (MQ=60)
AGGTAACGATCAAAGAGGCGGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTA < SRR4302537.2709215/94‑1 (MQ=60)
GGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTAT < SRR4302537.5721971/94‑1 (MQ=60)
GTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATT < SRR4302537.6403234/94‑1 (MQ=60)
GTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATT < SRR4302537.3949718/94‑1 (MQ=60)
AACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCC > SRR4302537.1125500/1‑94 (MQ=60)
AACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCC < SRR4302537.2615516/94‑1 (MQ=60)
ACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCA < SRR4302537.4845583/94‑1 (MQ=60)
CGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCTCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCAT < SRR4302537.1231119/94‑1 (MQ=60)
CGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGGTATTCCAT > SRR4302537.4074808/1‑94 (MQ=60)
GATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGGAGGGCATACTCGTTATTCCATT > SRR4302537.5596308/1‑94 (MQ=60)
ATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTA > SRR4302537.5299746/1‑94 (MQ=60)
ATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTA < SRR4302537.1112141/94‑1 (MQ=60)
CAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACG > SRR4302537.5675845/1‑94 (MQ=60)
AAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGG < SRR4302537.182976/94‑1 (MQ=60)
AAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGG > SRR4302537.5145962/1‑94 (MQ=60)
AAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGG < SRR4302537.6259145/94‑1 (MQ=60)
AAAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGG > SRR4302537.4073625/1‑94 (MQ=60)
AAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGC < SRR4302537.6199677/94‑1 (MQ=60)
AAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGC < SRR4302537.3436108/94‑1 (MQ=60)
AAGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGC < SRR4302537.5447073/94‑1 (MQ=60)
AGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCA > SRR4302537.1693274/1‑94 (MQ=60)
AGAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCA > SRR4302537.1469541/1‑94 (MQ=60)
GAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAG < SRR4302537.4987666/94‑1 (MQ=60)
GAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAG < SRR4302537.4073557/94‑1 (MQ=60)
AAGGCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTAAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAG < SRR4302537.5214934/94‑1 (MQ=60)
GCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAG > SRR4302537.3590535/1‑94 (MQ=60)
GCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAG < SRR4302537.2261798/94‑1 (MQ=60)
GCTGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAG < SRR4302537.4769664/94‑1 (MQ=60)
TGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGGA > SRR4302537.1762860/1‑94 (MQ=60)
TGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAA > SRR4302537.1728251/1‑94 (MQ=60)
TGACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAA < SRR4302537.3689220/94‑1 (MQ=60)
GACGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAAT < SRR4302537.4604564/94‑1 (MQ=60)
CGGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAC < SRR4302537.1815527/94‑1 (MQ=60)
GGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACC < SRR4302537.901013/94‑1 (MQ=60)
GGCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACC < SRR4302537.3694950/94‑1 (MQ=60)
GCAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCG < SRR4302537.932059/94‑1 (MQ=60)
CAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGT > SRR4302537.786858/1‑94 (MQ=60)
CAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGT < SRR4302537.4247008/94‑1 (MQ=60)
CAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGT > SRR4302537.4330621/1‑94 (MQ=60)
CAGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGT > SRR4302537.4543582/1‑94 (MQ=60)
AGCGCGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTA < SRR4302537.2662661/94‑1 (MQ=60)
AGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTA > SRR4302537.2851021/1‑94 (MQ=60)
AGCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACACGCAGTGCATACTCGTTATTCCATTACGGCAGGCGAATACCGag > SRR4302537.2851203/1‑92 (MQ=60)
GCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAG < SRR4302537.974011/94‑1 (MQ=60)
GCACGCAGATTTTTACCGCACCCTATTCGTCAGTCCAGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAG < SRR4302537.6391879/94‑1 (MQ=60)
CACGCATATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGT < SRR4302537.3323033/94‑1 (MQ=60)
CACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGT < SRR4302537.750745/94‑1 (MQ=60)
ACGCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTG < SRR4302537.4791890/94‑1 (MQ=60)
GCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGA > SRR4302537.3754375/1‑94 (MQ=60)
GCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGA > SRR4302537.1807010/1‑94 (MQ=60)
GCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGA > SRR4302537.2456203/1‑94 (MQ=60)
GCAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGA < SRR4302537.5485781/94‑1 (MQ=60)
GAGATTTTTACCGCTCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAA < SRR4302537.2024428/94‑1 (MQ=60)
CAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAA < SRR4302537.2439174/94‑1 (MQ=60)
CAGATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGGAGTGGAA > SRR4302537.3564142/1‑94 (MQ=60)
GATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAAT < SRR4302537.850779/94‑1 (MQ=60)
GATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAAT < SRR4302537.26954/94‑1 (MQ=60)
ATTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATG > SRR4302537.3199775/1‑94 (MQ=60)
TTTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGC < SRR4302537.2356258/94‑1 (MQ=60)
TTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCG > SRR4302537.3944051/1‑94 (MQ=60)
TTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCG < SRR4302537.2145885/94‑1 (MQ=60)
TTTTACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCG < SRR4302537.323176/94‑1 (MQ=60)
TACCGCGCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAG < SRR4302537.5546482/94‑1 (MQ=60)
TACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAG < SRR4302537.3841562/94‑1 (MQ=60)
TACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAG > SRR4302537.4274447/1‑94 (MQ=60)
TACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAG < SRR4302537.2847201/94‑1 (MQ=60)
TACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAC > SRR4302537.943960/1‑94 (MQ=60)
ACCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGC > SRR4302537.4752297/1‑94 (MQ=60)
CCGCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCA > SRR4302537.4868614/1‑94 (MQ=60)
GCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG < SRR4302537.4563747/94‑1 (MQ=60)
GCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG < SRR4302537.3684285/94‑1 (MQ=60)
GCACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG < SRR4302537.5014743/94‑1 (MQ=60)
CACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGA > SRR4302537.4878632/1‑94 (MQ=60)
|
CTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGA > NC_000913/4543650‑4543836
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
